HistCite - The genome sequence of Drosophila melanogaster

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#	Date / Author / Journal	LCS	GCS	LCR	CR
1	2569 Hauser F, Cazzamali G, Williamson M, Park Y, Li B, et al. A genome-wide inventory of neurohormone GPCRs in the red flour beetle Tribolium castaneum FRONTIERS IN NEUROENDOCRINOLOGY. 2008 JAN; 29 (1): 142-165	4	11	38	171
2	1938 Claeys I, Poels J, Simonet G, Franssens V, Van Loy T, et al. Insect neuropeptide and peptide hormone receptors: Current knowledge and future directions INSECT HORMONES, VOL 73. 2005; 73: 217-+	3	10	36	319
3	2301 Hauser F, Cazzamali G, Williamson M, Blenau W, Grimmelikhuijzen CJP A review of neurohormone GPCRs present in the fruitfly Drosophila melanogaster and the honey bee Apis mellifera PROGRESS IN NEUROBIOLOGY. 2006 SEP; 80 (1): 1-19	8	36	36	126
4	1192 Celniker SE, Rubin GM The Drosophila melanogaster genome ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2003; 4: 89-117	10	45	35	172
5	2147 Ashburner M, Bergman CM Drosophila melanogaster: A case study of a model genomic sequence and its consequences GENOME RESEARCH. 2005 DEC; 15 (12): 1661-1667	3	13	28	103
6	1216 Meeusen T, Mertens I, De Loof A, Schoofs L G protein-coupled receptors in invertebrates: A state of the art INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 230. 2003; 230: 189-+	3	20	27	259
7	1447 Carroll PM, Dougherty B, Ross-Macdonald P, Browman K, FitzGerald K Model systems in drug discovery: chemical genetics meets genomics PHARMACOLOGY & THERAPEUTICS. 2003 AUG; 99 (2): 183-220	1	22	25	340
8	2132 Ewer J Behavioral actions of neuropeptides in invertebrates: Insights from Drosophila HORMONES AND BEHAVIOR. 2005 NOV; 48 (4): 418-429	2	13	25	86
9	2306 Nassel DR, Homberg U Neuropeptides in interneurons of the insect brain CELL AND TISSUE RESEARCH. 2006 OCT; 326 (1): 1-24	0	32	25	161
10	2695 Singh ND, Larracuente AM, Sackton TB, Clark AG Comparative Genomics on the Drosophila Phylogenetic Tree ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS. 2009; 40: 459-480	0	0	22	118
#	Date / Author / Journal	LCS	GCS	LCR	CR
11	1223 Matthies HJG, Broadie K Techniques to dissect cellular and subcellular function in the Drosophila nervous system NEURONS: METHODS AND APPLICATIONS FOR THE CELL BIOLOGIST. 2003; 71: 195-265	0	4	21	574
12	1995 Matthews KA, Kaufman TC, Gelbart WM Research resources for Drosophila: The expanding universe NATURE REVIEWS GENETICS. 2005 MAR; 6 (3): 179-193	9	29	21	103
13	1070 Nassel DR Neuropeptides in the nervous system of Drosophila and other insects: multiple roles as neuromodulators and neurohormones PROGRESS IN NEUROBIOLOGY. 2002 SEP; 68 (1): 1-84	17	151	20	697
14	2108 Gregory TR Synergy between sequence and size in large-scale genomics NATURE REVIEWS GENETICS. 2005 SEP; 6 (9): 699-708	2	41	20	111
15	1189 Heckel DG Genomics in pure and applied entomology ANNUAL REVIEW OF ENTOMOLOGY. 2003; 48: 235-260	4	17	19	135
16	1705 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution NATURE. 2004 APR 1; 428 (6982): 493-521	43	752	19	226
17	1994 Venken KJT, Bellen HJ Emerging technologies for gene manipulation in Drosophila melanogaster NATURE REVIEWS GENETICS. 2005 MAR; 6 (3): 167-178	10	38	19	101
18	2248 Beller M, Oliver B One hundred years of high-throughput Drosophila research CHROMOSOME RESEARCH. 2006 MAY; 14 (4): 349-362	2	4	19	89
19	2541 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. Evolution of genes and genomes on the Drosophila phylogeny NATURE. 2007 NOV 8; 450 (7167): 203-218	45	299	19	151
20	1568 Borevitz JO, Ecker JR Plant genomics: The third wave ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 443-477	0	28	18	173
#	Date / Author / Journal	LCS	GCS	LCR	CR
21	2178 Bergman CM, Quesneville H, Anxolabehere D, Ashburner M Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome GENOME BIOLOGY. 2006; 7 (11): Art. No. R112	4	28	18	93
22	2487 Tang H Genome assembly, rearrangement, and repeats CHEMICAL REVIEWS. 2007 AUG; 107 (8): 3391-3406	0	1	18	154
23	2322 Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, et al. Insights into social insects from the genome of the honeybee Apis mellifera NATURE. 2006 OCT 26; 443 (7114): 931-949	51	286	17	180
24	2542 Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures NATURE. 2007 NOV 8; 450 (7167): 219-232	16	127	17	125
25	2574 Reumer A, Van Loy T, Clynen E, Schoofs L How functional genomics and genetics complements insect endocrinology GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2008 JAN 1; 155 (1): 22-30	0	2	17	90
26	2784 Dimitri P, Caizzi R, Giordano E, Accardo MC, Lattanzi G, et al. Constitutive heterochromatin: a surprising variety of expressed sequences CHROMOSOMA. 2009 AUG; 118 (4): 419-435	0	1	17	123
27	177 Celniker SE The Drosophila genome CURRENT OPINION IN GENETICS & DEVELOPMENT. 2000 DEC; 10 (6): 612-616	3	5	16	45
28	1632 Inlow JK, Restifo LL Molecular and comparative genetics of mental retardation GENETICS. 2004 FEB; 166 (2): 835-881	4	80	16	214
29	1836 Verleyen P, Clynen E, Huybrechts J, Van Lommel A, Bosch LV, et al. Fraenkel's pupariation factor identified at last DEVELOPMENTAL BIOLOGY. 2004 SEP 1; 273 (1): 38-47	5	14	16	56
30	2462 Ranz JM, Maurin D, Chan YS, von Grotthuss M, Hillier LW, et al. Principles of genome evolution in the Drosophila melanogaster species group PLOS BIOLOGY. 2007 JUN; 5 (6): Art. No. e152	0	29	16	127
#	Date / Author / Journal	LCS	GCS	LCR	CR
31	1741 Bellen HJ, Levis RW, Liao GC, He YC, Carlson JW, et al. The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes GENETICS. 2004 JUN; 167 (2): 761-781	23	247	15	94
32	2167 Mackay TEC, Anholt RRH Of flies and man: Drosophila as a model for human complex traits ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2006; 7: 339-367	0	13	15	199
33	2508 Diaz-Castillo C, Golic KG Evolution of gene sequence in response to chromosomal location GENETICS. 2007 SEP; 177 (1): 359-374	0	4	15	127
34	2522 Venken KJT, Bellen HJ Transgenesis upgrades for Drosophila melanogaster DEVELOPMENT. 2007 OCT 15; 134 (20): 3571-3584	1	12	15	151
35	2646 Jagge CL, Pietrantonio PV Diuretic hormone 44 receptor in Malpighian tubules of the mosquito Aedes aegypti: evidence for transcriptional regulation paralleling urination INSECT MOLECULAR BIOLOGY. 2008 AUG; 17 (4): 413-426	0	1	15	99
36	2686 Roller L, Yamanaka N, Watanabe K, Daubnerova I, Zitnan D, et al. The unique evolution of neuropeptide genes in the silkworm Bombyx mori INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2008 DEC; 38 (12): 1147-1157	0	5	15	74
37	1310 Barr MM Super models PHYSIOLOGICAL GENOMICS. 2003 MAR 18; 13 (1): 15-24	1	34	14	107
38	1707 Verleyen P, Huybrechts J, Sas F, Clynen E, Baggerman G, et al. Neuropeptidomics of the grey flesh fly, Neobellieria bullata BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2004 APR 9; 316 (3): 763-770	5	23	14	47
39	1754 Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number PROTEOMICS. 2004 JUN; 4 (6): 1712-1726	0	41	14	78
40	1923 Biemont C, Vieira C What transposable elements tell us about genome organization and evolution: the case of Drosophila CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 25-34	1	20	14	176
#	Date / Author / Journal	LCS	GCS	LCR	CR
41	1952 Dimitri P, Corradini N, Rossi F, Verni F The paradox of functional heterochromatin BIOESSAYS. 2005 JAN; 27 (1): 29-41	6	27	14	106
42	2086 Fitzpatrick KA, Sinclair DA, Schulze SR, Syrzycka M, Honda BM A genetic and molecular profile of third chromosome centric heterochromatin in Drosophila melanogaster GENOME. 2005 AUG; 48 (4): 571-584	4	7	14	104
43	2141 Salzano FM Evolutionary change - patterns and processes ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. 2005 DEC; 77 (4): 627-650	0	1	14	145
44	2156 Coghlan A, Eichler EE, Oliver SG, Paterson AH, Stein L Chromosome evolution in eukaryotes: a multi-kingdom perspective TRENDS IN GENETICS. 2005 DEC; 21 (12): 673-682	2	41	14	133
45	2227 Singh R, Robida MD, Karimpour S Building biological complexity with limited genes CURRENT GENOMICS. 2006 APR; 7 (2): 97-114	1	3	14	195
46	2383 Tettweiler G, Lasko P Investigating translation initiation using Drosophila molecular genetics TRANSLATION INITIATION: EXTRACT SYSTEMS AND MOLECULAR GENETICS. 2007; 429: 227-242	0	0	14	57
47	2483 Andreyeva EN, Kolesnikova TD, Demakova OV, Mendez-Lago M, Pokholkova GV, et al. High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUL 31; 104 (31): 12819-12824	1	6	14	61
48	2741 Chung H, Sztal T, Pasricha S, Sridhar M, Batterham P, et al. Characterization of Drosophila melanogaster cytochrome P450 genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009 APR 7; 106 (14): 5731-5736	0	3	14	84
49	2765 Bao RY, Friedrich M Molecular Evolution of the Drosophila Retinome: Exceptional Gene Gain in the Higher Diptera MOLECULAR BIOLOGY AND EVOLUTION. 2009 JUN; 26 (6): 1273-1287	0	0	14	117
50	866 Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M A question of size: the eukaryotic proteome and the problems in defining it NUCLEIC ACIDS RESEARCH. 2002 MAR 1; 30 (5): 1083-1090	8	84	13	80
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51	1191 Ashurst JL, Collins JE Gene annotation: Prediction and testing ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2003; 4: 69-88	4	34	13	101
52	1588 Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, et al. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura GENOME BIOLOGY. 2004; 5 (9): Art. No. R61	5	90	13	81
53	1879 Anholt RRH, Mackay TFC Quantitative genetic analyses of complex behaviours in Drosophila NATURE REVIEWS GENETICS. 2004 NOV; 5 (11): 838-849	0	42	13	84
54	2101 Mueller JL, Ram KR, McGraw LA, Qazi MCB, Siggia ED, et al. Cross-species comparison of Drosophila male accessory gland protein genes GENETICS. 2005 SEP; 171 (1): 131-143	5	54	13	95
55	2194 Birse RT, Johnson EC, Taghert PH, Nassel DR Widely distributed Drosophila G-protein-coupled receptor (CG7887) is activated by endogenous tachykinin-related peptides JOURNAL OF NEUROBIOLOGY. 2006 JAN; 66 (1): 33-46	4	12	13	38
56	2226 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al. Decoding the rice genome BIOESSAYS. 2006 APR; 28 (4): 421-432	1	14	13	101
57	2391 Corradini N, Rossi F, Giordano E, Caizzi R, Verni F, et al. Drosophila melanogaster as a model for studying protein-encoding genes that are resident in constitutive heterochromatin HEREDITY. 2007 JAN; 98 (1): 3-12	0	2	13	81
58	2527 Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ram KR, et al. Evolution in the fast lane: Rapidly evolving sex-related genes in drosophila GENETICS. 2007 NOV; 177 (3): 1321-1335	2	31	13	100
59	1075 Halfon MS, Michelson AM Exploring genetic regulatory networks in metazoan development: methods and models PHYSIOLOGICAL GENOMICS. 2002 SEP 3; 10 (3): 131-143	0	15	12	113
60	1175 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. Initial sequencing and comparative analysis of the mouse genome NATURE. 2002 DEC 5; 420 (6915): 520-562	166	2474	12	331
#	Date / Author / Journal	LCS	GCS	LCR	CR
61	1567 Pop M Shotgun sequence assembly ADVANCES IN COMPUTERS, VOL. 60. 2004; 60: 193-248	0	2	12	135
62	1584 Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes GENOME BIOLOGY. 2004; 5 (2): Art. No. R7	6	117	12	133
63	1601 Hsiang T, Baillie DL Recent progress, developments, and issues in comparative fungal genomics CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE. 2004 JAN-MAR; 26 (1): 19-30	1	4	12	113
64	1753 Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones PLOS BIOLOGY. 2004 JUN; 2 (6): Art. No. e162	0	168	12	116
65	1790 Wendl MC, Yang SP Gap statistics for whole genome shotgun DNA sequencing projects BIOINFORMATICS. 2004 JUL 1; 20 (10): 1527-1534	1	5	12	44
66	1808 Coulson RMR, Hall N, Ouzounis CA Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum GENOME RESEARCH. 2004 AUG; 14 (8): 1548-1554	0	78	12	56
67	1955 Acharya U, Acharya JK Enzymes of sphingolipid metabolism in Drosophila melanogaster CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JAN; 62 (2): 128-142	0	12	12	140
68	2193 Ganko EW, Greene CS, Lewis JA, Bhattacharjee V, McDonald JF LTR retrotransposon-gene associations in Drosophila melanogaster JOURNAL OF MOLECULAR EVOLUTION. 2006 JAN; 62 (1): 111-120	0	11	12	51
69	2364 Small KS, Brudno M, Hill MM, Sidow A A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome GENOME BIOLOGY. 2007; 8 (3): Art. No. R41	0	9	12	39
70	2404 Rossi F, Moschetti R, Caizzi R, Corradini N, Dimitri P Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster GENETICS. 2007 FEB; 175 (2): 595-607	2	6	12	53
#	Date / Author / Journal	LCS	GCS	LCR	CR
71	2467 Yu J, Wong GKS, Liu SQ, Wang JA, Yang HM A comprehensive crop genome research project: the superhybrid rice genome project in China PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 2007 JUN 29; 362 (1482): 1023-1034	0	3	12	63
72	2486 Rabinowicz PD Plant genomic sequencing using gene-enriched libraries CHEMICAL REVIEWS. 2007 AUG; 107 (8): 3377-3390	0	0	12	158
73	2649 Muller P, Boutros M, Zeidler MP Identification of JAK/STAT pathway regulators-Insights from RNAi screens SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2008 AUG; 19 (4): 360-369	0	2	12	77
74	2754 Verleyen P, Huybrechts J, Schoofs L SIFamide illustrates the rapid evolution in Arthropod neuropeptide research GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2009 MAY 15; 162 (1): 27-35	0	3	12	45
75	2756 Aravind L, Anantharaman V, Venancio TM Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164	0	1	12	203
76	2769 Khajuria C, Zhu YC, Chen MS, Buschman LL, Higgins RA, et al. Expressed sequence tags from larval gut of the European corn borer (Ostrinia nubilalis): Exploring candidate genes potentially involved in Bacillus thuringiensis toxicity and resistance BMC GENOMICS. 2009 JUN 29; 10: Art. No. 286	0	0	12	67
77	1086 Tickoo S, Russell S Drosophila melanogaster as a model system for drug discovery and pathway screening CURRENT OPINION IN PHARMACOLOGY. 2002 OCT; 2 (5): 555-560	0	17	11	70
78	1104 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, et al. The genome sequence of the malaria mosquito Anopheles gambiae SCIENCE. 2002 OCT 4; 298 (5591): 129-+	247	827	11	52
79	1153 Gibson G, Honeycutt E The evolution of developmental regulatory pathways CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 695-700	0	7	11	42
80	1186 Blaxter ML Nematoda: Genes, genomes and the evolution of parasitism ADVANCES IN PARASITOLOGY, VOL 54. 2003; 54: 101-195	0	18	11	441
#	Date / Author / Journal	LCS	GCS	LCR	CR
81	1330 Ureta-Vidal A, Ettwiller L, Birney E Comparative genomics: Genome-wide analysis in metazoan eukaryotes NATURE REVIEWS GENETICS. 2003 APR; 4 (4): 251-262	8	117	11	100
82	1576 Escriva H, Bertrand S, Laudet V The evolution of the nuclear receptor superfamily ESSAYS IN BIOCHEMISTRY: NUCLEAR RECEPTOR SUPERFAMILY. 2004; 40: 11-26	5	49	11	58
83	1583 Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, et al. An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome GENOME BIOLOGY. 2004; 5 (1): Art. No. R3	0	1	11	34
84	1688 Havlak P, Chen R, Durbin KJ, Egan A, Ren YR, et al. The atlas genome assembly system GENOME RESEARCH. 2004 APR; 14 (4): 721-732	5	46	11	39
85	1696 Tyagi AK, Khurana JP, Khurana P, Raghuvanshi S, Gaur A, et al. Structural and functional analysis of rice genome JOURNAL OF GENETICS. 2004 APR; 83 (1): 79-99	1	12	11	255
86	1708 Baggerman G, Verleyen P, Clynen E, Huybrechts J, De Loof A, et al. Peptidomics JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2004 APR 15; 803 (1): 3-16	2	68	11	90
87	1852 Brasch MA, Hartley JL, Vidal M ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list GENOME RESEARCH. 2004 OCT; 14 (10B): 2001-2009	2	35	11	85
88	1856 Isaac RE, Taylor CA, Hamasaka Y, Nassel DR, Shirras AD Proctolin in the post-genomic era: new insights and challenges INVERTEBRATE NEUROSCIENCE. 2004 OCT; 5 (2): 51-64	2	8	11	89
89	1901 Jacquin-Joly E, Merlin C Insect olfactory receptors: Contributions of molecular biology to chemical ecology JOURNAL OF CHEMICAL ECOLOGY. 2004 DEC; 30 (12): 2359-2397	4	13	11	129
90	1950 Gregory TR The C-value enigma in plants and animals: A review of parallels and an appeal for partnership ANNALS OF BOTANY. 2005 JAN; 95 (1): 133-146	2	47	11	170
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91	1974 Bokel C, Prokop A, Brown NH Papillote and Piopio: Drosophila ZP-domain proteins required for cell adhesion to the apical extracellular matrix and microtubule organization JOURNAL OF CELL SCIENCE. 2005 FEB 1; 118 (3): 633-642	1	13	11	54
92	2081 Barbazuk WB, Bedell JA, Rabinowicz PD Reduced representation sequencing: a success in maize and a promise for other plant genomes BIOESSAYS. 2005 AUG; 27 (8): 839-848	2	13	11	77
93	2103 Bohbot J, Vogt RG Antennal expressed genes of the yellow fever mosquito (Aedes aegypti L.); characterization of odorant-binding protein 10 and takeout INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2005 SEP; 35 (9): 961-979	2	17	11	119
94	2126 Staudt N, Molitor A, Somogyi K, Mata J, Curado S, et al. Gain-of-function screen for genes that affect Drosophila muscle pattern formation PLOS GENETICS. 2005 OCT; 1 (4): Art. No. e55	0	6	11	42
95	2186 Wendl MC Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing BULLETIN OF MATHEMATICAL BIOLOGY. 2006 JAN; 68 (1): 179-196	0	5	11	54
96	2213 Jiang SY, Ramachandran S Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes PHYSIOLOGICAL GENOMICS. 2006 FEB 23; 24 (3): 235-251	1	19	11	84
97	2217 Mukherjee T, Schafer U, Zeidler MP Identification of Drosophila genes modulating janus kinase/signal transducer and activator of transcription signal transduction GENETICS. 2006 MAR; 172 (3): 1683-1697	0	4	11	86
98	2275 Yasuhara JC, Wakimoto BT Oxymoron no more: the expanding world of heterochromatic genes TRENDS IN GENETICS. 2006 JUN; 22 (6): 330-338	4	37	11	78
99	2282 Sun XT, Morozova T, Sonnenfeld M Glial and neuronal functions of the Drosophila homolog of the human SWI/SNF gene ATR-X (DATR-X) and the jing zinc-finger gene specify the lateral positioning of longitudinal glia and axons GENETICS. 2006 JUL; 173 (3): 1397-1415	0	6	11	101
100	2344 Bachtrog D, Andolfatto P Selection, recombination and demographic history in Drosophila miranda GENETICS. 2006 DEC; 174 (4): 2045-2059	1	24	11	86

Date / Author / Journal

LCS

GCS

LCR

2569 Hauser F, Cazzamali G, Williamson M, Park Y, Li B, et al.

A genome-wide inventory of neurohormone GPCRs in the red flour beetle Tribolium castaneum

FRONTIERS IN NEUROENDOCRINOLOGY. 2008 JAN; 29 (1): 142-165

171

1938 Claeys I, Poels J, Simonet G, Franssens V, Van Loy T, et al.

Insect neuropeptide and peptide hormone receptors: Current knowledge and future directions

INSECT HORMONES, VOL 73. 2005; 73: 217-+

319

2301 Hauser F, Cazzamali G, Williamson M, Blenau W, Grimmelikhuijzen CJP

A review of neurohormone GPCRs present in the fruitfly Drosophila melanogaster and the honey bee Apis mellifera

PROGRESS IN NEUROBIOLOGY. 2006 SEP; 80 (1): 1-19

126

1192 Celniker SE, Rubin GM

The Drosophila melanogaster genome

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2003; 4: 89-117

172

2147 Ashburner M, Bergman CM

Drosophila melanogaster: A case study of a model genomic sequence and its consequences

GENOME RESEARCH. 2005 DEC; 15 (12): 1661-1667

103

1216 Meeusen T, Mertens I, De Loof A, Schoofs L

G protein-coupled receptors in invertebrates: A state of the art

INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 230. 2003; 230: 189-+

259

1447 Carroll PM, Dougherty B, Ross-Macdonald P, Browman K, FitzGerald K

Model systems in drug discovery: chemical genetics meets genomics

PHARMACOLOGY & THERAPEUTICS. 2003 AUG; 99 (2): 183-220

340

2132 Ewer J

Behavioral actions of neuropeptides in invertebrates: Insights from Drosophila

HORMONES AND BEHAVIOR. 2005 NOV; 48 (4): 418-429

2306 Nassel DR, Homberg U

Neuropeptides in interneurons of the insect brain

CELL AND TISSUE RESEARCH. 2006 OCT; 326 (1): 1-24

161

2695 Singh ND, Larracuente AM, Sackton TB, Clark AG

Comparative Genomics on the Drosophila Phylogenetic Tree

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS. 2009; 40: 459-480

118

Date / Author / Journal

LCS

GCS

LCR

1223 Matthies HJG, Broadie K

Techniques to dissect cellular and subcellular function in the Drosophila nervous system

NEURONS: METHODS AND APPLICATIONS FOR THE CELL BIOLOGIST. 2003; 71: 195-265

574

1995 Matthews KA, Kaufman TC, Gelbart WM

Research resources for Drosophila: The expanding universe

NATURE REVIEWS GENETICS. 2005 MAR; 6 (3): 179-193

103

1070 Nassel DR

Neuropeptides in the nervous system of Drosophila and other insects: multiple roles as neuromodulators and neurohormones

PROGRESS IN NEUROBIOLOGY. 2002 SEP; 68 (1): 1-84

151

697

2108 Gregory TR

Synergy between sequence and size in large-scale genomics

NATURE REVIEWS GENETICS. 2005 SEP; 6 (9): 699-708

111

1189 Heckel DG

Genomics in pure and applied entomology

ANNUAL REVIEW OF ENTOMOLOGY. 2003; 48: 235-260

135

1705 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

NATURE. 2004 APR 1; 428 (6982): 493-521

752

226

1994 Venken KJT, Bellen HJ

Emerging technologies for gene manipulation in Drosophila melanogaster

NATURE REVIEWS GENETICS. 2005 MAR; 6 (3): 167-178

101

2248 Beller M, Oliver B

One hundred years of high-throughput Drosophila research

CHROMOSOME RESEARCH. 2006 MAY; 14 (4): 349-362

2541 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al.

Evolution of genes and genomes on the Drosophila phylogeny

NATURE. 2007 NOV 8; 450 (7167): 203-218

299

151

1568 Borevitz JO, Ecker JR

Plant genomics: The third wave

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 443-477

173

Date / Author / Journal

LCS

GCS

LCR

2178 Bergman CM, Quesneville H, Anxolabehere D, Ashburner M

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

GENOME BIOLOGY. 2006; 7 (11): Art. No. R112

2487 Tang H

Genome assembly, rearrangement, and repeats

CHEMICAL REVIEWS. 2007 AUG; 107 (8): 3391-3406

154

2322 Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, et al.

Insights into social insects from the genome of the honeybee Apis mellifera

NATURE. 2006 OCT 26; 443 (7114): 931-949

286

180

2542 Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, et al.

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

NATURE. 2007 NOV 8; 450 (7167): 219-232

127

125

2574 Reumer A, Van Loy T, Clynen E, Schoofs L

How functional genomics and genetics complements insect endocrinology

GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2008 JAN 1; 155 (1): 22-30

2784 Dimitri P, Caizzi R, Giordano E, Accardo MC, Lattanzi G, et al.

Constitutive heterochromatin: a surprising variety of expressed sequences

CHROMOSOMA. 2009 AUG; 118 (4): 419-435

123

177 Celniker SE

The Drosophila genome

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2000 DEC; 10 (6): 612-616

1632 Inlow JK, Restifo LL

Molecular and comparative genetics of mental retardation

GENETICS. 2004 FEB; 166 (2): 835-881

214

1836 Verleyen P, Clynen E, Huybrechts J, Van Lommel A, Bosch LV, et al.

Fraenkel's pupariation factor identified at last

DEVELOPMENTAL BIOLOGY. 2004 SEP 1; 273 (1): 38-47

2462 Ranz JM, Maurin D, Chan YS, von Grotthuss M, Hillier LW, et al.

Principles of genome evolution in the Drosophila melanogaster species group

PLOS BIOLOGY. 2007 JUN; 5 (6): Art. No. e152

127

Date / Author / Journal

LCS

GCS

LCR

1741 Bellen HJ, Levis RW, Liao GC, He YC, Carlson JW, et al.

The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes

GENETICS. 2004 JUN; 167 (2): 761-781

247

2167 Mackay TEC, Anholt RRH

Of flies and man: Drosophila as a model for human complex traits

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2006; 7: 339-367

199

2508 Diaz-Castillo C, Golic KG

Evolution of gene sequence in response to chromosomal location

GENETICS. 2007 SEP; 177 (1): 359-374

127

2522 Venken KJT, Bellen HJ

Transgenesis upgrades for Drosophila melanogaster

DEVELOPMENT. 2007 OCT 15; 134 (20): 3571-3584

151

2646 Jagge CL, Pietrantonio PV

Diuretic hormone 44 receptor in Malpighian tubules of the mosquito Aedes aegypti: evidence for transcriptional regulation paralleling urination

INSECT MOLECULAR BIOLOGY. 2008 AUG; 17 (4): 413-426

2686 Roller L, Yamanaka N, Watanabe K, Daubnerova I, Zitnan D, et al.

The unique evolution of neuropeptide genes in the silkworm Bombyx mori

INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2008 DEC; 38 (12): 1147-1157

1310 Barr MM

Super models

PHYSIOLOGICAL GENOMICS. 2003 MAR 18; 13 (1): 15-24

107

1707 Verleyen P, Huybrechts J, Sas F, Clynen E, Baggerman G, et al.

Neuropeptidomics of the grey flesh fly, Neobellieria bullata

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2004 APR 9; 316 (3): 763-770

1754 Southan C

Has the yo-yo stopped? - An assessment of human protein-coding gene number

PROTEOMICS. 2004 JUN; 4 (6): 1712-1726

1923 Biemont C, Vieira C

What transposable elements tell us about genome organization and evolution: the case of Drosophila

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 25-34

176

Date / Author / Journal

LCS

GCS

LCR

1952 Dimitri P, Corradini N, Rossi F, Verni F

The paradox of functional heterochromatin

BIOESSAYS. 2005 JAN; 27 (1): 29-41

106

2086 Fitzpatrick KA, Sinclair DA, Schulze SR, Syrzycka M, Honda BM

A genetic and molecular profile of third chromosome centric heterochromatin in Drosophila melanogaster

GENOME. 2005 AUG; 48 (4): 571-584

104

2141 Salzano FM

Evolutionary change - patterns and processes

ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. 2005 DEC; 77 (4): 627-650

145

2156 Coghlan A, Eichler EE, Oliver SG, Paterson AH, Stein L

Chromosome evolution in eukaryotes: a multi-kingdom perspective

TRENDS IN GENETICS. 2005 DEC; 21 (12): 673-682

133

2227 Singh R, Robida MD, Karimpour S

Building biological complexity with limited genes

CURRENT GENOMICS. 2006 APR; 7 (2): 97-114

195

2383 Tettweiler G, Lasko P

Investigating translation initiation using Drosophila molecular genetics

TRANSLATION INITIATION: EXTRACT SYSTEMS AND MOLECULAR GENETICS. 2007; 429: 227-242

2483 Andreyeva EN, Kolesnikova TD, Demakova OV, Mendez-Lago M, Pokholkova GV, et al.

High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUL 31; 104 (31): 12819-12824

2741 Chung H, Sztal T, Pasricha S, Sridhar M, Batterham P, et al.

Characterization of Drosophila melanogaster cytochrome P450 genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009 APR 7; 106 (14): 5731-5736

2765 Bao RY, Friedrich M

Molecular Evolution of the Drosophila Retinome: Exceptional Gene Gain in the Higher Diptera

MOLECULAR BIOLOGY AND EVOLUTION. 2009 JUN; 26 (6): 1273-1287

117

866 Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M

A question of size: the eukaryotic proteome and the problems in defining it

NUCLEIC ACIDS RESEARCH. 2002 MAR 1; 30 (5): 1083-1090

Date / Author / Journal

LCS

GCS

LCR

1191 Ashurst JL, Collins JE

Gene annotation: Prediction and testing

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2003; 4: 69-88

101

1588 Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, et al.

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

GENOME BIOLOGY. 2004; 5 (9): Art. No. R61

1879 Anholt RRH, Mackay TFC

Quantitative genetic analyses of complex behaviours in Drosophila

NATURE REVIEWS GENETICS. 2004 NOV; 5 (11): 838-849

2101 Mueller JL, Ram KR, McGraw LA, Qazi MCB, Siggia ED, et al.

Cross-species comparison of Drosophila male accessory gland protein genes

GENETICS. 2005 SEP; 171 (1): 131-143

2194 Birse RT, Johnson EC, Taghert PH, Nassel DR

Widely distributed Drosophila G-protein-coupled receptor (CG7887) is activated by endogenous tachykinin-related peptides

JOURNAL OF NEUROBIOLOGY. 2006 JAN; 66 (1): 33-46

2226 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al.

Decoding the rice genome

BIOESSAYS. 2006 APR; 28 (4): 421-432

101

2391 Corradini N, Rossi F, Giordano E, Caizzi R, Verni F, et al.

Drosophila melanogaster as a model for studying protein-encoding genes that are resident in constitutive heterochromatin

HEREDITY. 2007 JAN; 98 (1): 3-12

2527 Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ram KR, et al.

Evolution in the fast lane: Rapidly evolving sex-related genes in drosophila

GENETICS. 2007 NOV; 177 (3): 1321-1335

100

1075 Halfon MS, Michelson AM

Exploring genetic regulatory networks in metazoan development: methods and models

PHYSIOLOGICAL GENOMICS. 2002 SEP 3; 10 (3): 131-143

113

1175 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al.

Initial sequencing and comparative analysis of the mouse genome

NATURE. 2002 DEC 5; 420 (6915): 520-562

166

2474

331

Date / Author / Journal

Shotgun sequence assembly

ADVANCES IN COMPUTERS, VOL. 60. 2004; 60: 193-248

135

1584 Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, et al.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

GENOME BIOLOGY. 2004; 5 (2): Art. No. R7

117

133

1601 Hsiang T, Baillie DL

Recent progress, developments, and issues in comparative fungal genomics

CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE. 2004 JAN-MAR; 26 (1): 19-30

113

1753 Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, et al.

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

PLOS BIOLOGY. 2004 JUN; 2 (6): Art. No. e162

168

116

1790 Wendl MC, Yang SP

Gap statistics for whole genome shotgun DNA sequencing projects

BIOINFORMATICS. 2004 JUL 1; 20 (10): 1527-1534

1808 Coulson RMR, Hall N, Ouzounis CA

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

GENOME RESEARCH. 2004 AUG; 14 (8): 1548-1554

1955 Acharya U, Acharya JK

Enzymes of sphingolipid metabolism in Drosophila melanogaster

CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JAN; 62 (2): 128-142

140

2193 Ganko EW, Greene CS, Lewis JA, Bhattacharjee V, McDonald JF

LTR retrotransposon-gene associations in Drosophila melanogaster

JOURNAL OF MOLECULAR EVOLUTION. 2006 JAN; 62 (1): 111-120

2364 Small KS, Brudno M, Hill MM, Sidow A

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

GENOME BIOLOGY. 2007; 8 (3): Art. No. R41

2404 Rossi F, Moschetti R, Caizzi R, Corradini N, Dimitri P

Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster

GENETICS. 2007 FEB; 175 (2): 595-607

Date / Author / Journal

LCS

GCS

LCR

2467 Yu J, Wong GKS, Liu SQ, Wang JA, Yang HM

A comprehensive crop genome research project: the superhybrid rice genome project in China

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 2007 JUN 29; 362 (1482): 1023-1034

2486 Rabinowicz PD

Plant genomic sequencing using gene-enriched libraries

CHEMICAL REVIEWS. 2007 AUG; 107 (8): 3377-3390

158

2649 Muller P, Boutros M, Zeidler MP

Identification of JAK/STAT pathway regulators-Insights from RNAi screens

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2008 AUG; 19 (4): 360-369

2754 Verleyen P, Huybrechts J, Schoofs L

SIFamide illustrates the rapid evolution in Arthropod neuropeptide research

GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2009 MAY 15; 162 (1): 27-35

2756 Aravind L, Anantharaman V, Venancio TM

Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution

BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164

203

2769 Khajuria C, Zhu YC, Chen MS, Buschman LL, Higgins RA, et al.

Expressed sequence tags from larval gut of the European corn borer (Ostrinia nubilalis): Exploring candidate genes potentially involved in Bacillus thuringiensis toxicity and resistance

BMC GENOMICS. 2009 JUN 29; 10: Art. No. 286

1086 Tickoo S, Russell S

Drosophila melanogaster as a model system for drug discovery and pathway screening

CURRENT OPINION IN PHARMACOLOGY. 2002 OCT; 2 (5): 555-560

1104 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, et al.

The genome sequence of the malaria mosquito Anopheles gambiae

SCIENCE. 2002 OCT 4; 298 (5591): 129-+

247

827

1153 Gibson G, Honeycutt E

The evolution of developmental regulatory pathways

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 695-700

1186 Blaxter ML

Nematoda: Genes, genomes and the evolution of parasitism

ADVANCES IN PARASITOLOGY, VOL 54. 2003; 54: 101-195

441

Date / Author / Journal

LCS

GCS

LCR

1330 Ureta-Vidal A, Ettwiller L, Birney E

Comparative genomics: Genome-wide analysis in metazoan eukaryotes

NATURE REVIEWS GENETICS. 2003 APR; 4 (4): 251-262

117

100

1576 Escriva H, Bertrand S, Laudet V

The evolution of the nuclear receptor superfamily

ESSAYS IN BIOCHEMISTRY: NUCLEAR RECEPTOR SUPERFAMILY. 2004; 40: 11-26

1583 Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, et al.

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

GENOME BIOLOGY. 2004; 5 (1): Art. No. R3

1688 Havlak P, Chen R, Durbin KJ, Egan A, Ren YR, et al.

The atlas genome assembly system

GENOME RESEARCH. 2004 APR; 14 (4): 721-732

1696 Tyagi AK, Khurana JP, Khurana P, Raghuvanshi S, Gaur A, et al.

Structural and functional analysis of rice genome

JOURNAL OF GENETICS. 2004 APR; 83 (1): 79-99

255

1708 Baggerman G, Verleyen P, Clynen E, Huybrechts J, De Loof A, et al.

Peptidomics

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2004 APR 15; 803 (1): 3-16

1852 Brasch MA, Hartley JL, Vidal M

ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list

GENOME RESEARCH. 2004 OCT; 14 (10B): 2001-2009

1856 Isaac RE, Taylor CA, Hamasaka Y, Nassel DR, Shirras AD

Proctolin in the post-genomic era: new insights and challenges

INVERTEBRATE NEUROSCIENCE. 2004 OCT; 5 (2): 51-64

1901 Jacquin-Joly E, Merlin C

Insect olfactory receptors: Contributions of molecular biology to chemical ecology

JOURNAL OF CHEMICAL ECOLOGY. 2004 DEC; 30 (12): 2359-2397

129

1950 Gregory TR

The C-value enigma in plants and animals: A review of parallels and an appeal for partnership

ANNALS OF BOTANY. 2005 JAN; 95 (1): 133-146

170

Date / Author / Journal

LCS

GCS

LCR

1974 Bokel C, Prokop A, Brown NH

Papillote and Piopio: Drosophila ZP-domain proteins required for cell adhesion to the apical extracellular matrix and microtubule organization

JOURNAL OF CELL SCIENCE. 2005 FEB 1; 118 (3): 633-642

2081 Barbazuk WB, Bedell JA, Rabinowicz PD

Reduced representation sequencing: a success in maize and a promise for other plant genomes

BIOESSAYS. 2005 AUG; 27 (8): 839-848

2103 Bohbot J, Vogt RG

Antennal expressed genes of the yellow fever mosquito (Aedes aegypti L.); characterization of odorant-binding protein 10 and takeout

INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2005 SEP; 35 (9): 961-979

119

2126 Staudt N, Molitor A, Somogyi K, Mata J, Curado S, et al.

Gain-of-function screen for genes that affect Drosophila muscle pattern formation

PLOS GENETICS. 2005 OCT; 1 (4): Art. No. e55

2186 Wendl MC

Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing

BULLETIN OF MATHEMATICAL BIOLOGY. 2006 JAN; 68 (1): 179-196

2213 Jiang SY, Ramachandran S

Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes

PHYSIOLOGICAL GENOMICS. 2006 FEB 23; 24 (3): 235-251

2217 Mukherjee T, Schafer U, Zeidler MP

Identification of Drosophila genes modulating janus kinase/signal transducer and activator of transcription signal transduction

GENETICS. 2006 MAR; 172 (3): 1683-1697

2275 Yasuhara JC, Wakimoto BT

Oxymoron no more: the expanding world of heterochromatic genes

TRENDS IN GENETICS. 2006 JUN; 22 (6): 330-338

2282 Sun XT, Morozova T, Sonnenfeld M

Glial and neuronal functions of the Drosophila homolog of the human SWI/SNF gene ATR-X (DATR-X) and the jing zinc-finger gene specify the lateral positioning of longitudinal glia and axons

GENETICS. 2006 JUL; 173 (3): 1397-1415

101

100

2344 Bachtrog D, Andolfatto P

Selection, recombination and demographic history in Drosophila miranda

GENETICS. 2006 DEC; 174 (4): 2045-2059

The genome sequence of Drosophila melanogaster Papers citing 'The Genome Sequence of Drosophilia Melanogaster,' by MD Adams at al., Science 287 March 24, 2000	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 10314, GCS 125233, CR 169720 Collection span: 1999 - 2009
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