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Thu Jul 28 12:30:57 2005

A map of the interactome network of the metazoan C-elegans
Li SM, Armstrong CM, Bertin N, Ge H, Milstein S, et al.
SCIENCE 303 (5657): 540-543 JAN 23 2004
and the citing papers

Nodes: 143, Authors: 653, Journals: 65, Outer References: 5382, Words: 536
Collection span: 2004 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
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#LCRNCRNode / Date / Journal / AuthorLCSGCS
111451 2004 ANNUAL REVIEW OF GENETICS 38: 615-643
Taylor JS; Raes J
Duplication and divergence: The evolution of new genes and old ideas
02
211222 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 267-293
de Hoog CL; Mann M
Proteomics
05
31303 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 323 (1): 104-111
Zhao ZY; Fang LL; Johnsen R; Baillie DL
ATP-binding cassette protein E is involved in gene transcription and translation in Caenorhabditis elegans
01
41484 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 325 (2): 479-486
Gudgen M; Chandrasekaran A; Frazier T; Boyd L
Interactions within the ubiquitin pathway of Caenorhabditis elegans
00
511595 2004 BIOCHEMICAL JOURNAL 381: 1-12
Wei GH; Liu DP; Liang CC
Charting gene regulatory networks: strategies, challenges and perspectives
15
61296 2004 BIOCHIMIE 86 (9-10): 625-632
Colland F; Daviet L
Integrating a functional proteomic approach into the target discovery process
00
71807 2004 BIOESSAYS 26 (6): 629-638
Bomsztyk K; Denisenko O; Ostrowski J
HnRNP K: One protein multiple processes
014
811008 2004 BIOESSAYS 26 (12): 1333-1343
Krause R; von Mering C; Bork P; Dandekar T
Shared components of protein complexes-versatile building blocks or biochemical artefacts?
01
91339 2004 BIOINFORMATICS 20 (17): 3013-3020
King AD; Przulj N; Jurisica I
Protein complex prediction via cost-based clustering
01
1012010 2004 BIOINFORMATICS 20 (17): 3273-3276
Huang TW; Tien AC; Lee YCG; Huang WS; Lee YCG; et al.
POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome
22
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1112411 2004 BIOINFORMATICS 20 (18): 3346-3352
Albert I; Albert R
Conserved network motifs allow protein-protein interaction prediction
01
1214112 2004 BMC BIOINFORMATICS 5: Art. No. 75
Lett D; Hsing M; Pio F
Interaction profile-based protein classification of death domain
00
1312513 2004 BMC BIOINFORMATICS 5: Art. No. 179
Pellegrino M; Provero P; Silengo L; Di Cunto F
CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species
00
1418414 2004 CELL 119 (2): 157-167
Spiegelman BM; Heinrich R
Biological control through regulated transcriptional coactivators
06
1518115 2004 CURRENT GENOMICS 5 (7): 545-557
Smith KD; Thorsson V
Exploring toll-like receptor regulation of innate immunity with the tools of systems biology
00
16111116 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 602-613
Tyers M
Cell cycle goes global
00
1715117 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8 (3): 334-338
Clemons PA
Complex phenotypic assays in high-throughput screening
02
1816718 2004 CURRENT OPINION IN GENETICS & DEVELOPMENT 14 (4): 336-342
Fraser AG; Marcotte EM
Development through the eyes of functional genomics
00
1916519 2004 CURRENT OPINION IN IMMUNOLOGY 16 (4): 418-427
Zal T; Gascoigne NR
Using live FRET imaging to reveal early protein-protein interactions during T cell activation
13
2026620 2004 CURRENT OPINION IN IMMUNOLOGY 16 (5): 674-683
Zal T; Gascoigne NRJ
Using live FRET imaging to reveal early protein-protein interactions during T cell activation (vol 16, pg 418, 2004)
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2116121 2004 DRUG DEVELOPMENT RESEARCH 62 (2): 124-133
Chin KV; Selvanayagam ZE; Vittal R; Kita T; Kudoh K; et al.
Application of expression genomics in drug development and genomic medicine
00
2215222 2004 EXPERT REVIEW OF PROTEOMICS 1 (1): 111-121
Titz B; Schlesner M; Uetz P
What do we learn from high-throughput protein interaction data?
03
2318023 2004 EXPERT REVIEW OF PROTEOMICS 1 (2): 193-205
Grijoriev A
Understanding the yeast proteome: a bioinformatics perspective
00
2415524 2004 EXPERT REVIEW OF PROTEOMICS 1 (2): 239-249
Pellegrini M; Haynor D; Johnson JM
Protein interaction networks
01
2514425 2004 FEBS LETTERS 567 (1): 74-79
Castagnoli L; Costantini A; Dall'armi C; Gonfloni S; Montecchi-Palazzi L; et al.
Selectivity and promiscuity in the interaction network mediated by protein recognition modules
12
2622126 2004 GENOME BIOLOGY 5 (9): Art. No. R63
Lehner B; Fraser AG
A first-draft human protein-interaction map
010
2712527 2004 GENOME BIOLOGY 5 (10): Art. No. R84
Collins JE; Wright C; Edwards CA; Davis MP; Grinham JA; et al.
A genome annotation-driven approach to cloning the human ORFeome
01
2825628 2004 GENOME BIOLOGY 5 (12): Art. No. R96
Stanyon CA; Liu GZ; Mangiola BA; Patel N; Giot L; et al.
A Drosophila protein-interaction map centered on cell-cycle regulators
03
2915429 2004 GENOME RESEARCH 14 (6): 1107-1118
Yu HY; Luscombe NM; Lu HX; Zhu XW; Xia Y; et al.
Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs
814
3014330 2004 GENOME RESEARCH 14 (7): 1315-1323
Lehner B; Sanderson CM
A protein interaction framework for human mRNA degradation
26
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3128531 2004 GENOME RESEARCH 14 (10B): 2001-2009
Brasch MA; Hartley JL; Vidal M
ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list
16
3215732 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
3312233 2004 GENOME RESEARCH 14 (10B): 2029-2033
Uetz P; Rajagopala SV; Dong YA; Haas J
From ORFeomes to protein interaction maps in viruses
12
3413334 2004 GENOME RESEARCH 14 (10B): 2076-2082
Aguiar JC; LaBaer J; Blair PL; Shamailova VY; Koundinya M; et al.
High-throughput generation of P. falciparum functional molecules by recombinational cloning
00
3515535 2004 GENOME RESEARCH 14 (10B): 2093-2101
Deplancke B; Dupuy D; Vidal M; Walhout AJM
A gateway-compatible yeast one-hybrid system
00
3613536 2004 GENOME RESEARCH 14 (10B): 2111-2120
Cheo DL; Titus SA; Byrd DRN; Hartley JL; Temple GF; et al.
Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: Functional analysis of multi-segment expression clones
02
3713937 2004 GENOME RESEARCH 14 (10B): 2128-2135
Rual JF; Hirozane-Kishikawa T; Hao T; Bertin N; Li SM; et al.
Human ORFeome version 1.1: A platform for reverse proteomics
14
3812538 2004 GENOME RESEARCH 14 (10B): 2155-2161
Chen NS; Lawson D; Bradnam K; Harris TW; Stein LD
WormBase as an integrated platform for the C-elegans ORFeome
11
3914739 2004 GENOME RESEARCH 14 (10B): 2169-2175
Dupuy D; Li QR; Deplancke B; Boxem M; Hao T; et al.
A fist version of the Caenorhabditis elegans promoterone
13
4013640 2004 GENOME RESEARCH 14 (10B): 2190-2200
LaBaer J; Qiu QQ; Anumanthan A; Mar W; Zuo DM; et al.
The Pseudomonas aerugonisa PAO1 gene collection
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
41113541 2004 HUMAN REPRODUCTION UPDATE 10 (3): 227-239
Hennebold JD
Characterization of the ovarian transcriptome through the use of differential analysis of gene expression methodologies
00
4216842 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (43): 44533-44543
McElwee JJ; Schuster E; Blanc E; Thomas JH; Gems D
Shared transcriptional signature in Caenorhabditis elegans dauer larvae and long-lived daf-2 mutants implicates detoxification system in longevity assurance
08
4313043 2004 JOURNAL OF CELL BIOLOGY 166 (2): 167-172
Gruneberg U; Neef R; Honda R; Nigg EA; Barr FA
Relocation of Aurora B from centromeres to the central spindle at the metaphase to anaphase transition requires MKIp2
08
4417644 2004 JOURNAL OF LIPID RESEARCH 45 (10): 1793-1805
Ghazalpour A; Doss S; Yang X; Aten J; Toomey EM; et al.
Toward a biological network for atherosclerosis
01
4519045 2004 JOURNAL OF PROTEOME RESEARCH 3 (2): 167-178
Marko-Varga G; Fehniger TE
Proteomics and disease - The challenges for technology and discovery
09
4615546 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (11): 2058-2070
Jordan IK; Marino-Ramirez L; Wolf YI; Koonin EV
Conservation and coevolution in the scale-free human gene coexpression network
05
4712847 2004 NATURE 430 (6995): 88-93
Han JDJ; Bertin N; Hao T; Goldberg DS; Berriz GF; et al.
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
1131
4817848 2004 NATURE BIOTECHNOLOGY 22 (7): 911-917
Korbel JO; Jensen LJ; von Mering C; Bork P
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs
07
4912849 2004 NATURE BIOTECHNOLOGY 22 (10): 1317-1321
Aloy P; Russell RB
Ten thousand interactions for the molecular biologist
14
501850 2004 NATURE GENETICS 36 (7): 664-664
Hoffmann R; Valencia A
A gene network for navigating the literature
17
#LCRNCRNode / Date / Journal / AuthorLCSGCS
5116451 2004 NATURE NEUROSCIENCE 7 (5): 440-445
Choudhary J; Grant SGN
Proteomics in postgenomic neuroscience: the end of the beginning
05
5217752 2004 NATURE REVIEWS DRUG DISCOVERY 3 (11): 965-972
Kramer R; Cohen D
Functional genomics to new drug targets
06
5312053 2004 NUCLEIC ACIDS RESEARCH 32: W69-W72
Tan SH; Zhang Z; Ng SK
ADVICE: Automated detection and validation of interaction by co-evolution
04
5412454 2004 NUCLEIC ACIDS RESEARCH 32: W83-W88
Kelley BP; Yuan BB; Lewitter F; Sharan R; Stockwell BR; et al.
PathBLAST: a tool for alignment of protein interaction networks
08
5515255 2004 NUCLEIC ACIDS RESEARCH 32 (18): 5379-5391
Guglielmi B; van Berkum NL; Klapholz B; Bijma T; Boube M; et al.
A high resolution protein interaction map of the yeast Mediator complex
06
5613856 2004 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 8 (2): 131-152
Hakenberg J; Schmeier S; Kowald A; Klipp E; Leser U
Finding kinetic parameters using text mining
05
5713657 2004 ONCOGENE 23 (51): 8346-8352
Fraser A
Towards full employment: using RNAi to find roles for the redundant
01
5814358 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (8): 2275-2280
Tsuchisaka A; Theologis A
Heterodimeric interactions among the 1-amino-cyclopropane-1-carboxylate synthase polypeptides encoded by the Arabidopsis gene family
012
5913059 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (35): 12992-12996
van Haaften G; Vastenhouw NL; Nollen EAA; Plasterk RHA; Tijsterman M
Gene interactions in the DNA damage-response pathway identified by genome-wide RNA-interference analysis of synthetic lethality
15
6014560 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (44): 15682-15687
Wong SL; Zhang LV; Tong AHY; Li ZJ; Goldberg DS; et al.
Combining biological networks to predict genetic interactions
14
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6123561 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (52): 18006-18011
Said MR; Begley TJ; Oppenheim AV; Lauffenburger DA; Samson LD
Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae
23
6214762 2004 PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 271 (1545): 1225-1234
Promislow DEL
Protein networks, pleiotropy and the evolution of senescence
25
6323763 2004 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 31 (11): 957-964
Jiang TJ; Xue YH; Xu T
Systems biology: a new field of biological science
00
6402764 2004 SCIENCE 303 (5657): 540-543
Li SM; Armstrong CM; Bertin N; Ge H; Milstein S; et al.
A map of the interactome network of the metazoan C-elegans
142142
6512465 2004 SCIENCE 306 (5705): 2246-2249
Bowers PM; Cokus SJ; Elsenberg D; Yeates TO
Use of logic relationships to decipher protein network organization
14
6617566 2004 TRENDS IN COGNITIVE SCIENCES 8 (9): 418-425
Sporns O; Chialvo DR; Kaiser M; Hilgetag CC
Organization, development and function of complex brain networks
04
67111167 2005 AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY 288 (5): C968-C974
Strange K
The end of "naive reductionism": rise of systems biology or renaissance of physiology?
00
6824468 2005 AMERICAN NATURALIST 165 (5): 515-523
Promislow D
A regulatory network analysis of phenotypic plasticity in yeast
00
69219769 2005 ANALYTICAL CHEMISTRY 77 (12): 3771-3787
Lambert JP; Ethier M; Smith JC; Figeys D
Proteomics: from gel based to gel free
00
7014870 2005 BIOINFORMATICS 21: I302-I310
Nabieva E; Jim K; Agarwal A; Chazelle B; Singh M
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
7114771 2005 BIOINFORMATICS 21 (3): 364-378
Arnau V; Mars S; Marin I
Iterative cluster analysis of protein interaction data
00
7211272 2005 BIOINFORMATICS 21 (3): 415-417
Shegogue D; Zheng WJ
Capturing biological information with class-responsibility-collaboration cards
01
7311273 2005 BIOINFORMATICS 21 (6): 832-834
Pagel P; Kovac S; Oesterheld M; Brauner B; Dunger-Kaltenbach I; et al.
The MIPS mammalian protein-protein interaction database
00
7412074 2005 BIOINFORMATICS 21 (9): 2043-2048
Okada K; Kanaya S; Asai K
Accurate extraction of functional associations between proteins based on common interaction partners and common domains
00
7534475 2005 BIOINFORMATICS 21 (9): 2076-2082
Brown KR; Jurisica I
Online predicted human interaction database
00
7612476 2005 BIOTECHNIQUES 38 (6): 927-934
Semple JI; Prime G; Wallis LJ; Sanderson CM; Markie D
Two-hybrid reporter vectors for gap repair cloning
00
7725077 2005 BMC BIOINFORMATICS 6: Art. No. 13
Azuaje F; Wang HY; Chesneau A
Non-linear mapping for exploratory data analysis in functional genomics
00
7824078 2005 BMC BIOINFORMATICS 6: Art. No. 29
Drabkin HJ; Hollenbeck C; Hill DP; Blake JA
Ontological visualization of protein-protein interactions
00
7912979 2005 BMC BIOINFORMATICS 6: Art. No. 40
Tirosh I; Barkai N
Computational verification of protein-protein interactions by orthologous co-expression
00
8044180 2005 BMC BIOINFORMATICS 6: Art. No. 100
Patil A; Nakamura H
Filtering high-throughput protein-protein interaction data using a combination of genomic features
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8112281 2005 BMC BIOINFORMATICS 6: Art. No. 112
Hahn A; Rahnenfuhrer JR; Talwar P; Lengauer T
Confirmation of human protein interaction data by human expression data
00
8215082 2005 CELL CYCLE 4 (4): 552-555
Horswill AR; Benkovic SJ
Cyclic peptides, a chemical genetics tool for biologists
00
8313183 2005 CHEMISTRY & BIOLOGY 12 (5): 595-604
Gardiner L; Coyle BJ; Chan WC; Soultanas P
Discovery of antagonist peptides against bacterial helicase-primase interaction in B-stearothermophilus by reverse yeast three-hybrid
00
8426284 2005 CURRENT OPINION IN CELL BIOLOGY 17 (1): 3-8
Gunsalus KC; Piano F
RNAi as a tool to study cell biology: building genome-phenome bridge
00
8515885 2005 CURRENT OPINION IN CHEMICAL BIOLOGY 9 (1): 31-37
Campbell-Valois FX; Michnick S
Chemical biology on PiNs and NeeDLes
00
8619886 2005 CURRENT OPINION IN STRUCTURAL BIOLOGY 15 (1): 4-14
Piehler J
New methodologies for measuring protein interactions in vivo and in vitro
00
8715587 2005 DEVELOPMENTAL BIOLOGY 282 (2): 285-293
Chen R; Mardon G
Keeping an eye on the fly genome
00
8816988 2005 DRUG DISCOVERY TODAY 10 (9): 653-662
Nikolsky Y; Nikolskaya N; Bugrim A
Biological networks and analysis of experimental data in drug discovery
00
8915889 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 13-26
Korf U; Wiemann S
Protein microarrays as a discovery tool for studying protein-protein interactions
00
9017990 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 103-116
Cheng XD
Understanding signal transduction through functional proteomics
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9116491 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 117-128
Mukherji M
Phosphoproteomics in analyzing signaling pathways
00
9212992 2005 FEBS LETTERS 579 (2): 559-566
Zhang J; Wang Y; Zhou Y; Cao ZG; Huang PT; et al.
Yeast two-hybrid screens imply that GGNBP1, GGNBP2 and OAZ3 are potential interaction partners of testicular germ cell-specific protein GGN1
00
9323993 2005 FEBS LETTERS 579 (8): 1802-1807
Jensen LJ; Steinmetz LM
Re-analysis of data and its integration
00
9477194 2005 FEBS LETTERS 579 (8): 1821-1827
Uetz P; Finley RL
From protein networks to biological systems
02
9523195 2005 FEBS LETTERS 579 (8): 1828-1833
Cesareni G; Ceol A; Gavrila C; Palazzi LM; Persico M; et al.
Comparative interactomics
00
9656396 2005 FEBS LETTERS 579 (8): 1834-1838
Vidal M
Interactome modeling
01
9723897 2005 FEBS LETTERS 579 (8): 1854-1858
Aloy P; Russell RB
Structure-based systems biology: a zoom lens for the cell
00
9814798 2005 FEBS LETTERS 579 (8): 1867-1871
Gagneur J; Casari G
From molecular networks to qualitative cell behavior
00
9914099 2005 FEBS LETTERS 579 (8): 1872-1877
Apic G; Ignjatovic T; Boyer S; Russell RB
Illuminating drug discovery with biological pathways
00
100182100 2005 FUNGAL GENETICS AND BIOLOGY 42 (1): 81-96
Brody S
Genetics and kinetics
00

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