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Fri Jul 16 11:16:20 2004

Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by year, source, volume, issue, page.
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#LCRNCRNodes / Authors / DateLCSGCS
501573501 2004 NATURE REVIEWS GENETICS 5(5):345-354
Eichler EE; Clark RA; She XW
An assessment of the sequence gaps: Unfinished business in a finished human genome
00
5022127502 2004 NATURE REVIEWS GENETICS 5(5):355-365
Mittal V
Improving the efficiency of RNA interference in mammals
00
5034134503 2004 NATURE REVIEWS GENETICS 5(6):435-445
Ellegren H
Microsatellites: Simple sequences with complex evolution
00
5041386504 2004 NATURE REVIEWS GENETICS 5(6):456-465
Boffelli D; Nobrega MA; Rubin EM
Comparative genomics at the vertebrate extremes
00
505183505 2004 NEUROSCIENCE 123(1):17-29
Demarco GJ; Baghdoyan HA; Lydic R
Carbachol in the pontine reticular formation of C57BL/6J mouse decreases acetylcholine release in prefrontal cortex
00
50618506 2004 NUCLEIC ACIDS RESEARCH 32():D468-D470
Birney E; Andrews D; Bevan P; Caccamo M; Cameron G; Chen Y; Clarke L; Coates G; Cox T; Cuff J; Curwen V; Cutts T; Down T; Durbin R; Eyras E; Fernandez-Suarez XM; Gane P; Gibbins B; Gilbert J; Hammond M; Hotz H; Iyer V; Kahari A; Jekosch K; Kasprzyk A; Keefe D; Keenan S; Lehvaslaiho H; McVicker G; Melsopp C; Meidl P; Mongin E; Pettett R; Potter S; Proctor G; Rae M; Searle S; Slater G; Smedley D; Smith J; Spooner W; Stabenau A; Stalker J; Storey R; Ureta-Vidal A; Woodwark C; Clamp M; Hubbard T
Ensembl 2004
02
507224507 2004 NUCLEIC ACIDS RESEARCH 32():D471-D475
Nagashima T; Matsuda H; Silva DG; Petrovsky N; Konagaya A; Schonbach C
FREP: a database of functional repeats in mouse cDNAs
00
50829508 2004 NUCLEIC ACIDS RESEARCH 32():D476-D481
Bult CJ; Blake JA; Richardson JE; Kadin JA; Eppig JT
The Mouse Genome Database (MGD): integrating biology with the genome
02
50959509 2004 NUCLEIC ACIDS RESEARCH 32():D493-D496
Karolchik D; Hinrichs AS; Furey TS; Roskin KM; Sugnet CW; Haussler D; Kent WJ
The UCSC Table Browser data retrieval tool
00
510315510 2004 NUCLEIC ACIDS RESEARCH 32():D502-D504
Kikuno R; Nagase T; Nakayama M; Koga H; Okazaki N; Nakajima D; Ohara O
HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE
00
#LCRNCRNodes / Authors / DateLCSGCS
511221511 2004 NUCLEIC ACIDS RESEARCH 32():D523-D527
Akagi K; Suzuki T; Stephens RM; Jenkins NA; Copeland NG
RTCGD: retroviral tagged cancer gene database
03
512115512 2004 NUCLEIC ACIDS RESEARCH 32():D552-D556
Visel A; Thaller C; Eichele G
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
00
513228513 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M
The mouse Gene Expression Database (GXD): updates and enhancements
02
514328514 2004 NUCLEIC ACIDS RESEARCH 32(2):776-783
Meyer IM; Durbin R
Gene structure conservation aids similarity based gene prediction
00
515244515 2004 NUCLEIC ACIDS RESEARCH 32(5):1731-1737
Kondrashov FA; Ogurtsov AY; Kondrashov AS
Bioinformatical assay of human gene morbidity
00
516360516 2004 NUCLEIC ACIDS RESEARCH 32(5):1774-1782
Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals
00
517150517 2004 NUCLEIC ACIDS RESEARCH 32(9):2912-2924
Osipovich AB; White-Grindley EK; Hicks GG; Roshon MJ; Shaffer C; Moore JH; Ruley HE
Activation of cryptic 3 ' splice sites within introns of cellular genes following gene entrapment
00
518140518 2004 OPTOMETRY AND VISION SCIENCE 81(2):99-110
Schaeffel F; Burkhardt E; Howland HC; Williams RW
Measurement of refractive state and deprivation myopia in two strains of mice
11
519352519 2004 PHARMACOGENETICS 14(1):1-18
Nelson DR; Zeldin DC; Hoffman SMG; Maltais LJ; Wain HM; Nebert DW
Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants
04
520214520 2004 PHARMACOGENOMICS JOURNAL 4(1):5-8
Mattingly CJ; Colby GT; Rosenstein MC; Forrest JN; Boyer JL
Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD)
00
#LCRNCRNodes / Authors / DateLCSGCS
521235521 2004 PLANT PHYSIOLOGY 135(2):607-610
Gutman BL; Niyogi KK
Chlamydomonas and Arabidopsis. A dynamic duo
00
522422522 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(4):992-997
Crawford GE; Holt IE; Mullikin JC; Tai D; Green ED; Wolfsberg TG; Collins FS
Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites
00
523157523 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(6):1748-1753
Hong HK; Chakravarti A; Takahashi JS
The gene for soluble N-ethylmaleimide sensitive factor attachment protein alpha is mutated in hydrocephaly with hop gait (hyh) mice
02
524631524 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(7):1916-1921
Istrail S; Sutton GG; Florea L; Halpern AL; Mobarry CM; Lippert R; Walenz B; Shatkay H; Dew I; Miller JR; Flanigan MJ; Edwards NJ; Bolanos R; Fasulo D; Halldorsson BV; Hannenhalli S; Turner R; Yooseph S; Lu F; Nusskern DR; Shue BC; Zheng XQH; Zhong F; Delcher AL; Huson DH; Kravitz SA; Mouchard L; Reinert K; Remington KA; Clark AG; Waterman MS; Eichler EE; Adams MD; Hunkapiller MW; Myers EW; Venter JC
Whole-genome shotgun assembly and comparison of human genome assemblies
00
525239525 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2241-2246
Pan Y; Kislinger T; Gramolini AO; Zvaritch E; Kranias EG; MacLennan DH; Emili A
Identification of biochemical adaptations in hyper-or hypocontractile hearts from phospholamban mutant mice by expression proteomics
00
526136526 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2584-2589
Malnic B; Godfrey PA; Buck LB
The human olfactory receptor gene family
01
527237527 2004 PROTEIN SCIENCE 13(2):422-430
Bingle CD; Leclair EE; Havard S; Bingle L; Gillingham P; Craven CJ
Phylogenetic and evolutionary analysis of the PLUNC gene family
00
528134528 2004 PROTEINS-STRUCTURE FUNCTION AND GENETICS 54(3):583-595
Heuser P; Wohlfahrt G; Schomburg D
Efficient methods for filtering and ranking fragments for the prediction of structurally variable regions in proteins
00
529778529 2004 PROTEOMICS 4(6):1712-1726
Southan C
Has the yo-yo stopped? - An assessment of human protein-coding gene number
00
530258530 2004 REPRODUCTION FERTILITY AND DEVELOPMENT 16(1-2):79-85
Ko MSH
Embryogenomics of pre-implantation mammalian development: current status
00
#LCRNCRNodes / Authors / DateLCSGCS
531146531 2004 REPRODUCTION FERTILITY AND DEVELOPMENT 16(1-2):87-92
Blomberg LA; Zuelke KA
Serial analysis of gene expression (SAGE) during porcine embryo development
00
532229532 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(5):757-765
Galante PAF; Sakabe NJ; Kirschbaum-Slager N; De Souza SJ
Detection and evaluation of intron retention events in the human transcriptome
00
533169533 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(5):828-840
Carmel I; Tal S; Vig I; Ast G
Comparative analysis detects dependencies among the 5 ' splice-site positions
11
534235534 2004 SCIENCE 303(5657):537-540
Emerson JJ; Kaessmann H; Betran E; Long MY
Extensive gene traffic on the mammalian X chromosome
01
535584535 2004 SCIENCE 303(5664):1626-1632
Kazazian HH
Mobile elements: Drivers of genome evolution
03
5361237536 2004 SCIENCE 304(5675):1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; Mattick JS; Haussler D
Ultraconserved elements in the human genome
00
53718537 2004 SCIENTIST 18(12):28-29
Secko D
Computing gene regulation
00
538176538 2004 TOXICOLOGICAL SCIENCES 77(1):19-34
Ellinger-Ziegelbauer H; Stuart B; Wahle B; Bomann W; Ahr HJ
Characteristic expression profiles induced by genotoxic carcinogens in rat liver
00
5392103539 2004 TOXICOLOGY LETTERS 150(1):29-42
Liu-Stratton YL; Roy S; Sen CK
DNA microarray technology in nutraceutical and food safety
00
540367540 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET
Interrogating the transcriptome
01
#LCRNCRNodes / Authors / DateLCSGCS
541539541 2004 TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M
Dynamic transcriptome of mice
00
542225542 2004 TRENDS IN GENETICS 20(1):1-4
Kreahling J; Graveley BR
The origins and implications of Aluternative splicing
11
543248543 2004 TRENDS IN GENETICS 20(1):9-14
Furano AV; Duvernell DD; Boissinot S
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
00
544436544 2004 TRENDS IN GENETICS 20(2):62-67
Zhang ZL; Carriero N; Gerstein M
Comparative analysis of processed pseudogenes in the mouse and human genomes
00
545419545 2004 TRENDS IN GENETICS 20(5):229-232
Semon M; Duret L
Evidence that functional transcription units cover at least half of the human genome
00
546222546 2004 TRENDS IN GENETICS 20(5):232-236
Wen F; Li F; Xia HY; Lu X; Zhang XG; Li YD
The impact of very short alternative splicing on protein structures and functions in the human genome
00
547116547 2004 TRENDS IN PARASITOLOGY 20(2):49-52
Mongin E; Louis C; Holt RA; Birney E; Collins FH
The Anopheles gambiae genome: an update
12
548222548 2004 TRENDS IN PHARMACOLOGICAL SCIENCES 25(2):64-66
Tinsley JH; Yuan SY; Wilson E
Isoform-specific knockout of endothelial myosin light chain kinase: closing the gap on inflammatory lung disease
00
549259549 2004 VISION RESEARCH 44(16):1857-1867
Schmucker C; Schaeffel F
A paraxial schematic eye model for the growing C57BL/6 mouse
00

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