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Mon Jul 31 15:49:42 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by year, source, volume, issue, page.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
101154101 2005 BIOCHEMICAL JOURNAL 390: 115-123
Sandy J; Mushtaq A; Holton SJ; Schartau P; Noble MEM; et al.
Investigation of the catalytic triad of arylamine N-acetyltransferases: essential residues required for acetyl transfer to arylamines
01
102119102 2005 BIOCHEMICAL SOCIETY TRANSACTIONS 33: 331-334
Puente XS; Sanchez LM; Gutierrez-Fernandez A; Velasco G; Lopez-Otin C
A genomic view of the complexity of mammalian proteolytic systems
03
103131103 2005 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1715 (2): 132-144
Yamazaki J; Okamura K; Ishibashi K; Kitamura K
Characterization of CLCA protein expressed in ductal cells of rat salivary glands
00
104123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
105185105 2005 BIOESSAYS 27 (8): 775-784
Han JS; Boeke JD
LINEA retrotransposons: modulators of quantity and quality of mammalian gene expression?
04
106177106 2005 BIOESSAYS 27 (8): 839-848
Barbazuk WB; Bedell JA; Rabinowicz PD
Reduced representation sequencing: a success in maize and a promise for other plant genomes
01
107316107 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
108131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
109126109 2005 BIOINFORMATICS 21: I351-I358
Price AL; Jones NC; Pevzner PA
De novo identification of repeat families in large genomes
00
110236110 2005 BIOINFORMATICS 21 (6): 703-710
Zheng XH; Lu F; Wang ZY; Hoover J; Mural R
Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
111122111 2005 BIOINFORMATICS 21 (9): 1789-1796
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas
02
112130112 2005 BIOINFORMATICS 21 (17): 3461-3468
Pan XK; Stein L; Brendel V
SynBrowse: a synteny browser for comparative sequence analysis
00
113129113 2005 BIOLOGY OF REPRODUCTION 72 (2): 284-292
Iwamoto Y; Kaneko T; Ichinose J; Mori T; Shibata Y; et al.
Molecular cloning of rat Spetex2 family genes mapped on chromosome 15p16, encoding a 23-kilodalton protein associated with the plasma membranes of haploid spermatids
01
114137114 2005 BIOLOGY OF REPRODUCTION 73 (2): 297-307
Blackshear PJ; Phillips RS; Ghosh S; Ramos SVB; Richfield EK; et al.
Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the tristetraprolin family of CCCH tandem zinc finger proteins
02
115142115 2005 BMC BIOINFORMATICS 6: Art. No. S6
Fang H; Tong W; Perkins R; Shi L; Hong H; et al.
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
01
116175116 2005 BMC BIOINFORMATICS 6: Art. No. 53
Blair JE; Shah P; Hedges SB
Evolutionary sequence analysis of complete eukaryote genomes
04
117333117 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
118137118 2005 BMC BIOINFORMATICS 6: Art. No. 175
Rouchka EC; Khalyfa A; Cooper NGF
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
01
119157119 2005 BMC BIOINFORMATICS 6: Art. No. 278
Rosenberg MS
Multiple sequence alignment accuracy and evolutionary distance estimation
01
120249120 2005 BMC BIOLOGY 3: Art. No. 2
Jorgensen FG; Hobolth A; Hornshoj H; Bendixen C; Fredholm M; et al.
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
04
#LCRNCRNode / Date / Journal / AuthorLCSGCS
121142121 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 32
Semple CAM; Maxwell A; Gautier P; Kilanowski FM; Eastwood H; et al.
The complexity of selection at the major primate beta-defensin locus
03
122147122 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 39
McLellan AS; Zimmermann W; Moore T
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
02
123549123 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
124133124 2005 BMC GENOMICS 6: Art. No. 11
Nalbant D; Youn H; Nalbant SI; Sharma S; Cobos E; et al.
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells
00
125322125 2005 BMC GENOMICS 6: Art. No. 70
Wernersson R; Schierup MH; Jorgensen FG; Gorodkin J; Panitz F; et al.
Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
010
126357126 2005 BMC GENOMICS 6: Art. No. 139
Otto H; Reche PA; Bazan F; Dittmar K; Haag F; et al.
In silico characterization of the family of PARP-like poly(ADP-ribosyl) transferases (pARTs)
02
127238127 2005 BMC GENOMICS 6: Art. No. 170
Smits BMG; Guryev V; Zeegers D; Wedekind D; Hedrich HJ; et al.
Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
00
128277128 2005 BRIEFINGS IN BIOINFORMATICS 6 (1): 6-22
Batzoglou S
The many faces of sequence alignment
25
129224129 2005 CELL 120 (1): 15-20
Lewis BP; Burge CB; Bartel DP
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
5156
130279130 2005 CHEMICAL RESEARCH IN TOXICOLOGY 18 (3): 403-414
Hayes KR; Bradfield RA
Advances in toxicogenomics
07
#LCRNCRNode / Date / Journal / AuthorLCSGCS
131125131 2005 CHROMOSOME RESEARCH 13 (7): 707-715
Jiang ZH; Michal JJ; Melville JS; Baltzer HL
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes
01
132126132 2005 CIRCULATION RESEARCH 97 (3): 210-218
Kaneda R; Ueno S; Yamashita Y; Choi YL; Koinuma K; et al.
Genome-wide screening for target regions of histone deacetylases in cardiomyocytes
03
133118133 2005 COMPARATIVE GENOMICS 3388: 1-14
Berard S; Bergeron A; Chauve C
Conservation of combinatorial structures in evolution scenarios
12
134196134 2005 COMPUTATIONAL BIOLOGY AND CHEMISTRY 29 (1): 1-12
Makalowska I; Lin CF; Makalowski W
Overlapping genes in vertebrate genomes
05
135148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
136364136 2005 CURRENT GENOMICS 6 (8): 589-595
Fedorova L; Fedorov A
Puzzles of the human genome: Why do we need our introns?
00
137561137 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 628-633
Adams MD
Conserved sequences and the evolution of gene regulatory signals
00
138246138 2005 CURRENT OPINION IN LIPIDOLOGY 16 (2): 179-191
Herrera VLM; Ruiz-Opazo N
Genetic studies in rat models: insights into cardiovascular disease
01
139122139 2005 DEVELOPMENTAL BRAIN RESEARCH 155 (2): 99-106
Kuwamura M; Muraguchi T; Matsui T; Ueno M; Takenaka S; et al.
Mutation at the Lmx1a locus provokes aberrant brain development in the rat
00
140121140 2005 DNA SEQUENCE 16 (2): 151-155
Osada S; Imagawa M; Nishihara T
Organization of gene structure and expression of nuclear factor 1 family in rat
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1411109141 2005 DRUG METABOLISM REVIEWS 37 (2): 279-310
Wishart DS
Bioinformatics in drug development and assessment
01
1421340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
143152143 2005 ENDOCRINOLOGY 146 (1): 406-413
Ueta Y; Fujihara H; Serino R; Dayanithi G; Ozawa H; et al.
Transgenic expression of enhanced green fluorescent protein enables direct visualization for physiological studies of vasopressin neurons and isolated nerve terminals of the rat
13
144243144 2005 EUROPEAN JOURNAL OF IMMUNOLOGY 35 (1): 261-272
Nylenna O; Naper C; Vaage JT; Woon PY; Gauguier D; et al.
The genes and gene organization of the Ly49 region of the rat natural killer cell gene complex
05
145183145 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 27-39
Kislinger T; Emili A
Multidimensional protein identification technology: current status and future prospects
00
1461145146 2005 FASEB JOURNAL 19 (12): 1602-1616
Mutch DM; Wahli W; Williamson G
Nutrigenomics and nutrigenetics: the emerging faces of nutrition
04
147154147 2005 FEBS JOURNAL 272 (19): 4884-4898
Mujica AO; Brauksiepe B; Saaler-Reinhardt S; Reuss S; Schmidt ER
Differential expression pattern of the novel serine/threonine kinase, STK33, in mice and men
00
148133148 2005 GENE 345 (1): 113-118
Hancock JM; Simon M
Simple sequence repeats in proteins and their significance for network evolution
01
149115149 2005 GENE 346: 23-28
Niimura Y; Nei M
Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages
05
150130150 2005 GENE 346: 51-61
Santini S; Bernardi G
Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
151277151 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
152242152 2005 GENE 363: 51-60
Makarova JA; Kramerov DA
Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay
01
153226153 2005 GENE 364: 45-52
Fujii Y; Itoh T; Sakate R; Koyanagi KO; Matsuya A; et al.
A web tool for comparative genomics: G-compass
00
154149154 2005 GENETICAL RESEARCH 86 (2): 127-138
Anisimov SV
A large-scale screening of the normalized mammalian mitochondrial gene expression profiles
00
155147155 2005 GENETICS 169 (4): 2179-2188
Wu Q
Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes
01
156144156 2005 GENETICS 170 (4): 1887-1896
Smits BMG; Peters TA; Mul JD; Croes HJ; Fransen JAM; et al.
Identification of a rat model for usher syndrome type 1B by N-ethyl-N-nitrosourea mutagenesis-driven forward genetics
11
157184157 2005 GENETICS 171 (3): 1161-1171
Smith JJ; Kump DK; Walker JA; Parichy DM; Voss SR
A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in ambystoma
01
158215158 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
159223159 2005 GENOME BIOLOGY 6 (4): Art. No. 216
DeCerbo J; Carmichael GG
SINEs point to abundant editing in the human genome
00
160439160 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
161259161 2005 GENOME BIOLOGY 6 (8): Art. No. r67
Haddrill PR; Charlesworth B; Halligan DL; Andolfatto P
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
09
162142162 2005 GENOME BIOLOGY 6 (10): Art. No. R83
Quignon P; Giraud M; Rimbault M; Lavigne P; Tacher S; et al.
The dog and rat olfactory receptor repertoires
02
163150163 2005 GENOME RESEARCH 15 (1): 54-66
Florea L; Di Francesco V; Miller J; Turner R; Yao A; et al.
Gene and alternative splicing annotation with AIR
03
164128164 2005 GENOME RESEARCH 15 (1): 98-110
Bourque G; Zdobnov EM; Bork P; Pevzner PA; Tesler G
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
123
165138165 2005 GENOME RESEARCH 15 (1): 111-119
Abril JF; Castelo R; Guigo R
Comparison of splice sites in mammals and chicken
01
166234166 2005 GENOME RESEARCH 15 (1): 137-145
Ovcharenko I; Loots GG; Nobrega MA; Hardison RC; Miller W; et al.
Evolution and functional classification of vertebrate gene deserts
523
167144167 2005 GENOME RESEARCH 15 (1): 166-173
Kellner WA; Sullivan RT; Carlson BH; Thomas JW
Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
01
168135168 2005 GENOME RESEARCH 15 (2): 292-301
Milosavljevic A; Harris RA; Sodergren EJ; Jackson AR; Kalafus KJ; et al.
Pooled genomic indexing of rhesus macaque
01
169663169 2005 GENOME RESEARCH 15 (7): 901-913
Cooper GM; Stone EA; Asimenos G; Green ED; Batzoglou S; et al.
Distribution and intensity of constraint in mammalian genomic sequence
28
1701192170 2005 GENOME RESEARCH 15 (8): 1034-1050
Siepel A; Bejerano G; Pedersen JS; Hinrichs AS; Hou MM; et al.
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
333
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1714103171 2005 GENOME RESEARCH 15 (8): 1051-1060
King DC; Taylor J; Elnitski L; Chiaromonte F; Miller W; et al.
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
06
172249172 2005 GENOME RESEARCH 15 (8): 1086-1094
Gaffney DJ; Keightley PD
The scale of mutational variation in the murid genome
02
173121173 2005 GENOME RESEARCH 15 (8): 1127-1135
Vinson JP; Jaffe DB; O'Neill K; Karlsson EK; Stange-Thomann N; et al.
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
07
174152174 2005 GENOME RESEARCH 15 (8): 1136-1144
Harada JN; Bower KE; Orth AP; Callaway S; Nelson CG; et al.
Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis
13
175149175 2005 GENOME RESEARCH 15 (9): 1243-1249
van de Lagemaat LN; Gagnier L; Medstrand P; Mager DL
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
03
176140176 2005 GENOME RESEARCH 15 (9): 1258-1264
Wang W; Zheng HK; Yang S; Yu HJ; Li J; et al.
Origin and evolution of new exons in rodents
03
177236177 2005 GENOME RESEARCH 15 (9): 1307-1314
Woods IG; Wilson C; Friedlander B; Chang P; Reyes DK; et al.
The zebrafish gene map defines ancestral vertebrate chromosomes
08
178251178 2005 GENOME RESEARCH 15 (11): 1519-1534
Smith AV; Thomas DJ; Munro HM; Abecasis GR
Sequence features in regions of weak and strong linkage disequilibrium
01
1796135179 2005 GENOME RESEARCH 15 (12): 1717-1728
Lazar J; Moreno C; Jacob HJ; Kwitek AE
Impact of genomics on research in the rat
00
180470180 2005 GENOME RESEARCH 15 (12): 1777-1786
Brent MR
Genome annotation past, present, and future: How to define an ORF at each locus
11
#LCRNCRNode / Date / Journal / AuthorLCSGCS
181260181 2005 GENOME RESEARCH 15 (12): 1787-1797
Webber C; Ponting CP
Hotspots of mutation and breakage in dog and human chromosomes
00
182280182 2005 GENOME RESEARCH 15 (12): 1809-1819
Pollinger JP; Bustamante CD; Fledel-Alon A; Schmutz S; Gray MM; et al.
Selective sweep mapping of genes with large phenotypic effects
00
183150183 2005 GENOMICS 85 (2): 208-220
Cho S; Beintema JJ; Zhang JZ
The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories
16
184128184 2005 GENOMICS 85 (3): 322-329
Koelsch BU; Rajewsky MF; Kindler-Rohrborn A
A 6-Mb contig-based comparative gene and linkage map of the rat schwannoma tumor suppressor region at 10q32.3
00
185133185 2005 GENOMICS 86 (3): 271-279
Tsuji AB; Sugyo A; Ogiu T; Sagara M; Kimura T; et al.
Fine mapping of radiation susceptibility and gene expression analysis of LEC congenic rat lines
13
186444186 2005 GENOMICS 86 (3): 295-305
Portnoy ME; McDermott KJ; Antonellis A; Margulies EH; Prasad AB; et al.
Detection of potential GDF6 regulatory elements by multispecies sequence comparisons and identification of a skeletal joint enhancer
00
187459187 2005 GENOMICS 86 (3): 306-315
Yang H; Shi P; Zhang YP; Zhang JZ
Composition and evolution of the V2r vorneronasal receptor gene repertoire in mice and rats
010
188259188 2005 GENOMICS 86 (6): 638-647
Puente XS; Gutierrez-Fernandez A; Ordonez GR; Hillier LDW; Lopez-Otin C
Comparative genomic analysis of human and chimpanzee proteases
01
189221189 2005 GENOMICS 86 (6): 759-766
Raymond CK; Subramanian S; Paddock M; Qiu RL; Deodato C; et al.
Targeted, haplotype-resolved resequencing of long segments of the human genome
01
190123190 2005 GLYCOBIOLOGY 15 (6): 615-624
Hamilton SR; Li HJ; Wischnewski H; Prasad A; Kerley-Hamilton JS; et al.
Intact alpha-1,2-endomannosidase is a typical type II membrane protein
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
191241191 2005 HUMAN MOLECULAR GENETICS 14 (15): 2221-2229
Kryukov GV; Schmidt S; Sunyaev S
Small fitness effect of mutations in highly conserved non-coding regions
04
192133192 2005 HYPERTENSION 45 (3): 451-459
Garrett MR; Meng HJ; Rapp JP; Joe B
Locating a blood pressure quantitative trait locus within 117 kb on the rat genome - Substitution mapping and renal expression analysis
38
193128193 2005 HYPERTENSION 45 (4): 557-564
Dutil J; Eliopoulos V; Tremblay J; Hamet P; Charron S; et al.
Multiple quantitative trait loci for blood pressure interacting epistatically and additively on Dahl rat chromosome 2
24
194135194 2005 HYPERTENSION 45 (4): 786-792
McBride MW; Brosnan MJ; Mathers J; McLellan LI; Miller WH; et al.
Reduction of Gstm1 expression in the stroke-prone spontaneously hypertension rat contributes to increased oxidative stress
15
195129195 2005 HYPERTENSION 45 (5): 947-953
Iwai N; Yasui N; Naraba H; Tago N; Yamawaki H; et al.
Klk1 as one of the genes contributing to hypertension in Dahl salt-sensitive rat
01
196438196 2005 HYPERTENSION 46 (6): 1300-1308
Charron S; Duong C; Menard A; Roy J; Eliopoulos V; et al.
Epistasis, not numbers, regulates functions of clustered Dahl rat quantitative trait loci applicable to human hypertension
00
197136197 2005 IMMUNOGENETICS 57 (10): 739-749
Rothenburg S; Haag F; Koch-Nolte F; Carter C; Graham M; et al.
Characterization of multiple alleles of the T-cell differentiation marker ART2 (RT6) in inbred and wild rats
00
198144198 2005 INTEGRATIVE AND COMPARATIVE BIOLOGY 45 (3): 405-415
Koch LG; Britton SL
Divergent selection for aerobic capacity in rats as a model for complex disease
03
199151199 2005 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 16 (6): 1057-1064
Forte A; Galderisi U; De Feo M; Quarto C; Renzulli A; et al.
Carotid arteriotomy induces different temporal gene expression profiles in normotensive and hypertensive rat strains
00
2002296200 2005 INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 247 247: 165-+
Kramerov DA; Vassetzky NS
Short retroposons in eukaryotic genomes
03

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