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Mon Jun 28 11:54:45 2004
"Prediction of plant microRNA targets"
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP
CELL
110 (4): 513-520 AUG 23 2002
and the citing papers

Nodes: 100
Authors: 284, Journals: 50, Outer References: 2010
Collection span: 2002 - 2004
View: Overview. Sorted by year, source, volume, issue, page.
#LCRNCRNodes / Authors / DateLCSGCS
11291 2002 BIOFUTUR (228):45-51
Michot B; Gautheret D
Non-messenger RNA: The hidden face of genomes
00
20492 2002 CELL 110(4):513-520
Rhoades MW; Reinhart BJ; Lim LP; Burge CB; Bartel B; Bartel DP
Prediction of plant microRNA targets
9999
31133 2002 CURRENT BIOLOGY 12(20):R688-R690
Moss EG; Poethig RS
MicroRNAs: Something new under the Sun
07
41524 2002 CURRENT OPINION IN CHEMICAL BIOLOGY 6(6):829-834
Agami R
RNAi and related mechanisms and their potential use for therapy
017
52915 2002 CURRENT OPINION IN CHEMICAL BIOLOGY 6(6):835-843
Huttenhofer A; Brosius J; Bachellerie JP
RNomics: identification and function of small, non-messenger RNAs
28
62596 2002 EMBO JOURNAL 21(24):6832-6841
Aufsatz W; Mette MF; van der Winden J; Matzke M; Matzke AJM
HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA
315
71147 2002 NATURE 420(6917):732-732
Dennis C
Small RNAs - The genome's guiding hand?
01
811078 2002 NATURE REVIEWS GENETICS 3(10):737-747
McManus MT; Sharp PA
Gene silencing in mammals by small interfering RNAs
10187
91579 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(23):15228-15233
Mallory AC; Reinhart BJ; Bartel D; Vance VB; Bowman LH
A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco
1928
1013910 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(24):15524-15529
Calin GA; Dumitru CD; Shimizu M; Bichi R; Zupo S; Noch E; Aldler H; Rattan S; Keating M; Rai K; Rassenti L; Kipps T; Negrini M; Bullrich F; Croce CM
Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
932
#LCRNCRNodes / Authors / DateLCSGCS
1111011 2002 SCIENCE 297(5588):1831-1831
Reinhart BJ; Bartel DP
Small RNAs correspond to centromere heterochromatic repeats
2172
121912 2002 SCIENCE 297(5589):2002-2003
Baulcombe D
An RNA microcosm
210
1312013 2002 TRENDS IN PLANT SCIENCE 7(11):473-475
Jones L
Revealing micro-RNAs in plants
12
1429514 2003 ANNUAL REPORTS IN MEDICINAL CHEMISTRY, VOL 38 38():261-274
Shamoon BM; Reinhard C
RNAi: When interfering is a plus
00
15115615 2003 ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY 19():119-140
Zik M; Irish VF
Flower development: Initiation, differentiation, and diversification
00
16104416 2003 CELL 115(7):787-798
Lewis BP; Shih IH; Jones-Rhoades MW; Bartel DP; Burge CB
Prediction of mammalian microRNA targets
612
1715617 2003 CURRENT BIOLOGY 13(9):R368-R374
Doerner P
Plant meristems: A merry-go-round of signals
01
1842318 2003 CURRENT BIOLOGY 13(9):784-789
Xie ZX; Kasschau KD; Carrington JC
Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
2329
1964819 2003 CURRENT BIOLOGY 13(10):807-818
Ambros V; Lee RC; Lavanway A; Williams PT; Jewell D
MicroRNAs and other tiny endogenous RNAs in C-elegans
2335
2012220 2003 CURRENT BIOLOGY 13(17):1524-1530
Ito T; Sakai H; Meyerowitz EM
Whorl-specific expression of the SUPERMAN gene of Arabidopsis is mediated by cis elements in the transcribed region
01
#LCRNCRNodes / Authors / DateLCSGCS
2123121 2003 CURRENT BIOLOGY 13(20):1768-1774
Emery JF; Floyd SK; Alvarez J; Eshed Y; Hawker NP; Izhaki A; Baum SF; Bowman JL
Radial patterning of Arabidopsis shoots by class IIIHD-ZIP and KANADI genes
1417
2232022 2003 CURRENT BIOLOGY 13(21):R851-R852
Hake S
MicroRNAs: A role in plant development
01
23149423 2003 CURRENT BIOLOGY 13(23):R925-R936
Lai EC
microRNAs: Runts of the genome assert themselves
07
2456224 2003 CURRENT OPINION IN CHEMICAL BIOLOGY 7(4):516-523
Ke XS; Liu CM; Liu DP; Liang CC
MicroRNAs: key participants in gene regulatory networks - Commentary
02
2545325 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(4):372-378
Hunter C; Poethig RS
miSSING LINKS: miRNAs and plant development
34
26210326 2003 CURRENT OPINION IN MOLECULAR THERAPEUTICS 5(3):217-224
Paddison PJ; Hannon GJ
siRNAs and shRNAs: Skeleton keys to the human genome
07
2737527 2003 DEVELOPMENT 130(24):6001-6012
Schmid M; Uhlenhaut NH; Godard F; Demar M; Bressan R; Weigel D; Lohmann JU
Dissection of floral induction pathways using global expression analysis
02
2835628 2003 DEVELOPMENTAL CELL 4(2):205-217
Kasschau KD; Xie ZX; Allen E; Llave C; Chapman EJ; Krizan KA; Carrington JC
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
3146
29910329 2003 DEVELOPMENTAL CELL 5(2):337-350
Aravin AA; Lagos-Quintana M; Yalcin A; Zavolan M; Marks D; Snyder B; Gaasterland T; Meyer J; Tuschl T
The small RNA profile during Drosophila melanogaster development
1320
3015030 2003 EMBO JOURNAL 22(3):633-640
Szittya G; Silhavy D; Molnar A; Havelda Z; Lovas A; Lakatos L; Banfalvi Z; Burgyan J
Low temperature inhibits RNA silencing-mediated defence by the control of siRNA generation
112
#LCRNCRNodes / Authors / DateLCSGCS
3127331 2003 GENES & DEVELOPMENT 17(1):49-63
Tang GL; Reinhart BJ; Bartel DP; Zamore PD
A biochemical framework for RNA silencing in plants
4899
3257232 2003 GENES & DEVELOPMENT 17(8):991-1008
Lim LP; Lau NC; Weinstein EG; Abdelhakim A; Yekta S; Rhoades MW; Burge CB; Bartel DP
The microRNAs of Caenorhabditis elegans
2949
3385233 2003 GENOME BIOLOGY 4(7):-
Lai EC; Tomancak P; Williams RW; Rubin GM
Computational identification of Drosophila microRNA genes
014
34167534 2003 JOURNAL OF CELL SCIENCE 116(23):4689-4693
Finnegan EJ; Matzke MA
The small RNA world
34
35511435 2003 JOURNAL OF KOREAN MEDICAL SCIENCE 18(3):309-318
Kim VN
RNA interference in functional genomics and medicine
02
361224036 2003 MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS 67(4):657-+
Agrawal N; Dasaradhi PVN; Mohmmed A; Malhotra P; Bhatnagar RK; Mukherjee SK
RNA interference: Biology, mechanism, and applications
02
3733637 2003 MOLECULAR CELL 11(5):1253-1263
Grad Y; Aach J; Hayes GD; Reinhart BJ; Church GM; Ruvkun G; Kim J
Computational and experimental identification of C-elegans microRNAs
1519
3854038 2003 NATURE 423(6942):838-842
Kawasaki H; Taira K
Hes1 is a target of microRNA-23 during retinoic-acid-induced neuronal differentiation of NT2 cells
1023
3931039 2003 NATURE 425(6955):244-245
Benfey PN
Molecular biology - MicroRNA is here to stay
11
4064040 2003 NATURE 425(6955):257-263
Palatnik JF; Allen E; Wu XL; Schommer C; Schwab R; Carrington JC; Weigel D
Control of leaf morphogenesis by microRNAs
2437
#LCRNCRNodes / Authors / DateLCSGCS
4121341 2003 NATURE GENETICS 34(3):261-262
Seitz H; Youngson N; Lin SP; Dalbert S; Paulsen M; Bachellerie JP; Ferguson-Smith AC; Cavaille J
Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene
513
4254042 2003 NUCLEIC ACIDS RESEARCH 31(17):4973-4980
Boutla A; Delidakis C; Tabler M
Developmental defects by antisense-mediated inactivation of micro-RNAs 2 and 13 in Drosophila and the identification of putative target genes
46
4333543 2003 PLANT AND CELL PHYSIOLOGY 44(12):1350-1358
Ohashi-Ito K; Fukuda H
HD-Zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation
22
4426344 2003 PLANT CELL 15(6):1360-1374
Qi YJ; Ding B
Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA
03
4544045 2003 PLANT CELL 15(11):2730-2741
Aukerman MJ; Sakai H
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
1521
4677846 2003 PLANT CELL REPORTS 22(3):167-174
Yu H; Kumar PP
Post-transcriptional gene silencing in plants by RNA
01
4765047 2003 PLANT PHYSIOLOGY 132(2):709-717
Bartel B; Bartel DP
MicroRNAs: At the root of plant development?
1223
4854848 2003 PLANT PHYSIOLOGY 132(3):1382-1390
Papp I; Mette MF; Aufsatz W; Daxinger L; Schauer SE; Ray A; van der Winden J; Matzke M; Matzke AJM
Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors
1018
4995349 2003 PLOS BIOLOGY 1(3):397-409
Stark A; Brennecke J; Russell RB; Cohen SM
Identification of Drosophila MicroRNA targets
12
5025350 2003 PLOS BIOLOGY 1(3):420-428
Lippman Z; May B; Yordan C; Singer T; Martienssen R
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
00
#LCRNCRNodes / Authors / DateLCSGCS
5123951 2003 RNA-A PUBLICATION OF THE RNA SOCIETY 9(2):175-179
Lagos-Quintana M; Rauhut R; Meyer J; Borkhardt A; Tuschl T
New microRNAs from mouse and human
2446
5211852 2003 RNA-A PUBLICATION OF THE RNA SOCIETY 9(3):277-279
Ambros V; Bartel B; Bartel DP; Burge CB; Carrington JC; Chen XM; Dreyfuss G; Eddy SR; Griffiths-Jones S; Marshall M; Matzke M; Ruvkun G; Tuschl T
A uniform system for microRNA annotation
2539
5333453 2003 RNA-A PUBLICATION OF THE RNA SOCIETY 9(10):1274-1281
Krichevsky AM; King KS; Donahue CP; Khrapko K; Kosik KS
A microRNA array reveals extensive regulation of microRNAs during brain development
813
54104054 2003 SCIENCE 301(5631):336-338
Carrington JC; Ambros V
Role of microRNAs in plant and animal development
1542
55167055 2003 TRENDS IN BIOCHEMICAL SCIENCES 28(10):534-540
Nelson P; Kiriakidou M; Sharma A; Maniataki E; Mourelatos Z
The microRNA world: small is mighty
48
5612956 2003 TRENDS IN GENETICS 19(1):13-16
Kidner CA; Martienssen RA
Macro effects of microRNAs in plants
49
5727557 2003 TRENDS IN GENETICS 19(1):39-46
Cerutti H
RNA interference: traveling in the cell and gaining functions?
527
5821958 2003 TRENDS IN PLANT SCIENCE 8(7):307-309
Voinnet O
RNA silencing bridging the gaps in wheat extracts
22
5913159 2004 ARCHIVES OF VIROLOGY 149(2):397-406
Markarian N; Li HW; Ding SW; Semancik JS
RNA silencing as related to viroid induced symptom expression
00
6042860 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26(1):31-38
Landry P; Thompson D; Perreault JP
The role of viroids in gene silencing: the model case of Peach latent mosaic viroid
00
#LCRNCRNodes / Authors / DateLCSGCS
612013261 2004 CELL 116(2):281-297
Bartel DP
MicroRNAs: Genomics, biogenesis, mechanism, and function
719
6271862 2004 CURRENT BIOLOGY 14(4):346-351
Vazquez F; Gasciolli V; Crete P; Vaucheret H
The nuclear dsRNA binding protein HYL1 is required for MicroRNA accumulation and plant development, but not posttranscriptional transgene silencing
11
63229563 2004 CURRENT GENOMICS 5(3):191-205
Tam W
MicroRNAs: Tiny but not trivial
00
64135964 2004 CURRENT OPINION IN CELL BIOLOGY 16(2):127-133
Nakahara K; Carthew RW
Expanding roles for miRNAs and siRNAs in cell regulation
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6578865 2004 CURRENT OPINION IN PLANT BIOLOGY 7(1):11-19
Steimer A; Schob H; Grossniklaus U
Epigenetic control of plant development: new layers of complexity
00
66165366 2004 CURRENT OPINION IN PLANT BIOLOGY 7(2):120-125
Mallory AC; Vaucheret H
MicroRNAs: something important between the genes
00
6752967 2004 DEVELOPMENTAL BIOLOGY 267(2):529-535
Rajewsky N; Socci ND
Computational identification of microRNA targets
01
6894368 2004 DIFFERENTIATION 72(2-3):74-80
Gesellchen V; Boutros M
Managing the genome: microRNAs in Drosophila
00
69166669 2004 GENES & DEVELOPMENT 18(10):1165-1178
Kiriakidou M; Nelson PT; Kouranov A; Fitziev P; Bouyioukos C; Mourelatos Z; Hatzigeorgiou A
A combined computational-experimental approach predicts human microRNA targets
00
7094970 2004 GENES & DEVELOPMENT 18(10):1179-1186
Chapman EJ; Prokhnevsky AI; Gopinath K; Dolja VV; Carrington JC
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step
00
#LCRNCRNodes / Authors / DateLCSGCS
71116171 2004 GENES & DEVELOPMENT 18(10):1187-1197
Vaucheret H; Vazquez F; Crete P; Bartel DP
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
00
7288972 2004 GENOME BIOLOGY 5(1):-
Enright AJ; John B; Gaul U; Tuschl T; Sander C; Marks DS
MicroRNA targets in Drosophila
00
7334573 2004 IUBMB LIFE 56(2):95-100
Krol J; Krzyzosiak WJ
Structural aspects of microRNA biogenesis
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7442174 2004 M S-MEDECINE SCIENCES 20(4):399-401
Cavaille J
MicroRNA are everywhere
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7545875 2004 MOLECULAR PLANT PATHOLOGY 5(1):71-82
Moissiard G; Voinnet O
Viral suppression of RNA silencing in plants
00
7689476 2004 NACHRICHTEN AUS DER CHEMIE 52(3):292-305
Strater N; Maier T; Skerra A; Schurrle K; Schepers U
Biochemistry and molecular biology 2003
00
7753077 2004 NATURE 428(6978):81-84
Kidner CA; Martienssen RA
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
12
7862778 2004 NATURE 428(6978):84-88
Juarez MT; Kui JS; Thomas J; Heller BA; Timmermans MCP
microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
01
7931279 2004 NATURE 428(6982):485-486
Floyd SK; Bowman JL
Gene regulation: Ancient microRNA target sequences in plants
00
8041580 2004 NATURE NEUROSCIENCE 7(2):100-102
Sengupta P
Taking sides in the nervous system with miRNA
11
#LCRNCRNodes / Authors / DateLCSGCS
81134481 2004 NATURE REVIEWS GENETICS 5(5):396-400
Bartel DP; Chen CZ
Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs
00
82412082 2004 NATURE REVIEWS MOLECULAR CELL BIOLOGY 5(5):379-391
Fukuda H
Signals that control plant vascular cell differentiation
00
8362783 2004 NUCLEIC ACIDS RESEARCH 32():D109-D111
Griffiths-Jones S
The microRNA Registry
05
8474284 2004 NUCLEIC ACIDS RESEARCH 32(4):-
Schmittgen TD; Jiang JM; Liu Q; Yang LQ
A high-throughput method to monitor the expression of microRNA precursors
00
85114185 2004 NUCLEIC ACIDS RESEARCH 32(5):1688-1695
Wang JF; Zhou H; Chen YQ; Luo QJ; Qu LH
Identification of 20 microRNAs from Oryza sativa
00
8675486 2004 PLANT AND CELL PHYSIOLOGY 45(4):369-385
Zhong RQ; Ye ZH
amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels
00
8786387 2004 PLANT CELL 16(5):1302-1313
Chen J; Li WX; Xie DX; Peng JR; Ding SW
Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of MicroRNA in host gene expression
00
8875388 2004 PLANT JOURNAL 37(5):762-769
Denti MA; Boutla A; Tsagris M; Tabler M
Short interfering RNAs specific for potato spindle tuber viroid are found in the cytoplasm but not in the nucleus
00
89613389 2004 PLANT MOLECULAR BIOLOGY 54(2):157-174
Susi P; Hohkuri M; Wahlroos T; Kilby NJ
Characteristics of RNA silencing in plants: similarities and differences across kingdoms
00
9014090 2004 PLANT SCIENCE 166(4):929-940
Kumar S; Rai SK; Pandey-Rai S; Srivastava S; Singh D
Regulation of unipinnate character in the distal tendrilled domain of compound leaf-blade by the gene MULTIFOLIATE PINNA (MFP) in pea Pisum sativum
00
#LCRNCRNodes / Authors / DateLCSGCS
9156991 2004 PLANTA 218(5):683-692
Bolle C
The role of GRAS proteins in plant signal transduction and development
00
92118192 2004 PLOS BIOLOGY 2(5):642-652
Xie ZX; Johansen LK; Gustafson AM; Kasschau KD; Lellis AD; Zilberman D; Jacobsen SE; Carrington JC
Genetic and functional diversification of small RNA pathways in plants
00
9366993 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(1):360-365
Kim J; Krichevsky A; Grad Y; Hayes GD; Kosik KS; Church GM; Ruvkun G
Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
02
9475294 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(4):1093-1098
Han MH; Goud S; Song L; Fedoroff N
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation
22
9562695 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(2):171-175
Lai EC; Wiel C; Rubin GM
Complementary miRNA pairs suggest a regulatory role for miRNA : miRNA duplexes
11
9654696 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(3):387-394
Nelson PT; Hatzigeorgiou AG; Mourelatos Z
miRNP : mRNA association in polyribosomes in a human neuronal cell line
12
97147597 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(3):544-550
Meister G; Landthaler M; Dorsett Y; Tuschl T
Sequence-specific inhibition of microRNA-and siRNA-induced RNA silencing
01
9826698 2004 TRENDS IN BIOTECHNOLOGY 22(5):232-237
Edwards D; Batley J
Plant bioinformatics: from genome to phenome
00
9957599 2004 TRENDS IN GENETICS 20(4):188-195
Grant-Downton RT; Dickinson HG
Plants, pairing and phenotypes - two's company?
00
1001291100 2004 TRENDS IN PLANT SCIENCE 9(2):76-83
Silhavy D; Burgyan J
Effects and side-effects of viral RNA silencing suppressors on short RNAs
00

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