HistCite - The genome sequence of Drosophila melanogaster

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#	Date / Author / Journal	LCS	GCS	LCR	CR
201	437 Phelan P, Starich TA Innexins get into the gap BIOESSAYS. 2001 MAY; 23 (5): 388-396	9	110	1	69
202	510 Roman G, Davis RL Molecular biology and anatomy of Drosophila olfactory associative learning BIOESSAYS. 2001 JUL; 23 (7): 571-581	5	69	3	74
203	646 Vigoreaux JO Genetics of the Drosophila flight muscle myofibril: a window into the biology of complex systems BIOESSAYS. 2001 NOV; 23 (11): 1047-1063	1	24	4	85
204	879 Kureishy N, Sapountzi V, Prag S, Anilkumar N, Adams JC Fascins, and their roles in cell structure and function BIOESSAYS. 2002 APR; 24 (4): 350-361	2	114	1	91
205	953 Etter PD, Ramaswami M The ups and downs of daily life: profiling circadian gene expression in Drosophila BIOESSAYS. 2002 JUN; 24 (6): 494-498	1	16	2	27
206	1115 Towers PR, Sattelle DB A Drosophila melanogaster cell line (S2) facilitates post-genome functional analysis of receptors and ion channels BIOESSAYS. 2002 NOV; 24 (11): 1066-1073	4	12	7	45
207	1486 Cirelli C Searching for sleep mutants of Drosophila melanogaster BIOESSAYS. 2003 OCT; 25 (10): 940-949	4	15	7	70
208	1801 Suzuki M, Hayashizaki Y Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs BIOESSAYS. 2004 AUG; 26 (8): 833-843	0	27	7	115
209	1844 Odunuga OO, Longshaw VM, Blatch GL Hop: more than an Hsp70/Hsp90 adaptor protein BIOESSAYS. 2004 OCT; 26 (10): 1058-1068	0	44	2	81
210	1888 Anholt RRH Genetic modules and networks for behavior: lessons from Drosophila BIOESSAYS. 2004 DEC; 26 (12): 1299-1306	0	13	8	65
#	Date / Author / Journal	LCS	GCS	LCR	CR
211	1952 Dimitri P, Corradini N, Rossi F, Verni F The paradox of functional heterochromatin BIOESSAYS. 2005 JAN; 27 (1): 29-41	6	27	14	106
212	2081 Barbazuk WB, Bedell JA, Rabinowicz PD Reduced representation sequencing: a success in maize and a promise for other plant genomes BIOESSAYS. 2005 AUG; 27 (8): 839-848	2	13	11	77
213	2226 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al. Decoding the rice genome BIOESSAYS. 2006 APR; 28 (4): 421-432	1	14	13	101
214	2442 Predel R, Neupert S Social behavior and the evolution of neuropeptide genes: lessons from the honeybee genome BIOESSAYS. 2007 MAY; 29 (5): 416-421	0	5	6	19
215	2734 Martinez NJ, Walhout AJM The interplay between transcription factors and microRNAs in genome-scale regulatory networks BIOESSAYS. 2009 APR; 31 (4): 435-445	0	0	5	104
216	2745 Hoy MA The predatory mite Metaseiulus occidentalis: mitey small and mitey large genomes BIOESSAYS. 2009 MAY; 31 (5): 581-590	0	0	5	74
217	647 Graveley BR Alternative splicing: Through the proteome jungle BIOFUTUR. 2001 NOV; 2001 (216): 39-43	0	0	2	12
218	2035 Preat T Long-term memory and drosophilia BIOFUTUR. 2005 JUN; (256): 35-37	0	0	3	20
219	228 Seong KH, Ogashiwa T, Matsuo T, Fuyama Y, Aigaki T Application of the gene search system to screen for longevity genes in Drosophila BIOGERONTOLOGY. 2001; 2 (3): 209-217	5	32	1	33
220	229 Seong KH, Matsuo T, Fuyama Y, Aigaki T Neural-specific overexpression of Drosophila Plenty of SH3s (DPOSH) extends the longevity of adult flies BIOGERONTOLOGY. 2001; 2 (4): 271-281	4	12	2	51
#	Date / Author / Journal	LCS	GCS	LCR	CR
221	79 Abril JF, Guigo R gff2ps: visualizing genomic annotations BIOINFORMATICS. 2000 AUG; 16 (8): 743-744	6	31	1	3
222	284 Mizuno H, Tanaka Y, Nakai K, Sarai A ORI-GENE: gene classification based on the evolutionary tree BIOINFORMATICS. 2001 FEB; 17 (2): 167-173	0	1	1	17
223	801 Nielsen HB, Knudsen S Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays BIOINFORMATICS. 2002 FEB; 18 (2): 321-322	0	17	1	8
224	1338 Saito R, Suzuki H, Hayashizaki Y Construction of reliable protein-protein interaction networks with a new interaction generality measure BIOINFORMATICS. 2003 APR 12; 19 (6): 756-763	0	29	5	36
225	1508 Liu XL, Muller HG Modes and clustering for time-warped gene expression profile data BIOINFORMATICS. 2003 OCT 12; 19 (15): 1937-1944	0	12	2	19
226	1561 Landais I, Ogliastro M, Mita K, Nohata J, Lopez-Ferber M, et al. Annotation pattern of ESTs from Spodoptera frugiperda Sf9 cells and analysis of the ribosomal protein genes reveal insect-specific features and unexpectedly low codon usage bias BIOINFORMATICS. 2003 DEC 12; 19 (18): 2343-2350	2	14	1	28
227	1562 Abril JF, Guigo R, Wiehe T gff2aplot: Plotting sequence comparisons BIOINFORMATICS. 2003 DEC 12; 19 (18): 2477-2479	0	3	5	16
228	1623 Zhu QS, Deng YP, Vanka P, Brown SJ, Muthukrishnan S, et al. Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome BIOINFORMATICS. 2004 JAN 22; 20 (2): 161-169	0	14	2	38
229	1674 Xue W, Wang J, Shen ZR, Zhu HQ Enrichment of transcriptional regulatory sites in non-coding genomic region BIOINFORMATICS. 2004 MAR 1; 20 (4): 569-575	0	2	4	29
230	1733 Iossifov I, Krauthammer M, Friedman C, Hatzivassiloglou V, Bader JS, et al. Probabilistic inference of molecular networks from noisy data sources BIOINFORMATICS. 2004 MAY 22; 20 (8): 1205-1213	0	15	1	33
#	Date / Author / Journal	LCS	GCS	LCR	CR
231	1763 Andreini C, Bertini I, Rosato A A hint to search for metalloproteins in gene banks BIOINFORMATICS. 2004 JUN 12; 20 (9): 1373-1380	0	32	1	33
232	1790 Wendl MC, Yang SP Gap statistics for whole genome shotgun DNA sequencing projects BIOINFORMATICS. 2004 JUL 1; 20 (10): 1527-1534	1	5	12	44
233	1835 Chaisson M, Pevzner P, Tang HX Fragment assembly with short reads BIOINFORMATICS. 2004 SEP 1; 20 (13): 2067-2074	1	36	5	29
234	1882 Grad YH, Roth FP, Halfon MS, Church GM Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura BIOINFORMATICS. 2004 NOV 1; 20 (16): 2738-2750	2	35	7	49
235	1910 Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, et al. A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome BIOINFORMATICS. 2004 DEC 12; 20 (18): 3293-3301	1	17	1	17
236	2000 Zheng XH, Lu F, Wang ZY, Hoover J, Mural R Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs BIOINFORMATICS. 2005 MAR 15; 21 (6): 703-710	0	16	10	36
237	2018 Lefebvre C, Aude JC, Glemet E, Neri C Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates BIOINFORMATICS. 2005 APR 15; 21 (8): 1550-1558	1	6	5	62
238	2098 Myers EW The fragment assembly string graph BIOINFORMATICS. 2005 SEP; 21: 79-85	0	8	4	16
239	2111 Pan XK, Stein L, Brendel V SynBrowse: a synteny browser for comparative sequence analysis BIOINFORMATICS. 2005 SEP 1; 21 (17): 3461-3468	0	21	5	30
240	2277 Adryan B, Teichmann SA FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster BIOINFORMATICS. 2006 JUN 15; 22 (12): 1532-1533	2	18	3	12
#	Date / Author / Journal	LCS	GCS	LCR	CR
241	2418 Cockell SJ, Oliva B, Jackson RM Structure-based evaluation of in silico predictions of protein-protein interactions using comparative docking BIOINFORMATICS. 2007 MAR; 23 (5): 573-581	0	9	1	41
242	2500 Freyhult E, Moulton V, Clote P Boltzmann probability of RNA structural neighbors and riboswitch detection BIOINFORMATICS. 2007 AUG 15; 23 (16): 2054-2062	0	1	1	42
243	2612 Satija R, Pachter L, Hein J Combining statistical alignment and phylogenetic footprinting to detect regulatory elements BIOINFORMATICS. 2008 MAY 15; 24 (10): 1236-1242	0	7	3	30
244	2768 Du P, Feng G, Flatow J, Song J, Holko M, et al. From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations BIOINFORMATICS. 2009 JUN 15; 25 (12): I63-I68	0	0	2	17
245	2781 Ed L, Nomi H, Mark G, Raymond C, Suzanna L Apollo: a community resource for genome annotation editing BIOINFORMATICS. 2009 JUL 15; 25 (14): 1836-1837	0	0	2	10
246	175 Kusnirikova P, Cellarova E Sequence databases for molecular biologists BIOLOGIA. 2000 DEC; 55 (6): 617-626	0	0	1	43
247	730 Lo Leggio L, Ernst HA, Hilden I, Larsen S A structural model for the N-terminal N1 module of E-coli glycogen branching enzyme BIOLOGIA. 2002; 57: 109-118	0	1	1	48
248	2783 Xing FG, Tan XG, Zhang PJ, Liu Y, Ma JK Cloning and characterization of NM23-Bbt2 gene from amphioxus Branchiostoma belcheri tsingtauense BIOLOGIA. 2009 AUG; 64 (4): 803-810	0	0	3	57
249	1291 Missirlis F, Rahlfs S, Dimopoulos N, Bauer H, Becker K, et al. A putative glutathione peroxidase of Drosophila encodes a thioredoxin peroxidase that provides resistance against oxidative stress but fails to complement a lack of catalase activity BIOLOGICAL CHEMISTRY. 2003 MAR; 384 (3): 463-472	2	14	6	65
250	1346 Loxdale HD, Lushai G Rapid changes in clonal lines: the death of a 'sacred cow' BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2003 MAY; 79 (1): 3-16	0	42	2	144
#	Date / Author / Journal	LCS	GCS	LCR	CR
251	1802 Furlong RF, Holland PWH Polyploidy in vertebrate ancestry: Ohno and beyond BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2004 AUG; 82 (4): 425-430	1	26	6	29
252	2288 Ryan FP Genomic creativity and natural selection: a modern synthesis BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2006 AUG; 88 (4): 655-672	0	9	5	199
253	201 Moldin SO Neurobiology of anxiety and fear: Challenges for genomic science of the new millennium BIOLOGICAL PSYCHIATRY. 2000 DEC 15; 48 (12): 1144-1146	0	8	2	19
254	1539 Wisniewski TP, Tanzi CL, Gindhart JG The Drosophila kinesin-1 associated protein YETI binds both kinesin subunits BIOLOGY OF THE CELL. 2003 DEC; 95 (9): 595-602	0	3	2	52
255	2385 Mereau A, Le Sommer C, Lerivray H, Lesimple M, Hardy S Xenopus as a model to study alternative splicing in vivo BIOLOGY OF THE CELL. 2007 JAN; 99 (1): 55-65	0	1	2	73
256	2555 Bradu A, Ma L, Bloor J, Podoleanu A Combining confocal microscopy and Optical Coherence Tomography for imaging in developmental biology - art. no. 69910K BIOPHOTONICS: PHOTONIC SOLUTIONS FOR BETTER HEALTH CARE. 2008; 6991: K9910-K9910	0	0	2	16
257	285 Reijenga KA, Snoep JL, Diderich JA, van Verseveld HW, Westerhoff HV, et al. Control of glycolytic dynamics by hexose transport in Saccharomyces cerevisiae BIOPHYSICAL JOURNAL. 2001 FEB; 80 (2): 626-634	0	33	1	47
258	1953 Greenfield NJ, Kostyukova AS, Hitchcock-DeGregori SE Structure and tropomyosin binding properties of the N-terminal capping domain of tropomodulin 1 BIOPHYSICAL JOURNAL. 2005 JAN; 88 (1): 372-383	0	13	2	87
259	2654 Cusson M The molecular biology toolbox and its use in basic and applied insect science BIOSCIENCE. 2008 SEP; 58 (8): 691-700	0	1	8	73
260	535 Inoue H, Ozaki N, Nagasawa H Purification and structural determination of a phosphorylated peptide with anti-calcification and chitin-binding activities in the exoskeleton of the crayfish, Procambarus clarkii BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2001 AUG; 65 (8): 1840-1848	0	28	1	33
#	Date / Author / Journal	LCS	GCS	LCR	CR
261	1402 Kamiie K, Yamashita T, Taira H, Kidou SI, Ejir SI Interaction between elongation factors 1 beta and 1 gamma from Bombyx mori silk gland BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2003 JUL; 67 (7): 1522-1529	0	4	1	31
262	1980 Yamamoto K, Zhang PB, Banno Y, Fujii H, Miake F, et al. Superoxide dismutase from the silkworm, Bombyx mori: Sequence, distribution, and overexpression BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2005 MAR; 69 (3): 507-514	0	8	2	44
263	2469 Nishimoto M, Mori H, Moteki T, Takamura Y, Iwai G, et al. Molecular cloning of cDNAs and genes for three alpha-glucosidases from European honeybees, Apis mellifera L., and heterologous production of recombinant enzymes in Pichia pastoris BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2007 JUL; 71 (7): 1703-1716	0	1	1	37
264	577 Durick K, Negulescu P Cellular biosensors for drug discovery BIOSENSORS & BIOELECTRONICS. 2001 SEP; 16 (7-8): 587-592	0	23	1	18
265	511 Lu X, Li YD Simulation of the evolution of genomic complexity BIOSYSTEMS. 2001 JUL-AUG; 61 (2-3): 83-94	0	2	2	33
266	146 Freeman WM, Robertson DJ, Vrana KE Fundamentals of DNA hybridization arrays for gene expression analysis BIOTECHNIQUES. 2000 NOV; 29 (5): 1042-+	0	100	1	80
267	352 Silva WA, Costa MCR, Valente V, Sousa JD, Paco-Larson ML, et al. PCR template preparation for capillary DNA sequencing BIOTECHNIQUES. 2001 MAR; 30 (3): 537-+	0	3	1	12
268	353 Jung AC, Criqui MC, Rutschmann S, Hoffmann JA, Ferrandon D Microfluorometer assay to measure the expression of beta-galactosidase and green fluorescent protein reporter genes in single Drosophila flies BIOTECHNIQUES. 2001 MAR; 30 (3): 594-+	0	13	1	29
269	1803 Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, et al. Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource BIOTECHNIQUES. 2004 AUG; 37 (2): 282-284	0	2	3	10
270	2591 Ratushny V, Golemis EA Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system BIOTECHNIQUES. 2008 APR; 44 (5): 655-662	0	2	6	96
#	Date / Author / Journal	LCS	GCS	LCR	CR
271	2756 Aravind L, Anantharaman V, Venancio TM Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164	0	1	12	203
272	1108 Pimanda JE, Annis DS, Raftery M, Mosher DF, Chesterman CN, et al. The von Willebrand factor-reducing activity of thrombospondin-1 is located in the calcium-binding/C-tenninal sequence and requires a free thiol at position 974 BLOOD. 2002 OCT 15; 100 (8): 2832-2838	1	17	3	39
273	1677 Peng H, Sahni A, Fay P, Bellum S, Prudovsky I, et al. Identification of a binding site on human FGF-2 for fibrinogen BLOOD. 2004 MAR 15; 103 (6): 2114-2120	0	15	1	40
274	248 Huang CH, Liu PZ New insights into the Rh superfamily of genes and proteins in erythroid cells and nonerythroid tissues BLOOD CELLS MOLECULES AND DISEASES. 2001 JAN; 27 (1): 90-101	0	48	1	48
275	2679 Lee GW, Kim S Genome data mining for everyone BMB REPORTS. 2008 NOV 30; 41 (11): 757-764	0	0	3	40
276	731 Truong K, Ikura M Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach BMC BIOINFORMATICS. 2002; 3: Art. No. 1	0	10	1	40
277	1473 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. The COG database: an updated version includes eukaryotes BMC BIOINFORMATICS. 2003 SEP 11; 4: Art. No. 41	5	814	7	60
278	1476 Prag S, Adams JC Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals BMC BIOINFORMATICS. 2003 SEP 17; 4: Art. No. 42	1	49	10	103
279	1732 Conant GC, Wagner A A fast algorithm for determining the best combination of local alignments to a query sequence BMC BIOINFORMATICS. 2004 MAY 18; 5: Art. No. 62	1	2	2	28
280	1908 Lee BTK, Tan TW, Ranganathan S DEDB: a database of Drosophila melanogaster exons in splicing graph form BMC BIOINFORMATICS. 2004 DEC 7; 5: Art. No. 189	0	16	2	16
#	Date / Author / Journal	LCS	GCS	LCR	CR
281	1998 Blair JE, Shah P, Hedges SB Evolutionary sequence analysis of complete eukaryote genomes BMC BIOINFORMATICS. 2005 MAR 11; 6: Art. No. 53	1	26	9	75
282	2075 Rouchka EC, Khalyfa A, Cooper NGF MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays BMC BIOINFORMATICS. 2005 JUL 13; 6: Art. No. 175	0	5	7	37
283	2223 Thompson J, Gopal S Genetic algorithm learning as a robust approach to RNA editing site prediction BMC BIOINFORMATICS. 2006 MAR 16; 7: Art. No. 145	0	7	3	28
284	2224 Behrsin CD, Brandl CJ, Litchfield DW, Shilton BH, Wahl LM Development of an unbiased statistical method for the analysis of unigenic evolution BMC BIOINFORMATICS. 2006 MAR 17; 7: Art. No. 150	0	3	2	17
285	2280 Negre V, Hotelier T, Volkoff AN, Gimenez S, Cousserans F, et al. SPODOBASE : an EST database for the lepidopteran crop pest Spodoptera BMC BIOINFORMATICS. 2006 JUN 23; 7: Art. No. 322	3	16	8	39
286	2286 Pitre S, Dehne F, Chan A, Cheetham J, Duong A, et al. PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs BMC BIOINFORMATICS. 2006 JUL 27; 7: Art. No. 365	0	18	4	41
287	2339 Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, et al. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow BMC BIOINFORMATICS. 2006 NOV 23; 7: Art. No. 513	0	4	4	42
288	2440 Leclercq S, Rivals E, Jarne P Detecting microsatellites within genomes: significant variation among algorithms BMC BIOINFORMATICS. 2007 APR 18; 8: Art. No. 125	1	8	2	50
289	2556 Xu QW, Shi YX, Lu Q, Zhang GQ, Luo QM, et al. GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations BMC BIOINFORMATICS. 2008; 9: Art. No. S6	0	2	2	40
290	2586 Zhang WS, Zou S, Song JZ Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster BMC BIOINFORMATICS. 2008 FEB 28; 9: Art. No. 129	0	1	3	28
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291	2611 DeBarry JD, Liu R, Bennetzen JL Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm BMC BIOINFORMATICS. 2008 MAY 13; 9: Art. No. 235	0	1	5	44
292	2641 Lee TH, Kim YK, Nahm BH GBParsy: A GenBank flatfile parser library with high speed BMC BIOINFORMATICS. 2008 JUL 25; 9: Art. No. 321	0	0	3	9
293	2653 Nagy A, Hegyi H, Farkas K, Tordai H, Kozma E, et al. Identification and correction of abnormal, incomplete and mispredicted proteins in public databases BMC BIOINFORMATICS. 2008 AUG 27; 9: Art. No. 353	0	4	4	47
294	2696 D'Antonio M, Masseroli M Extraction, integration and analysis of alternative splicing and protein structure distributed information BMC BIOINFORMATICS. 2009; 10: Art. No. S15	0	0	1	16
295	2722 Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE, et al. The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation BMC BIOINFORMATICS. 2009 FEB 11; 10: Art. No. 59	1	4	8	48
296	2744 Wu JY, Xu X, Xiao J, Xu L, Yi HG, et al. FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families BMC BIOINFORMATICS. 2009 APR 25; 10: Art. No. 123	0	0	3	22
297	1863 Rawlings JS, Rennebeck G, Harrison MW, Xi RW, Harrison DA Two Drosophila suppressors of cytokine signaling (SOCS) differentially regulate JAK and EGFR pathway activities BMC CELL BIOLOGY. 2004 OCT 15; 5: Art. No. 38	1	19	4	67
298	2162 Golovnina K, Blinov A, Akhmametyeva EM, Omelyanchuk LV, Chang LS Evolution and origin of merlin, the product of the Neurofibromatosis type 2 (NF2) tumor-suppressor gene BMC EVOLUTIONARY BIOLOGY. 2005 DEC 2; 5: Art. No. 69	0	7	2	76
299	2429 Laayouni H, Garcia-Franco F, Chavez-Sandoval BE, Trotta V, Beltran S, et al. Thermal evolution of gene expression profiles in Drosophila subobscura BMC EVOLUTIONARY BIOLOGY. 2007 MAR 19; 7: Art. No. 42	0	8	8	82
300	2453 Iida K, Cox-Foster DL, Yang XL, Ko WY, Cavener DR Expansion and evolution of insect GMC oxidoreductases BMC EVOLUTIONARY BIOLOGY. 2007 MAY 11; 7: Art. No. 75	1	2	7	35

Date / Author / Journal

LCS

GCS

LCR

201

437 Phelan P, Starich TA

Innexins get into the gap

BIOESSAYS. 2001 MAY; 23 (5): 388-396

110

202

510 Roman G, Davis RL

Molecular biology and anatomy of Drosophila olfactory associative learning

BIOESSAYS. 2001 JUL; 23 (7): 571-581

203

646 Vigoreaux JO

Genetics of the Drosophila flight muscle myofibril: a window into the biology of complex systems

BIOESSAYS. 2001 NOV; 23 (11): 1047-1063

204

879 Kureishy N, Sapountzi V, Prag S, Anilkumar N, Adams JC

Fascins, and their roles in cell structure and function

BIOESSAYS. 2002 APR; 24 (4): 350-361

114

205

953 Etter PD, Ramaswami M

The ups and downs of daily life: profiling circadian gene expression in Drosophila

BIOESSAYS. 2002 JUN; 24 (6): 494-498

206

1115 Towers PR, Sattelle DB

A Drosophila melanogaster cell line (S2) facilitates post-genome functional analysis of receptors and ion channels

BIOESSAYS. 2002 NOV; 24 (11): 1066-1073

207

1486 Cirelli C

Searching for sleep mutants of Drosophila melanogaster

BIOESSAYS. 2003 OCT; 25 (10): 940-949

208

1801 Suzuki M, Hayashizaki Y

Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs

BIOESSAYS. 2004 AUG; 26 (8): 833-843

115

209

1844 Odunuga OO, Longshaw VM, Blatch GL

Hop: more than an Hsp70/Hsp90 adaptor protein

BIOESSAYS. 2004 OCT; 26 (10): 1058-1068

210

1888 Anholt RRH

Genetic modules and networks for behavior: lessons from Drosophila

BIOESSAYS. 2004 DEC; 26 (12): 1299-1306

Date / Author / Journal

LCS

GCS

LCR

211

1952 Dimitri P, Corradini N, Rossi F, Verni F

The paradox of functional heterochromatin

BIOESSAYS. 2005 JAN; 27 (1): 29-41

106

212

2081 Barbazuk WB, Bedell JA, Rabinowicz PD

Reduced representation sequencing: a success in maize and a promise for other plant genomes

BIOESSAYS. 2005 AUG; 27 (8): 839-848

213

2226 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al.

Decoding the rice genome

BIOESSAYS. 2006 APR; 28 (4): 421-432

101

214

2442 Predel R, Neupert S

Social behavior and the evolution of neuropeptide genes: lessons from the honeybee genome

BIOESSAYS. 2007 MAY; 29 (5): 416-421

215

2734 Martinez NJ, Walhout AJM

The interplay between transcription factors and microRNAs in genome-scale regulatory networks

BIOESSAYS. 2009 APR; 31 (4): 435-445

104

216

2745 Hoy MA

The predatory mite Metaseiulus occidentalis: mitey small and mitey large genomes

BIOESSAYS. 2009 MAY; 31 (5): 581-590

217

647 Graveley BR

Alternative splicing: Through the proteome jungle

BIOFUTUR. 2001 NOV; 2001 (216): 39-43

218

2035 Preat T

Long-term memory and drosophilia

BIOFUTUR. 2005 JUN; (256): 35-37

219

228 Seong KH, Ogashiwa T, Matsuo T, Fuyama Y, Aigaki T

Application of the gene search system to screen for longevity genes in Drosophila

BIOGERONTOLOGY. 2001; 2 (3): 209-217

220

229 Seong KH, Matsuo T, Fuyama Y, Aigaki T

Neural-specific overexpression of Drosophila Plenty of SH3s (DPOSH) extends the longevity of adult flies

BIOGERONTOLOGY. 2001; 2 (4): 271-281

Date / Author / Journal

221

gff2ps: visualizing genomic annotations

BIOINFORMATICS. 2000 AUG; 16 (8): 743-744

222

284 Mizuno H, Tanaka Y, Nakai K, Sarai A

ORI-GENE: gene classification based on the evolutionary tree

BIOINFORMATICS. 2001 FEB; 17 (2): 167-173

223

801 Nielsen HB, Knudsen S

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays

BIOINFORMATICS. 2002 FEB; 18 (2): 321-322

224

1338 Saito R, Suzuki H, Hayashizaki Y

Construction of reliable protein-protein interaction networks with a new interaction generality measure

BIOINFORMATICS. 2003 APR 12; 19 (6): 756-763

225

1508 Liu XL, Muller HG

Modes and clustering for time-warped gene expression profile data

BIOINFORMATICS. 2003 OCT 12; 19 (15): 1937-1944

226

1561 Landais I, Ogliastro M, Mita K, Nohata J, Lopez-Ferber M, et al.

Annotation pattern of ESTs from Spodoptera frugiperda Sf9 cells and analysis of the ribosomal protein genes reveal insect-specific features and unexpectedly low codon usage bias

BIOINFORMATICS. 2003 DEC 12; 19 (18): 2343-2350

227

1562 Abril JF, Guigo R, Wiehe T

gff2aplot: Plotting sequence comparisons

BIOINFORMATICS. 2003 DEC 12; 19 (18): 2477-2479

228

1623 Zhu QS, Deng YP, Vanka P, Brown SJ, Muthukrishnan S, et al.

Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome

BIOINFORMATICS. 2004 JAN 22; 20 (2): 161-169

229

1674 Xue W, Wang J, Shen ZR, Zhu HQ

Enrichment of transcriptional regulatory sites in non-coding genomic region

BIOINFORMATICS. 2004 MAR 1; 20 (4): 569-575

230

1733 Iossifov I, Krauthammer M, Friedman C, Hatzivassiloglou V, Bader JS, et al.

Probabilistic inference of molecular networks from noisy data sources

BIOINFORMATICS. 2004 MAY 22; 20 (8): 1205-1213

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231

1763 Andreini C, Bertini I, Rosato A

A hint to search for metalloproteins in gene banks

BIOINFORMATICS. 2004 JUN 12; 20 (9): 1373-1380

232

1790 Wendl MC, Yang SP

Gap statistics for whole genome shotgun DNA sequencing projects

BIOINFORMATICS. 2004 JUL 1; 20 (10): 1527-1534

233

1835 Chaisson M, Pevzner P, Tang HX

Fragment assembly with short reads

BIOINFORMATICS. 2004 SEP 1; 20 (13): 2067-2074

234

1882 Grad YH, Roth FP, Halfon MS, Church GM

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura

BIOINFORMATICS. 2004 NOV 1; 20 (16): 2738-2750

235

1910 Accardo MC, Giordano E, Riccardo S, Digilio FA, Iazzetti G, et al.

A computational search for box C/D snoRNA genes in the Drosophila melanogaster genome

BIOINFORMATICS. 2004 DEC 12; 20 (18): 3293-3301

236

2000 Zheng XH, Lu F, Wang ZY, Hoover J, Mural R

Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs

BIOINFORMATICS. 2005 MAR 15; 21 (6): 703-710

237

2018 Lefebvre C, Aude JC, Glemet E, Neri C

Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates

BIOINFORMATICS. 2005 APR 15; 21 (8): 1550-1558

238

2098 Myers EW

The fragment assembly string graph

BIOINFORMATICS. 2005 SEP; 21: 79-85

239

2111 Pan XK, Stein L, Brendel V

SynBrowse: a synteny browser for comparative sequence analysis

BIOINFORMATICS. 2005 SEP 1; 21 (17): 3461-3468

240

2277 Adryan B, Teichmann SA

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

BIOINFORMATICS. 2006 JUN 15; 22 (12): 1532-1533

Date / Author / Journal

LCS

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241

2418 Cockell SJ, Oliva B, Jackson RM

Structure-based evaluation of in silico predictions of protein-protein interactions using comparative docking

BIOINFORMATICS. 2007 MAR; 23 (5): 573-581

242

2500 Freyhult E, Moulton V, Clote P

Boltzmann probability of RNA structural neighbors and riboswitch detection

BIOINFORMATICS. 2007 AUG 15; 23 (16): 2054-2062

243

2612 Satija R, Pachter L, Hein J

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements

BIOINFORMATICS. 2008 MAY 15; 24 (10): 1236-1242

244

2768 Du P, Feng G, Flatow J, Song J, Holko M, et al.

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

BIOINFORMATICS. 2009 JUN 15; 25 (12): I63-I68

245

2781 Ed L, Nomi H, Mark G, Raymond C, Suzanna L

Apollo: a community resource for genome annotation editing

BIOINFORMATICS. 2009 JUL 15; 25 (14): 1836-1837

246

175 Kusnirikova P, Cellarova E

Sequence databases for molecular biologists

BIOLOGIA. 2000 DEC; 55 (6): 617-626

247

730 Lo Leggio L, Ernst HA, Hilden I, Larsen S

A structural model for the N-terminal N1 module of E-coli glycogen branching enzyme

BIOLOGIA. 2002; 57: 109-118

248

2783 Xing FG, Tan XG, Zhang PJ, Liu Y, Ma JK

Cloning and characterization of NM23-Bbt2 gene from amphioxus Branchiostoma belcheri tsingtauense

BIOLOGIA. 2009 AUG; 64 (4): 803-810

249

1291 Missirlis F, Rahlfs S, Dimopoulos N, Bauer H, Becker K, et al.

A putative glutathione peroxidase of Drosophila encodes a thioredoxin peroxidase that provides resistance against oxidative stress but fails to complement a lack of catalase activity

BIOLOGICAL CHEMISTRY. 2003 MAR; 384 (3): 463-472

250

1346 Loxdale HD, Lushai G

Rapid changes in clonal lines: the death of a 'sacred cow'

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2003 MAY; 79 (1): 3-16

144

Date / Author / Journal

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251

1802 Furlong RF, Holland PWH

Polyploidy in vertebrate ancestry: Ohno and beyond

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2004 AUG; 82 (4): 425-430

252

2288 Ryan FP

Genomic creativity and natural selection: a modern synthesis

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY. 2006 AUG; 88 (4): 655-672

199

253

201 Moldin SO

Neurobiology of anxiety and fear: Challenges for genomic science of the new millennium

BIOLOGICAL PSYCHIATRY. 2000 DEC 15; 48 (12): 1144-1146

254

1539 Wisniewski TP, Tanzi CL, Gindhart JG

The Drosophila kinesin-1 associated protein YETI binds both kinesin subunits

BIOLOGY OF THE CELL. 2003 DEC; 95 (9): 595-602

255

2385 Mereau A, Le Sommer C, Lerivray H, Lesimple M, Hardy S

Xenopus as a model to study alternative splicing in vivo

BIOLOGY OF THE CELL. 2007 JAN; 99 (1): 55-65

256

2555 Bradu A, Ma L, Bloor J, Podoleanu A

Combining confocal microscopy and Optical Coherence Tomography for imaging in developmental biology - art. no. 69910K

BIOPHOTONICS: PHOTONIC SOLUTIONS FOR BETTER HEALTH CARE. 2008; 6991: K9910-K9910

257

285 Reijenga KA, Snoep JL, Diderich JA, van Verseveld HW, Westerhoff HV, et al.

Control of glycolytic dynamics by hexose transport in Saccharomyces cerevisiae

BIOPHYSICAL JOURNAL. 2001 FEB; 80 (2): 626-634

258

1953 Greenfield NJ, Kostyukova AS, Hitchcock-DeGregori SE

Structure and tropomyosin binding properties of the N-terminal capping domain of tropomodulin 1

BIOPHYSICAL JOURNAL. 2005 JAN; 88 (1): 372-383

259

2654 Cusson M

The molecular biology toolbox and its use in basic and applied insect science

BIOSCIENCE. 2008 SEP; 58 (8): 691-700

260

535 Inoue H, Ozaki N, Nagasawa H

Purification and structural determination of a phosphorylated peptide with anti-calcification and chitin-binding activities in the exoskeleton of the crayfish, Procambarus clarkii

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2001 AUG; 65 (8): 1840-1848

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LCS

GCS

LCR

261

1402 Kamiie K, Yamashita T, Taira H, Kidou SI, Ejir SI

Interaction between elongation factors 1 beta and 1 gamma from Bombyx mori silk gland

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2003 JUL; 67 (7): 1522-1529

262

1980 Yamamoto K, Zhang PB, Banno Y, Fujii H, Miake F, et al.

Superoxide dismutase from the silkworm, Bombyx mori: Sequence, distribution, and overexpression

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2005 MAR; 69 (3): 507-514

263

2469 Nishimoto M, Mori H, Moteki T, Takamura Y, Iwai G, et al.

Molecular cloning of cDNAs and genes for three alpha-glucosidases from European honeybees, Apis mellifera L., and heterologous production of recombinant enzymes in Pichia pastoris

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY. 2007 JUL; 71 (7): 1703-1716

264

577 Durick K, Negulescu P

Cellular biosensors for drug discovery

BIOSENSORS & BIOELECTRONICS. 2001 SEP; 16 (7-8): 587-592

265

511 Lu X, Li YD

Simulation of the evolution of genomic complexity

BIOSYSTEMS. 2001 JUL-AUG; 61 (2-3): 83-94

266

146 Freeman WM, Robertson DJ, Vrana KE

Fundamentals of DNA hybridization arrays for gene expression analysis

BIOTECHNIQUES. 2000 NOV; 29 (5): 1042-+

100

267

352 Silva WA, Costa MCR, Valente V, Sousa JD, Paco-Larson ML, et al.

PCR template preparation for capillary DNA sequencing

BIOTECHNIQUES. 2001 MAR; 30 (3): 537-+

268

353 Jung AC, Criqui MC, Rutschmann S, Hoffmann JA, Ferrandon D

Microfluorometer assay to measure the expression of beta-galactosidase and green fluorescent protein reporter genes in single Drosophila flies

BIOTECHNIQUES. 2001 MAR; 30 (3): 594-+

269

1803 Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, et al.

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

BIOTECHNIQUES. 2004 AUG; 37 (2): 282-284

270

2591 Ratushny V, Golemis EA

Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system

BIOTECHNIQUES. 2008 APR; 44 (5): 655-662

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271

2756 Aravind L, Anantharaman V, Venancio TM

Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution

BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164

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272

1108 Pimanda JE, Annis DS, Raftery M, Mosher DF, Chesterman CN, et al.

The von Willebrand factor-reducing activity of thrombospondin-1 is located in the calcium-binding/C-tenninal sequence and requires a free thiol at position 974

BLOOD. 2002 OCT 15; 100 (8): 2832-2838

273

1677 Peng H, Sahni A, Fay P, Bellum S, Prudovsky I, et al.

Identification of a binding site on human FGF-2 for fibrinogen

BLOOD. 2004 MAR 15; 103 (6): 2114-2120

274

248 Huang CH, Liu PZ

New insights into the Rh superfamily of genes and proteins in erythroid cells and nonerythroid tissues

BLOOD CELLS MOLECULES AND DISEASES. 2001 JAN; 27 (1): 90-101

275

2679 Lee GW, Kim S

Genome data mining for everyone

BMB REPORTS. 2008 NOV 30; 41 (11): 757-764

276

731 Truong K, Ikura M

Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach

BMC BIOINFORMATICS. 2002; 3: Art. No. 1

277

1473 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al.

The COG database: an updated version includes eukaryotes

BMC BIOINFORMATICS. 2003 SEP 11; 4: Art. No. 41

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278

1476 Prag S, Adams JC

Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals

BMC BIOINFORMATICS. 2003 SEP 17; 4: Art. No. 42

103

279

1732 Conant GC, Wagner A

A fast algorithm for determining the best combination of local alignments to a query sequence

BMC BIOINFORMATICS. 2004 MAY 18; 5: Art. No. 62

280

1908 Lee BTK, Tan TW, Ranganathan S

DEDB: a database of Drosophila melanogaster exons in splicing graph form

BMC BIOINFORMATICS. 2004 DEC 7; 5: Art. No. 189

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281

1998 Blair JE, Shah P, Hedges SB

Evolutionary sequence analysis of complete eukaryote genomes

BMC BIOINFORMATICS. 2005 MAR 11; 6: Art. No. 53

282

2075 Rouchka EC, Khalyfa A, Cooper NGF

MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays

BMC BIOINFORMATICS. 2005 JUL 13; 6: Art. No. 175

283

2223 Thompson J, Gopal S

Genetic algorithm learning as a robust approach to RNA editing site prediction

BMC BIOINFORMATICS. 2006 MAR 16; 7: Art. No. 145

284

2224 Behrsin CD, Brandl CJ, Litchfield DW, Shilton BH, Wahl LM

Development of an unbiased statistical method for the analysis of unigenic evolution

BMC BIOINFORMATICS. 2006 MAR 17; 7: Art. No. 150

285

2280 Negre V, Hotelier T, Volkoff AN, Gimenez S, Cousserans F, et al.

SPODOBASE : an EST database for the lepidopteran crop pest Spodoptera

BMC BIOINFORMATICS. 2006 JUN 23; 7: Art. No. 322

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2286 Pitre S, Dehne F, Chan A, Cheetham J, Duong A, et al.

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs

BMC BIOINFORMATICS. 2006 JUL 27; 7: Art. No. 365

287

2339 Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, et al.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow

BMC BIOINFORMATICS. 2006 NOV 23; 7: Art. No. 513

288

2440 Leclercq S, Rivals E, Jarne P

Detecting microsatellites within genomes: significant variation among algorithms

BMC BIOINFORMATICS. 2007 APR 18; 8: Art. No. 125

289

2556 Xu QW, Shi YX, Lu Q, Zhang GQ, Luo QM, et al.

GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations

BMC BIOINFORMATICS. 2008; 9: Art. No. S6

290

2586 Zhang WS, Zou S, Song JZ

Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster

BMC BIOINFORMATICS. 2008 FEB 28; 9: Art. No. 129

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2611 DeBarry JD, Liu R, Bennetzen JL

Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

BMC BIOINFORMATICS. 2008 MAY 13; 9: Art. No. 235

292

2641 Lee TH, Kim YK, Nahm BH

GBParsy: A GenBank flatfile parser library with high speed

BMC BIOINFORMATICS. 2008 JUL 25; 9: Art. No. 321

293

2653 Nagy A, Hegyi H, Farkas K, Tordai H, Kozma E, et al.

Identification and correction of abnormal, incomplete and mispredicted proteins in public databases

BMC BIOINFORMATICS. 2008 AUG 27; 9: Art. No. 353

294

2696 D'Antonio M, Masseroli M

Extraction, integration and analysis of alternative splicing and protein structure distributed information

BMC BIOINFORMATICS. 2009; 10: Art. No. S15

295

2722 Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE, et al.

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

BMC BIOINFORMATICS. 2009 FEB 11; 10: Art. No. 59

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2744 Wu JY, Xu X, Xiao J, Xu L, Yi HG, et al.

FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families

BMC BIOINFORMATICS. 2009 APR 25; 10: Art. No. 123

297

1863 Rawlings JS, Rennebeck G, Harrison MW, Xi RW, Harrison DA

Two Drosophila suppressors of cytokine signaling (SOCS) differentially regulate JAK and EGFR pathway activities

BMC CELL BIOLOGY. 2004 OCT 15; 5: Art. No. 38

298

2162 Golovnina K, Blinov A, Akhmametyeva EM, Omelyanchuk LV, Chang LS

Evolution and origin of merlin, the product of the Neurofibromatosis type 2 (NF2) tumor-suppressor gene

BMC EVOLUTIONARY BIOLOGY. 2005 DEC 2; 5: Art. No. 69

299

2429 Laayouni H, Garcia-Franco F, Chavez-Sandoval BE, Trotta V, Beltran S, et al.

Thermal evolution of gene expression profiles in Drosophila subobscura

BMC EVOLUTIONARY BIOLOGY. 2007 MAR 19; 7: Art. No. 42

300

2453 Iida K, Cox-Foster DL, Yang XL, Ko WY, Cavener DR

Expansion and evolution of insect GMC oxidoreductases

BMC EVOLUTIONARY BIOLOGY. 2007 MAY 11; 7: Art. No. 75

The genome sequence of Drosophila melanogaster Papers citing 'The Genome Sequence of Drosophilia Melanogaster,' by MD Adams at al., Science 287 March 24, 2000	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 10314, GCS 125233, CR 169720 Collection span: 1999 - 2009
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