| # | Cited
nodes | Nodes / Authors | GCS | LCS |
| 1 | 1 | 1 2001 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 57():1747-1751
Osipiuk J; Gornicki P; Maj L; Dementieva I; Laskowski R; Joachimiak A
Streptococcus pneumonia YlxR at 1.35 angstrom shows a putative new fold | 1 | 0
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| 2 | 2 | 2 2001 ANNUAL REPORTS IN MEDICINAL CHEMISTRY, VOL 36 36():201-210
Pollock S; Safer HM
Chapter 20. Bioinformatics in the drug discovery process | 0 | 0
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| 3 | 2 | 3 2001 ANNUAL REVIEW OF MICROBIOLOGY 55():709-742
Koonin EV; Makarova KS; Aravind L
Horizontal gene transfer in prokaryotes: Quantification and classification | 28 | 5
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| 4 | 1 | 4 2001 BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1506(3):147-162
Castresana J
Comparative genomics and bioenergetics | 1 | 0
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| 5 | 1 | 5 2001 BIOINFORMATICS 17(9):821-828
Zmasek CM; Eddy SR
A simple algorithm to infer gene duplication and speciation events on a gene tree | 1 | 0
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| 6 | 1 | 6 2001 COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE III-SCIENCES DE LA VIE-LIFE SCIENCES 324(12):1067-1076
Forterre P
Genomics and early cellular evolution. The origin of the DNA world | 3 | 0
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| 7 | 1 | 7 2001 CURRENT BIOLOGY 11(15):R584-R587
Krylov DM; Koonin EV
A novel family of predicted retroviral-like aspartyl proteases with a possible key role in eukaryotic cell cycle control | 2 | 0
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| 8 | 1 | 8 2001 CURRENT OPINION IN CHEMICAL BIOLOGY 5(4):402-408
Mittl PRE; Grutter MG
Structural genomics: opportunities and challenges | 15 | 1
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| 9 | 2 | 9 2001 CURRENT OPINION IN GENETICS & DEVELOPMENT 11(3):247-257
Sreekumar KR; Aravind L; Koonin EV
Computational analysis of human disease-associated genes and their protein products | 7 | 1
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| 10 | 1 | 10 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(3):354-363
Teichmann SA; Murzin AG; Chothia C
Determination of protein function, evolution and interactions by structural genomics | 20 | 1
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| 11 | 1 | 11 2001 DRUG DISCOVERY TODAY 6(15):S72-S80
Freiberg C
Novel computational methods in anti-microbial target identification | 3 | 1
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| 12 | 1 | 12 2001 FEBS LETTERS 503(1):1-6
Daiyasu H; Osaka K; Ishino Y; Toh H
Expansion of the zinc metallo-hydrolase family of the beta- lactamase fold | 4 | 0
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| 13 | 1 | 13 2001 GENE 278(1-2):253-264
Soppa J
Prokaryotic structural maintenance of chromosomes (SMC) proteins: distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins | 7 | 1
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| 14 | 1 | 14 2001 GENOME RESEARCH 11(3):356-372
Wolf YI; Rogozin IB; Kondrashov AS; Koonin EV
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context | 25 | 8
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| 15 | 1 | 15 2001 GLYCOBIOLOGY 11(8):655-661
Albermann C; Piepersberg W
Expression and identification of the RfbE protein from Vibrio cholerae O1 and its use for the enzymatic synthesis of GDP-D- perosamine | 1 | 0
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| 16 | 1 | 16 2001 JOURNAL OF BACTERIOLOGY 183(20):6140-6143
Bhaya D; Takahashi A; Shahi P; Grossman AR
Novel motility mutants of Synechocystis strain PCC 6803 generated by in vitro transposon mutagenesis | 2 | 0
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| 17 | 1 | 17 2001 JOURNAL OF BACTERIOLOGY 183(21):6422-6428
Brody MS; Vijay K; Price CW
Catalytic function of an alpha/beta hydrolase is required for energy stress activation of the sigma(B) transcription factor in Bacillus subtilis | 5 | 0
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| 18 | 1 | 18 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(36):33336-33344
Baulande S; Lasnier F; Lucas M; Pairault J
Adiponutrin, a transmembrane protein corresponding to a novel dietary- and obesity-linked mRNA specifically expressed in the adipose lineage | 3 | 0
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| 19 | 1 | 19 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(40):37612-37620
Cheong CG; Escalante-Semerena JC; Rayment I
Structural investigation of the biosynthesis of alternative lower ligands for cobamides by nicotinate mononucleotide: 5,6- Dimethylbenzimidazole phosphoribosyltransferase from Salmonella enterica | 3 | 0
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| 20 | 1 | 20 2001 JOURNAL OF CELL BIOLOGY 155(5):705-710
Mushegian A; Medzhitov R
Evolutionary perspective on innate immune recognition | 6 | 0
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| 21 | 1 | 21 2001 JOURNAL OF MOLECULAR BIOLOGY 314(5):1041-1052
Remm M; Storm CEV; Sonnhammer ELL
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons | 8 | 0
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| 22 | 1 | 22 2001 MICROBIOLOGY-SGM 147():2643-2649
Chetouani F; Glaser P; Kunst F
FindTarget: software for subtractive genome analysis | 2 | 0
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| 23 | 1 | 23 2001 MOLECULAR BIOLOGY 35(6):862-866
Sadovskaya NS; Laikova ON; Mironov AA; Gelfand MS
Study of regulation of long-chain fatty acid metabolism using computer analysis of complete bacterial genomes | 1 | 0
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| 24 | 1 | 24 2001 MOLECULAR DIAGNOSIS 6(4):243-252
Subramanian G; Mural R; Hoffman SL; Venter JC; Broder S
Microbial disease in humans: A genomic perspective | 2 | 0
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| 25 | 1 | 25 2001 MOLECULAR MICROBIOLOGY 41(4):757-774
Price CW; Fawcett P; Ceremonie H; Su N; Murphy CK; Youngman P
Genome-wide analysis of the general stress response in Bacillus subtilis | 16 | 0
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| 26 | 1 | 26 2001 NATURE 413(6858):852-856
McClelland M; Sanderson KE; Spieth J; Clifton SW; Latreille P; Courtney L; Porwollik S; Ali J; Dante M; Du FY; Hou SF; Layman D; Leonard S; Nguyen C; Scott K; Holmes A; Grewal N; Mulvaney E; Ryan E; Sun H; Florea L; Miller W; Stoneking T; Nhan M; Waterston R; Wilson RK
Complete genome sequence of Salmonella enterica serovar typhimurium LT2 | 93 | 3
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| 27 | 1 | 27 2001 NEW ZEALAND JOURNAL OF CROP AND HORTICULTURAL SCIENCE 29(4):301-307
McPartland JM; Glass M
Nematicidal effects of hemp (Cannabis sativa) may not be mediated by cannabinoid receptors | 0 | 0
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| 28 | 2 | 28 2001 NUCLEIC ACIDS RESEARCH 29(1):11-16
Wheeler DL; Church DM; Lash AE; Leipe DD; Madden TL; Pontius JU; Schuler GD; Schriml LM; Tatusova TA; Wagner L; Rapp BA
Database resources of the National Center for Biotechnology Information | 81 | 4
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| 29 | 0 | 29 2001 NUCLEIC ACIDS RESEARCH 29(1):22-28
Tatusov RL; Natale DA; Garkavtsev IV; Tatusova TA; Shankavaram UT; Rao BS; Kiryutin B; Galperin MY; Fedorova ND; Koonin EV
The COG database: new developments in phylogenetic classification of proteins from complete genomes | 137 | 137
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| 30 | 2 | 30 2001 NUCLEIC ACIDS RESEARCH 29(1):29-32
Barker WC; Garavelli JS; Hou ZL; Huang HZ; Ledley RS; McGarvey PB; Mewes HW; Orcutt BC; Pfeiffer F; Tsugita A; Vinayaka CR; Xiao CL; Yeh LSL; Wu C
Protein Information Resource: a community resource for expert annotation of protein data | 32 | 2
|
| 31 | 2 | 31 2001 NUCLEIC ACIDS RESEARCH 29(1):41-43
Haft DH; Loftus BJ; Richardson DL; Yang F; Eisen JA; Paulsen IT; White O
TIGRFAMs: a protein family resource for the functional identification of proteins | 22 | 5
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| 32 | 1 | 32 2001 NUCLEIC ACIDS RESEARCH 29(1):44-48
Apweiler R; Biswas W; Fleischmann W; Kanapin A; Karavidopoulou Y; Kersey P; Kriventseva EV; Mittard V; Mulder N; Phan I; Zdobnov E
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes | 27 | 2
|
| 33 | 2 | 33 2001 NUCLEIC ACIDS RESEARCH 29(1):52-54
Wu CH; Xiao CL; Hou ZL; Huang HZ; Barker WC
iProClass: an integrated, comprehensive and annotated protein classification database | 9 | 2
|
| 34 | 2 | 34 2001 NUCLEIC ACIDS RESEARCH 29(1):123-125
Peterson JD; Umayam LA; Dickinson T; Hickey EK; White O
The Comprehensive Microbial Resource | 12 | 2
|
| 35 | 1 | 35 2001 NUCLEIC ACIDS RESEARCH 29(1):246-254
Bakheet T; Frevel M; Williams BRG; Greer W; Khabar KSA
ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins | 24 | 0
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| 36 | 1 | 36 2001 PLASMID 46(1):60-64
McGee JE; Bejcek BE
A cryptic plasmid from pasteurella multocida has a predicted protein nearly identical to a transport protein from Actinobacillus actinomycetemcomitans | 1 | 0
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| 37 | 1 | 37 2001 RIBONUCLEASES, PT A 341():3-28
Aravind L; Koonin EV
A natural classification of ribonucleases | 8 | 0
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| 38 | 1 | 38 2001 SCIENCE 291(5507):1260-+
Roos DS
Computational biology - Bioinformatics - Trying to swim in a sea of data | 13 | 0
|
| 39 | 2 | 39 2001 SCIENCE 294(5550):2317-2323
Wood DW; Setubal JC; Kaul R; Monks DE; Kitajima JP; Okura VK; Zhou Y; Chen L; Wood GE; Almeida NF; Woo L; Chen YC; Paulsen IT; Eisen JA; Karp PD; Bovee D; Chapman P; Clendenning J; Deatherage G; Gillet W; Grant C; Kutyavin T; Levy R; Li MJ; McClelland E; Palmieri A; Raymond C; Rouse G; Saenphimmachak C; Wu ZN; Romero P; Gordon D; Zhang SP; Yoo HY; Tao YM; Biddle P; Jung M; Krespan W; Perry M; Gordon-Kamm B; Liao L; Kim S; Hendrick C; Zhao ZY; Dolan M; Chumley F; Tingey SV; Tomb JF; Gordon MP; Olson MV; Nester EW
The genome of the natural genetic engineer Agrobacterium tumefaciens C58 | 36 | 2
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| 40 | 2 | 40 2001 SCIENCE 294(5550):2323-2328
Goodner B; Hinkle G; Gattung S; Miller N; Blanchard M; Qurollo B; Goldman BS; Cao YW; Askenazi M; Halling C; Mullin L; Houmiel K; Gordon J; Vaudin M; Iartchouk O; Epp A; Liu F; Wollam C; Allinger M; Doughty D; Scott C; Lappas C; Markelz B; Flanagan C; Crowell C; Gurson J; Lomo C; Sear C; Strub G; Cielo C; Slater S
Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58 | 29 | 1
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| 41 | 1 | 41 2001 STRUCTURE 9(11):1095-1106
Zhang RG; Skarina T; Katz JE; Beasley S; Khachatryan A; Vyas S; Arrowsmith CH; Clarke S; Edwards A; Joachimiak A; Savchenko A
Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase | 2 | 0
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| 42 | 1 | 42 2001 TRENDS IN GENETICS 17(8):425-428
Skovgaard M; Jensen LJ; Brunak S; Ussery D; Krogh A
On the total number of genes and their length distribution in complete microbial genomes | 12 | 3
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| 43 | 1 | 43 2001 TRENDS IN MOLECULAR MEDICINE 7(11):494-502
Yaspo ML
Taking a functional genomics approach in molecular medicine | 4 | 0
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| 44 | 1 | 44 2002 ACTA BIOCHIMICA ET BIOPHYSICA SINICA 34(1):88-94
Shi SY; Ding DF
A evolutionary approach to identification of orthologous relationship across proteomes | 0 | 0
|
| 45 | 1 | 45 2002 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 58():875-877
Raftery J; Helliwell JR
Spoilt for choice: protein target selection in a time of plenty | 0 | 0
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| 46 | 2 | 46 2002 ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 41(16):2879-2890
Breinbauer R; Vetter IR; Waldmann H
From protein domains to drug candidates - Natural products as guiding principles in the design and synthesis of compound libraries | 1 | 0
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| 47 | 1 | 47 2002 ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 82(1-4):29-58
Klaenhammer T; Altermann E; Arigoni F; Bolotin A; Breidt F; Broadbent J; Cano R; Chaillou S; Deutscher J; Gasson M; van de Guchte M; Guzzo J; Hartke A; Hawkins T; Hols P; Hutkins R; Kleerebezem M; Kok J; Kuipers O; Lubbers M; Maguin E; McKay L; Mills D; Nauta A; Overbeek R; Pel H; Pridmore D; Saier M; van Sinderen D; Sorokin A; Steele J; O'Sullivan D; de Vos W; Weimer B; Zagorec M; Siezen R
Discovering lactic acid bacteria by genomics | 1 | 0
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| 48 | 1 | 48 2002 AQUATIC LIVING RESOURCES 15(3):193-196
Parrington J; Coward K
Use of emerging genomic and proteomic technologies in fish physiology | 0 | 0
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| 49 | 1 | 49 2002 ARCHIVES OF MICROBIOLOGY 178(6):506-516
Rabus R; Kube M; Beck A; Widdel F; Reinhardt R
Genes involved in the anaerobic degradation of ethylbenzene in a denitrifying bacterium, strain EbN1 | 1 | 0
|
| 50 | 1 | 50 2002 BIOCHEMISTRY 41(37):11109-11117
Daigle DM; Rossi L; Berghuis AM; Aravind L; Koonin EV; Brown ED
YjeQ, an essential, conserved, uncharacterized protein from Escherichia coli, is an unusual GTPase with circularly permuted G-motifs and marked burst kinetics | 0 | 0
|
| 51 | 1 | 51 2002 BIOESSAYS 24(4):371-381
Ceulemans H; Stalmans W; Bollen M
Regulator-driven functional diversification of protein phosphatase-1 in eukaryotic evolution | 5 | 0
|
| 52 | 1 | 52 2002 BIOINFORMATICS 18():S116-S127
Gambin A; Lasota S; Szklarczyk R; Tiuryn J; Tyszkiewicz J
Contextual alignment of biological sequences (Extended abstract) | 0 | 0
|
| 53 | 1 | 53 2002 BIOINFORMATICS 18(8):1143-1144
Chetouani F; Glaser P; Kunst F
DiffTool: building, visualizing and querying protein clusters | 0 | 0
|
| 54 | 4 | 54 2002 CURRENT OPINION IN STRUCTURAL BIOLOGY 12(3):409-416
Rost B
Did evolution leap to create the protein universe? | 3 | 1
|
| 55 | 1 | 55 2002 EUROPEAN JOURNAL OF BIOCHEMISTRY 269(17):4267-4276
Nordling E; Jornvall H; Persson B
Medium-chain dehydrogenases/reductases (MDR) - Family characterizations including genome comparisons and active site modelling | 0 | 0
|
| 56 | 1 | 56 2002 EUROPEAN JOURNAL OF BIOCHEMISTRY 269(22):5738-5745
Larroy C; Pares X; Biosca JA
Characterization of a Saccharomyces cerevisiae NADP(H)- dependent alcohol dehydrogenase (ADHVII), a member of the cinnamyl alcohol dehydrogenase family | 0 | 0
|
| 57 | 1 | 57 2002 FASEB JOURNAL 16(12):1623-1629
Kumanovics A; Levin G; Blount P
Family ties of gated pores: evolution of the sensor module | 0 | 0
|
| 58 | 1 | 58 2002 FEBS LETTERS 512(1-3):80-84
Scheide D; Huber R; Friedrich T
The proton-pumping NADH : ubiquinone oxidoreductase (complex 1) of Aquifex aeolicus | 0 | 0
|
| 59 | 1 | 59 2002 FEBS LETTERS 518(1-3):173-176
Adams H; Teertstra W; Koster M; Tommassen J
PspE (phage-shock protein E) os Escherichia coli is a rhodanese | 2 | 0
|
| 60 | 1 | 60 2002 FREE RADICAL BIOLOGY AND MEDICINE 32(12):1254-1263
Zharkov DO; Grollman AP
Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases | 1 | 1
|
| 61 | 3 | 61 2002 FUNCTIONAL MICROBIAL GENOMICS 33():3-26
Parkhill J
Annotation of microbial genomes | 0 | 0
|
| 62 | 1 | 62 2002 GENE 293(1-2):141-148
Eisenberg I; Barash M; Kahan T; Mitrani-Rosenbaum S
Cloning and characterization of a human novel gene C9orf19 encoding a conserved putative protein with an SCP-like extracellular protein domain | 0 | 0
|
| 63 | 1 | 63 2002 GENOME RESEARCH 12(5):689-700
Bao QY; Tian YQ; Li W; Xu ZY; Xuan ZY; Hu SN; Dong W; Yang J; Chen YJ; Xue YF; Xu Y; Lai XQ; Huang L; Dong XZ; Ma YH; Ling LJ; Tan HR; Chen RS; Wang J; Yu J; Yang HM
A complete sequence of the T tengcongensis genome | 7 | 0
|
| 64 | 1 | 64 2002 GENOME RESEARCH 12(6):962-968
Jordan IK; Rogozin IB; Wolf YI; Koonin EV
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria | 2 | 0
|
| 65 | 1 | 65 2002 INFECTION AND IMMUNITY 70(8):4124-4131
Boechat N; Lagier-Roger B; Petit S; Bordat Y; Rauzier J; Hance AJ; Gicquel B; Reyrat JM
Disruption of the gene homologous to mammalian Nramp1 in Mycobacterium tuberculosis does not affect virulence in mice | 0 | 0
|
| 66 | 4 | 66 2002 INFECTION AND IMMUNITY 70(12):6817-6827
Ariel N; Zvi A; Grosfeld H; Gat O; Inbar Y; Velan B; Cohen S; Shafferman A
Search for potential vaccine candidate open reading frames in the Bacillus anthracis virulence plasmid pXO1: In silico and in vitro screening | 0 | 0
|
| 67 | 1 | 67 2002 JOURNAL OF BACTERIOLOGY 184(17):4920-4924
Hudson ME; Zhang DC; Nodwell JR
Membrane association and kinase-like motifs of the RamC protein of Streptomyces coelicolor | 1 | 0
|
| 68 | 2 | 68 2002 JOURNAL OF BACTERIOLOGY 184(18):5158-5169
Boltner D; MacMahon C; Pembroke JT; Strike P; Osborn AM
R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements | 4 | 0
|
| 69 | 1 | 69 2002 JOURNAL OF BACTERIOLOGY 184(20):5733-5745
Ma J; Campbell A; Karlin S
Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures | 1 | 0
|
| 70 | 1 | 70 2002 JOURNAL OF BACTERIOLOGY 184(22):6109-6114
Gaidenko TA; Kim TJ; Price CW
The PrpC serine-threonine phosphatase and PrkC kinase have opposing physiological roles in stationary-phase Bacillus subtilis cells | 0 | 0
|
| 71 | 2 | 71 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(22):19811-19816
Gilboa R; Zharkov DO; Golan G; Fernandes AS; Gerchman SE; Matz E; Kycia JH; Grollman AP; Shoham G
Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA | 6 | 0
|
| 72 | 1 | 72 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(25):22853-22862
Zhang CS; Stratmann A; Block O; Bruckner R; Podeschwa M; Altenbach HJ; Wehmeier UF; Piepersberg W
Biosynthesis of the C-7-cyclitol moiety of acarbose in Actinoplanes species SE50/110 - 7-O-phosphorylation of the initial cyclitol precursor leads to proposal of a new biosynthetic pathway | 0 | 0
|
| 73 | 1 | 73 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(28):25090-25095
Bishop AC; Xu JM; Johnson RC; Schimmel P; de Crecy-Lagard V
Identification of the tRNA-dihydrouridine synthase family | 1 | 0
|
| 74 | 2 | 74 2002 JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 42(2):405-407
Schmidt S; Bork P; Dandekar T
A versatile structural domain analysis server using profile weight matrices | 0 | 0
|
| 75 | 1 | 75 2002 JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 771(1-2):261-287
Sinchaikul S; Sookkheo B; Topanuruk S; Juan HF; Phutrakul S; Chen ST
Bioinformatics, functional genomics, and proteomics study of Bacillus sp. | 0 | 0
|
| 76 | 1 | 76 2002 JOURNAL OF COMPUTATIONAL BIOLOGY 9(2):169-191
Barash Y; Friedman N
Context-specific Bayesian clustering for gene expression data | 0 | 0
|
| 77 | 1 | 77 2002 JOURNAL OF MICROBIOLOGICAL METHODS 49(3):275-284
Ball KD; Trevors JT
Bacterial genomics: the use of DNA microarrays and bacterial artificial chromosomes | 3 | 0
|
| 78 | 2 | 78 2002 JOURNAL OF MOLECULAR BIOLOGY 317(1):41-72
Leipe DD; Wolf YI; Koonin EV; Aravind L
Classification and evolution of P-loop GTPases and related ATPases | 11 | 0
|
| 79 | 1 | 79 2002 JOURNAL OF MOLECULAR BIOLOGY 320(4):855-881
Cheek S; Zhang H; Grishin NV
Sequence and structure classification of kinases | 3 | 0
|
| 80 | 1 | 80 2002 JOURNAL OF MOLECULAR BIOLOGY 322(1):53-64
Liu JF; Tan HP; Rost B
Loopy proteins appear conserved in evolution | 2 | 1
|
| 81 | 3 | 81 2002 JOURNAL OF MOLECULAR EVOLUTION 55(6):632-637
Garcia-Vallve S; Simo FX; Montero MA; Arola L; Romeu A
Simultaneous horizontal gene transfer of a gene coding for ribosomal protein L27 and operational genes in Arthrobacter sp. | 0 | 0
|
| 82 | 1 | 82 2002 JOURNAL OF PROTEOME RESEARCH 1(3):239-252
VerBerkmoes NC; Bundy JL; Hauser L; Asano KG; Razumovskaya J; Larimer F; Hettich RL; Stephenson JL
Integrating "top-down" and "bottom-up" mass spectrometric approaches for proteomic analysis of Shewanella oneidensis | 3 | 0
|
| 83 | 1 | 83 2002 MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS 66(2):272-+
Meidanis J; Braga MDV; Verjovski-Almeida S
Whole-genome analysis of transporters in the plant pathogen Xylella fastidiosa | 1 | 0
|
| 84 | 1 | 84 2002 MOLECULAR BIOLOGY AND EVOLUTION 19(10):1645-1655
Brooks DJ; Fresco JR; Lesk AM; Singh M
Evolution of amino acid frequencies in proteins over deep time: Inferred order of introduction of amino acids into the genetic code | 1 | 0
|
| 85 | 1 | 85 2002 MOLECULAR BRAIN RESEARCH 104(2):176-183
Marvanova A; Toronen P; Storvik M; Lakso M; Castren E; Wong G
Synexpression analysis of ESTs in the rat brain reveals distinct patterns and potential drug targets | 0 | 0
|
| 86 | 1 | 86 2002 MOLECULAR MICROBIOLOGY 45(4):1029-1041
Ireland MME; Karty JA; Quardokus EM; Reilly JP; Brun YV
Proteomic analysis of the Caulobacter crescentus stalk indicates competence for nutrient uptake | 1 | 0
|
| 87 | 2 | 87 2002 MOLECULAR MICROBIOLOGY 46(2):395-409
Herrmann U; Soppa J
Cell cycle-dependent expression of an essential SMC-like protein and dynamic chromosome localization in the archaeon Halobacterium salinarum | 0 | 0
|
| 88 | 1 | 88 2002 MOLECULAR PHYLOGENETICS AND EVOLUTION 25(1):101-111
Ling LJ; Wang JH; Cui Y; Li W; Chen RS
Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms | 0 | 0
|
| 89 | 1 | 89 2002 NATURE 417(6891):797-798
von Mering C; Bork P
Genome organization: Teamed up for transcription | 2 | 0
|
| 90 | 1 | 90 2002 NUCLEIC ACIDS RESEARCH 30(1):294-298
Kawabata T; Fukuchi S; Homma K; Ota M; Araki J; Ito T; Ichiyoshi N; Nishikawa K
GTOP: a database of protein structures predicted from genome sequences | 4 | 1
|
| 91 | 1 | 91 2002 NUCLEIC ACIDS RESEARCH 30(1):306-309
Mellor JC; Yanai I; Clodfelter KH; Mintseris J; DeLisi C
Predictome: a database of putative functional links between proteins | 3 | 1
|
| 92 | 1 | 92 2002 NUCLEIC ACIDS RESEARCH 30(7):1575-1584
Enright AJ; Van Dongen S; Ouzounis CA
An efficient algorithm for large-scale detection of protein families | 3 | 1
|
| 93 | 2 | 93 2002 NUCLEIC ACIDS RESEARCH 30(10):2212-2223
Rogozin IB; Makarova KS; Murvai J; Czabarka E; Wolf YI; Tatusov RL; Szekely LA; Koonin EV
Connected gene neighborhoods in prokaryotic genomes | 6 | 2
|
| 94 | 1 | 94 2002 NUCLEIC ACIDS RESEARCH 30(17):3643-3652
Ponting CP
Novel domains and orthologues of eukaryotic transcription elongation factors | 2 | 0
|
| 95 | 4 | 95 2002 NUCLEIC ACIDS RESEARCH 30(19):4264-4271
Rogozin IB; Makarova KS; Natale DA; Spiridonov AN; Tatusov RL; Wolf YI; Yin J; Koonin EV
Congruent evolution of different classes of non-coding DNA in prokaryotic genomes | 0 | 0
|
| 96 | 2 | 96 2002 NUCLEIC ACIDS RESEARCH 30(24):5382-5390
Lecompte O; Ripp R; Thierry JC; Moras D; Poch O
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale | 0 | 0
|
| 97 | 2 | 97 2002 PHARMACOGENOMICS 3(2):245-256
Dandekar T; Sauerborn R
Comparative genome analysis and pathway reconstruction | 0 | 0
|
| 98 | 2 | 98 2002 PHYSIOLOGICAL GENOMICS 11(3):165-177
Turchin A; Kohane IS
Gene homology resources on the World Wide Web | 0 | 0
|
| 99 | 1 | 99 2002 PLANT MOLECULAR BIOLOGY 48(1-2):59-74
Reiser L; Mueller LA; Rhee SY
Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems | 1 | 0
|
| 100 | 1 | 100 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(7):4668-4673
Smoot JC; Barbian KD; Van Gompel JJ; Smoot LM; Chaussee MS; Sylva GL; Sturdevant DE; Ricklefs SM; Porcella SF; Parkins LD; Beres SB; Campbell DS; Smith TM; Zhang Q; Kapur V; Daly JA; Veasy LG; Musser JM
Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks | 26 | 0
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| # | Cited
nodes | Nodes / Authors | GCS | LCS |
| 101 | 3 | 101 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(9):5890-5895
Snel B; Bork P; Huynen MA
The identification of functional modules from the genomic association of genes | 7 | 1
|
| 102 | 2 | 102 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(9):5993-5998
Kihara D; Zhang Y; Lu H; Kolinski A; Skolnick J
Ab initio protein structure prediction to a genomic scale: Application to the Mycoplasma genitalium genome | 2 | 0
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| 103 | 1 | 103 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(12):7980-7985
Shin DH; Yokota H; Kim R; Kim SH
Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus | 0 | 0
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| 104 | 1 | 104 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(22):14422-14427
Schell MA; Karmirantzou M; Snel B; Vilanova D; Berger B; Pessi G; Zwahlen MC; Desiere F; Bork P; Delley M; Pridmore RD; Arigoni F
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract | 1 | 0
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| 105 | 1 | 105 2002 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 29(5):760-765
Liu R; Wang YL; Zhu XP; Ling LJ; Han RS
The application of Fisher linear discriminant to distance between genomes which based on COGs | 0 | 0
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| 106 | 1 | 106 2002 PROTEINS-STRUCTURE FUNCTION AND GENETICS 48(1):1-14
Aravind L; Anantharaman V; Koonin EV
Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA world | 1 | 0
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| 107 | 1 | 107 2002 PROTEINS-STRUCTURE FUNCTION AND GENETICS 48(1):75-84
Kinch LN; Grishin NV
Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity | 0 | 0
|
| 108 | 1 | 108 2002 PROTEINS-STRUCTURE FUNCTION AND GENETICS 49(1):71-81
Bharath MMS; Chandra NR; Rao MRS
Prediction of an HMG-box fold in the C-terminal domain of histone H1: Insights into its role in DNA condensation | 0 | 0
|
| 109 | 1 | 109 2002 PROTEOMICS 2(3):288-305
O'Neill EE; Brock CJ; von Kriegsheim AF; Pearce AC; Dwek RA; Watson SP; Hebestreit HF
Towards complete analysis of the platelet proteome | 1 | 0
|
| 110 | 1 | 110 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(3):296-306
Hall TA; Brown JW
Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins | 1 | 0
|
| 111 | 2 | 111 2002 STRUCTURE 10(2):195-204
Martinez-Cruz LA; Dreyer MK; Boisvert DC; Yokota H; Martinez-Chantar ML; Kim R; Kim SH
Crystal structure of MJ1247 protein from M-jannaschii at 2.0 angstrom resolution infers a molecular function of 3-hexulose- 6-phosphate isomerase | 2 | 0
|
| 112 | 1 | 112 2002 STRUCTURE 10(11):1593-1601
Ostheimer GJ; Barkan A; Matthews BW
Crystal structure of E-coli YhbY: A representative of a novel class of RNA binding proteins | 0 | 0
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| 113 | 1 | 113 2002 THEORETICAL POPULATION BIOLOGY 61(4):367-390
Karlin S; Brocchieri L; Trent J; Blaisdell BE; Mrazek J
Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes | 0 | 0
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| 114 | 3 | 114 2002 THEORETICAL POPULATION BIOLOGY 61(4):409-422
Forterre P; Brochier C; Philippe H
Evolution of the archaea | 0 | 0
|
| 115 | 2 | 115 2002 THEORETICAL POPULATION BIOLOGY 61(4):435-447
Jordan IK; Rogozin IB; Wolf YI; Koonin EV
Microevolutionary genomics of bacteria | 0 | 0
|
| 116 | 2 | 116 2002 THEORETICAL POPULATION BIOLOGY 61(4):481-487
Eisen JA; Wu M
Phylogenetic analysis and gene functional predictions: Phylogenomics in action | 0 | 0
|
| 117 | 3 | 117 2002 TRENDS IN BIOTECHNOLOGY 20(10):407-410
Teichmann SA; Babu MM
Conservation of gene co-regulation in prokaryotes and eukaryotes | 1 | 0
|
| 118 | 1 | 118 2002 TRENDS IN GENETICS 18(1):1-5
Brochier C; Bapteste E; Moreira D; Philippe H
Eubacterial phylogeny based on translational apparatus proteins | 10 | 3
|
| 119 | 2 | 119 2002 TRENDS IN GENETICS 18(4):176-179
Yanai I; Mellor JC; DeLisi C
Identifying functional links between genes using conserved chromosomal proximity | 0 | 0
|
| 120 | 1 | 120 2002 TRENDS IN GENETICS 18(5):236-238
Forterre P
A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein | 2 | 1
|
| 121 | 4 | 121 2002 TRENDS IN GENETICS 18(9):472-479
Wolf YI; Rogozin IB; Grishin NV; Koonin EV
Genome trees and the Tree of Life | 1 | 0
|
| 122 | 1 | 122 2002 TUBERCULOSIS 82(2-3):85-90
Fu LM; Fu-Liu CS
Is Mycobacterium tuberculosis a closer relative to Gram- positive or Gram-negative bacterial pathogens? | 0 | 0
|
| 123 | 1 | 123 2003 APPLIED AND ENVIRONMENTAL MICROBIOLOGY 69(1):154-161
Gardan R; Duche O; Leroy-Setrin S; Labadie J
Role of ctc from Listetia monocytogenes in osmotolerance | 0 | 0
|
| 124 | 1 | 124 2003 CURRENT BIOLOGY 13(2):129-133
Levesque M; Shasha D; Kim W; Surette MG; Benfey PN
Trait-to-gene: A computational method for predicting the function of uncharacterized genes | 0 | 0
|
| 125 | 5 | 125 2003 CURRENT OPINION IN CHEMICAL BIOLOGY 7(1):5-11
Liu JF; Rost B
Domains, motifs and clusters in the protein universe | 0 | 0
|
| 126 | 1 | 126 2003 GENOME RESEARCH 13(2):145-158
Pride DT; Meinersmann RJ; Wassenaar TM; Blaser MJ
Evolutionary implications of microbial genome tetranucleotide frequency biases | 0 | 0
|
| 127 | 1 | 127 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(9):6673-6679
Borza T; Iancu CV; Pike E; Honzatko RB; Fromm HJ
Variations in the response of mouse isozymes of adenylosuccinate synthetase to inhibitors of physiological relevance | 0 | 0
|
| 128 | 1 | 128 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(9):7540-7552
Chhabra SR; Shockley KR; Conners SB; Scott KL; Wolfinger RD; Kelly RM
Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima | 0 | 0
|
| 129 | 1 | 129 2003 LANCET 361(9359):743-749
Makino K; Oshima K; Kurokawa K; Yokoyama K; Uda T; Tagomori K; Iijima Y; Najima M; Nakano M; Yamashita A; Kubota Y; Kimura S; Yasunaga T; Honda T; Shinagawa H; Hattori M; Iida T
Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae | 0 | 0
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| 130 | 2 | 130 2003 MOLECULAR MICROBIOLOGY 47(1):103-118
Eriksson S; Lucchini S; Thompson A; Rhen M; Hinton JCD
Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica | 0 | 0
|
| 131 | 2 | 131 2003 MOLECULAR PLANT-MICROBE INTERACTIONS 16(2):159-168
Vinuesa P; Neumann-Silkow F; Pacios-Bras C; Spaink HP; Martinez-Romero E; Werner D
Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness | 0 | 0
|
| 132 | 3 | 132 2003 NUCLEIC ACIDS RESEARCH 31(1):58-62
Uchiyama I
MBGD: microbial genome database for comparative analysis | 0 | 0
|
| 133 | 1 | 133 2003 NUCLEIC ACIDS RESEARCH 31(1):164-171
Overbeek R; Larsen N; Walunas T; D'Souza M; Pusch G; Selkov E; Liolios K; Joukov V; Kaznadzey D; Anderson I; Bhattacharyya A; Burd H; Gardner W; Hanke P; Kapatral V; Mikhailova N; Vasieva O; Osterman A; Vonstein V; Fonstein M; Ivanova N; Kyrpides N
The ERGO (TM) genome analysis and discovery system | 0 | 0
|
| 134 | 2 | 134 2003 NUCLEIC ACIDS RESEARCH 31(1):187-189
Garcia-Vallve S; Guzman E; Montero MA; Romeu A
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes | 0 | 0
|
| 135 | 1 | 135 2003 NUCLEIC ACIDS RESEARCH 31(1):207-211
Frishman D; Mokrejs M; Kosykh D; Kastenmuller G; Kolesov G; Zubrzycki I; Gruber C; Geier B; Kaps A; Albermann K; Volz A; Wagner C; Fellenberg M; Heumann K; Mewes HW
The PEDANT genome database | 0 | 0
|
| 136 | 2 | 136 2003 NUCLEIC ACIDS RESEARCH 31(1):258-261
von Mering C; Huynen M; Jaeggi D; Schmidt S; Bork P; Snel B
STRING: a database of predicted functional associations between proteins | 0 | 0
|
| 137 | 1 | 137 2003 NUCLEIC ACIDS RESEARCH 31(1):266-269
Munch R; Hiller K; Barg H; Heldt D; Linz S; Wingender E; Jahn D
PRODORIC: prokaryotic database of gene regulation | 0 | 0
|
| 138 | 1 | 138 2003 NUCLEIC ACIDS RESEARCH 31(4):1234-1244
Babu MM; Teichmann SA
Evolution of transcription factors and the gene regulatory network in Escherichia coli | 0 | 0
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