Nodes: 89, Authors: 369, Sources: 55, Outer References: 3699
Collection span: 2002 - 2004
View: Overview. Sorted by year, source, volume, issue, page.

#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
1	2	35	1 2002 BIOTECHNIQUES 33(6):1308-1316 Michaud GA; Snyder M Proteomic approaches for the global analysis of proteins	1	3
2	1	28	2 2002 BMC BIOINFORMATICS 3():- Robinson MD; Grigull J; Mohammad N; Hughes TR FunSpec: a web-based cluster interpreter for yeast	0	5
3	1	23	3 2002 COMPARATIVE AND FUNCTIONAL GENOMICS 3(3):221-225 [Anon] Upstream - news in genomics	0	0
4	1	86	4 2002 CURRENT GENETICS 42(2):73-84 Sunnerhagen P Prospects for functional genomics in Schizosaccharomyces pombe	0	1
5	1	39	5 2002 EMBO JOURNAL 21(24):6893-6904 Margeot A; Blugeon C; Sylvestre J; Vialette S; Jacq C; Corral-Debrinski M In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function	1	3
6	0	46	6 2002 GENES & DEVELOPMENT 16(6):707-719 Kumar A; Agarwal S; Heyman JA; Matson S; Heidtman M; Piccirillo S; Umansky L; Drawid A; Jansen R; Liu Y; Cheung KH; Miller P; Gerstein M; Roeder GS; Snyder M Subcellular localization of the yeast proteome	88	88
7	1	53	7 2002 GENES & DEVELOPMENT 16(23):3017-3033 Horak CE; Luscombe NM; Qian JA; Bertone P; Piccirrillo S; Gerstein M; Snyder M Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae	1	10
8	1	40	8 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(34):30477-30487 Portela P; Howell S; Moreno S; Rossi S In vivo and in vitro phosphorylation of two Isoforms of yeast pyruvate kinase by protein kinase A	0	1
9	1	42	9 2002 JOURNAL OF CELL BIOLOGY 159(6):945-956 Jasperson SL; Giddings TH; Winey M Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p	0	3
10	1	49	10 2002 MOLECULAR AND CELLULAR BIOLOGY 22(20):6979-6992 Krogan NJ; Kim M; Ahn SH; Zhong GQ; Kobor MS; Cagney G; Emili A; Shilatifard A; Buratowski S; Greenblatt JF RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomnics approach	2	37
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
11	1	44	11 2002 NATURE 417(6887):399-403 von Mering C; Krause R; Snel B; Cornell M; Oliver SG; Fields S; Bork P Comparative assessment of large-scale data sets of protein-protein interactions	15	131
12	1	13	12 2002 NATURE 418(6895):287-288 Lee SS; Ruvkun G Longevity - Don't hold your breath	0	6
13	1	29	13 2002 NATURE GENETICS 31(4):400-404 Steinmetz LM; Scharfe C; Deutschbauer AM; Mokranjac D; Herman ZS; Jones T; Chu AM; Giaever G; Prokisch H; Oefner PJ; Davis RW Systematic screen for human disease genes in yeast	9	44
14	1	58	14 2002 PROCEEDINGS OF THE IEEE 90(12):1848-1858 Lan N; Jansen R; Gerstein M Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions	0	0
15	1	39	15 2002 PROTEOMICS 2(12):1706-1714 Navarre C; Degand H; Bennett KL; Crawford JS; Mortz E; Boutry M Subproteomics: Identification of plasma membrane proteins from the yeast Saccharomyces cerevisiae	0	0
16	1	1	16 2002 SCIENTIST 16(8):43-43 Kling J Pushing proteomics	0	0
17	1	35	17 2002 TRENDS IN BIOCHEMICAL SCIENCES 27(11):559-563 Stagljar I; Fields S Analysis of membrane protein interactions using yeast-based technologies	0	3
18	1	30	18 2002 TRENDS IN BIOTECHNOLOGY 20(12):S14-S18 Lee YS; Mrksich M Protein chips: from concept to practice	0	4
19	1	35	19 2003 ANALYTICAL CHEMISTRY 75(15):3765-3774 Encinar JR; Ouerdane L; Buchmann W; Tortajada J; Lobinski R; Szpunar J Identification of water-soluble selenium-containing proteins in selenized yeast by size-exclusion-reversed-phase HPLC/ICPMS followed by MALDI-TOF and electrospray Q-TOF mass spectrometry	0	1
20	2	104	20 2003 ANNUAL REVIEW OF BIOCHEMISTRY 72():783-812 Zhu H; Bilgin M; Snyder M Proteomics	0	2
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
21	1	160	21 2003 ANNUAL REVIEW OF GENETICS 37():3-29 Hayes F Transposon-based strategies for microbial functional genomics and proteomics	0	0
22	1	18	22 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 303(3):771-776 Landry J; Sternglanz R Yeast Fms1 is a FAD-utilizing polyamine oxidase	0	1
23	1	28	23 2003 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 1633(1):68-74 Mo C; Milla P; Athenstaedt K; Ott R; Balliano G; Daum G; Bard M In yeast sterol biosynthesis the 3-keto reductase protein (Erg27p) is required for oxidosqualene cyclase (Erg7p) activity	0	1
24	2	69	24 2003 CELL 113(7):919-933 Peng WT; Robinson MD; Mnaimneh S; Krogan NJ; Cagney G; Morris Q; Davierwala AP; Grigull J; Yang XQ; Zhang W; Mitsakakis N; Ryan OW; Datta N; Jojic V; Pal C; Canadien V; Richards D; Beattie B; Wu LF; Altschuler SJ; Roweis S; Frey BJ; Emili A; Greenblatt JF; Hughes TR Panoramic view of yeast noncoding RNA processing	2	2
25	4	49	25 2003 CELL 115(5):629-640 Mootha VK; Bunkenborg J; Olsen JV; Hjerrild M; Wisniewski JR; Stahl E; Bolouri MS; Ray HN; Sihag S; Kamal M; Patterson N; Lander ES; Mann M Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria	1	1
26	1	17	26 2003 CHINESE SCIENCE BULLETIN 48(20):2226-2230 Cai L; Xue H; Lu HC; Zhao Y; Zhu XP; Bu DB; Ling LJ; Chen RS Analysis of correlations between protein complex and protein-protein interaction and mRNA expression	0	0
27	1	20	27 2003 COMPTES RENDUS BIOLOGIES 326(10-11):1049-1065 Zhao P; Seo JW; Wang ZY; Wang Y; Shneiderman B; Hoffman EP In vivo filtering of in vitro expression data reveals MyoD targets	0	0
28	2	55	28 2003 CURRENT OPINION IN CELL BIOLOGY 15(1):6-13 Martin AC; Drubin DG Impact of genome-wide functional analyses on cell biology research	0	0
29	1	66	29 2003 CURRENT OPINION IN CHEMICAL BIOLOGY 7(1):44-54 Lan N; Montelione GT; Gerstein M Ontologies for proteomics: towards a systematic definition of structure and function that scales to the genome level	0	4
30	1	51	30 2003 CURRENT OPINION IN CHEMICAL BIOLOGY 7(1):84-90 Turk BE; Cantley LC Peptide libraries: at the crossroads of proteomics and bioinformatics	0	4
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
31	1	303	31 2003 CURRENT TOPICS IN MEDICINAL CHEMISTRY 3(6):659-685 Rosania GR Supertargeted chemistry: Identifying relationships between molecular structures and their sub-cellular distribution	0	1
32	2	43	32 2003 EMBO JOURNAL 22(22):5975-5982 Marobbio CMT; Agrimi G; Lasorsa FM; Palmieri F Identification and functional reconstitution of yeast mitochondrial carrier for S-adenosylmethionine	0	0
33	1	62	33 2003 EUKARYOTIC CELL 2(5):886-900 Bulik DA; Olczak M; Lucero HA; Osmond BC; Robbins PW; Specht CA Chitin synthesis in Saccharomyces cerevisiae in response to supplementation of growth medium with glucosamine and cell wall stress	0	0
34	1	46	34 2003 EUROPEAN JOURNAL OF BIOCHEMISTRY 270(4):589-599 Dreger M Proteome analysis at the level of subcellular structures	1	7
35	1	24	35 2003 FEBS LETTERS 555(3):464-468 Thompson GM; Cano VSP; Valentini SR Mapping eIF5A binding sites for Dys1 and Lia1: in vivo evidence for regulation of eIF5A hypusination	0	0
36	1	220	36 2003 GENE 313():17-42 Fromont-Racine M; Senger B; Saveanu C; Fasiolo F Ribosome assembly in eukaryotes	0	0
37	1	56	37 2003 GENOME BIOLOGY 4(1):- Jimenez JL; Mitchell MP; Sgouros JG Microarray analysis of orthologous genes: conservation of the translational machinery across species at the sequence and expression level	0	0
38	4	33	38 2003 GENOME BIOLOGY 4(6):- Heazlewood JL; Millar AH; Day DA; Whelan J What makes a mitochondrion?	0	1
39	1	51	39 2003 GENOME BIOLOGY 4(9):- Greenbaum D; Colangelo C; Williams K; Gerstein M Comparing protein abundance and mRNA expression levels on a genomic scale	0	1
40	3	32	40 2003 GENOME BIOLOGY 4(10):- Granneman S; Baserga SJ Probing the yeast proteome for RNA-processing factors	0	0
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
41	3	18	41 2003 GENOME BIOLOGY 4(12):- Simpson JC; Pepperkok R Localizing the proteome	0	0
42	1	65	42 2003 GENOME RESEARCH 13(9):2052-2058 Conant GC; Wagner A Asymmetric sequence divergence of duplicate genes	0	1
43	1	31	43 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(30):27636-27643 Rutherford JC; Jaron S; Winge DR Aft1p and Aft2p mediate iron-responsive gene expression in yeast through related promoter elements	1	3
44	2	29	44 2003 JOURNAL OF CELL BIOLOGY 161(3):465-469 Aitchison JD; Galitski T Inventories to insights	0	0
45	2	22	45 2003 JOURNAL OF MOLECULAR BIOLOGY 327(5):919-923 Sprinzak E; Sattath S; Margalit H How reliable are experimental protein-protein interaction data?	1	3
46	1	34	46 2003 JOURNAL OF PROTEOME RESEARCH 2(6):598-609 Kuhn K; Thompson A; Prinz T; Muller J; Baumann C; Schmidt G; Neumann T; Hamon C Isolation of N-terminal protein sequence tags from cyanogen bromide cleaved proteins as a novel approach to investigate hydrophobic proteins	0	0
47	1	125	47 2003 MASS SPECTROMETRY REVIEWS 22(1):27-56 Dreger M Subcellular proteomics	0	1
48	1	41	48 2003 MOLECULAR AND CELLULAR BIOLOGY 23(5):1798-1807 Fatica A; Oeffinger M; Dlakic M; Tollervey D Nob1p is required for cleavage of the 3 ' end of 18S rRNA	0	2
49	1	39	49 2003 MOLECULAR AND CELLULAR BIOLOGY 23(13):4449-4460 Saveanu C; Namane A; Gleizes PE; Lebreton A; Rousselle JC; Noaillac-Depeyre J; Gas N; Jacquier A; Fromont-Racine M Sequential protein association with nascent 60S ribosomal particles	1	2
50	1	43	50 2003 MOLECULAR AND CELLULAR BIOLOGY 23(19):6982-6992 Mitchell P; Petfalski E; Houalla R; Podtelejnikov A; Mann M; Tollervey D Rrp47p is an exosome-associated protein required for the 3 ' processing of stable RNAs	0	0
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
51	1	54	51 2003 MOLECULAR BIOLOGY OF THE CELL 14(8):3097-3113 Sandmann T; Herrmann JM; Dengjel J; Schwarz H; Sprang A Suppression of coatomer mutants by a new protein family with COPI and COPII binding motifs in Saccharomyces cerevisiae	0	1
52	1	57	52 2003 MOLECULAR BIOLOGY OF THE CELL 14(8):3266-3279 Yoshihisa T; Yunoki-Esaki K; Ohshima C; Tanaka N; Endo T Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria	0	0
53	6	56	53 2003 MOLECULAR CELL 12(6):1353-1365 Hazbun TR; Malmstrom L; Anderson S; Graczyk BJ; Fox B; Riffle M; Sundin BA; Aranda JD; McDonald WH; Chiu CH; Snydsman BE; Bradley P; Muller EGD; Fields S; Baker D; Yates JR; Davis TN Assigning function to yeast proteins by integration of technologies	0	1
54	1	37	54 2003 MOLECULAR CELL 12(6):1453-1465 Hilleren PJ; Parker R Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates	0	0
55	3	61	55 2003 MOLECULAR CELL 12(6):1565-1576 Krogan NJ; Keogh MC; Datta N; Sawa C; Ryan OW; Ding HM; Haw RA; Pootoolal J; Tong A; Canadien V; Richards DP; Wu XR; Emili A; Hughes TR; Buratowski S; Greenblatt JF A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1	0	1
56	2	75	56 2003 NATURE 422(6928):208-215 Phizicky E; Bastiaens PIH; Zhu H; Snyder M; Fields S Protein analysis on a proteomic scale	2	24
57	1	29	57 2003 NATURE 423(6941):720-724 Kanemaki M; Sanchez-Diaz A; Gambus A; Labib K Functional proteomic identification of DNA replication proteins by induced proteolysis in vivo	1	5
58	3	48	58 2003 NATURE 425(6959):686-691 Huh WK; Falvo JV; Gerke LC; Carroll AS; Howson RW; Weissman JS; O'Shea EK Global analysis of protein localization in budding yeast	5	11
59	4	8	59 2003 NATURE BIOTECHNOLOGY 21(3):239-240 Westermann B; Neupert W 'Omics' of the mitochondrion	2	2
60	2	51	60 2003 NATURE BIOTECHNOLOGY 21(3):281-286 Taylor SW; Fahy E; Zhang B; Glenn GM; Warnock DE; Wiley S; Murphy AN; Gaucher SP; Capaldi RA; Gibson BW; Ghosh SS Characterization of the human heart mitochondrial proteome	6	30
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
61	1	21	61 2003 NATURE BIOTECHNOLOGY 21(3):287-293 Ozawa T; Sako Y; Sato M; Kitamura T; Umezawa Y A genetic approach to identifying mitochondrial proteins	2	4
62	3	8	62 2003 NATURE BIOTECHNOLOGY 21(11):1297-1299 Andrews BJ; Bader GD; Boone C Playing tag with the yeast proteome	0	0
63	2	56	63 2003 NATURE GENETICS 33():305-310 Kanehisa M; Bork P Bioinformatics in the post-sequence era	0	7
64	2	198	64 2003 NATURE GENETICS 33():311-323 Patterson SD; Aebersold RH Proteomics: the first decade and beyond	0	19
65	1	46	65 2003 NATURE GENETICS 33(1):40-48 Lee SS; Lee RYN; Fraser AG; Kamath RS; Ahringer J; Ruvkun G A systematic RNAi screen identifies a critical role for mitochondria in C-elegans longevity	1	26
66	3	49	66 2003 NATURE REVIEWS GENETICS 4(5):391-397 Karlberg EOL; Andersson SGE Mitochondrial gene history and mRNA localization: is there a correlation?	0	0
67	2	40	67 2003 NUCLEIC ACIDS RESEARCH 31(20):6053-6061 Yeger-Lotem E; Margalit H Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation	0	0
68	1	340	68 2003 PHARMACOLOGY & THERAPEUTICS 99(2):183-220 Carroll PM; Dougherty B; Ross-Macdonald P; Browman K; FitzGerald K Model systems in drug discovery: chemical genetics meets genomics	0	0
69	2	107	69 2003 PHYSIOLOGICAL GENOMICS 13(1):15-24 Barr MM Super models	0	2
70	1	47	70 2003 PLANT JOURNAL 36(5):616-628 Moberg P; Stahl A; Bhushan S; Wright SJ; Eriksson A; Bruce BD; Glaser E Characterization of a novel zinc metalloprotease involved in degrading targeting peptides in mitochondria and chloroplasts	0	0
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
71	2	32	71 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1128-1133 Rives AW; Galitski T Modular organization of cellular networks	1	9
72	4	49	72 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(23):13207-13212 Sickmann A; Reinders J; Wagner Y; Joppich C; Zahedi R; Meyer HE; Schonfisch B; Perschil I; Chacinska A; Guiard B; Rehling P; Pfanner N; Meisinger C The proteome of Saccharomyces cerevisiae mitochondria	1	1
73	1	88	73 2003 PROTEINS-STRUCTURE FUNCTION AND GENETICS 53(4):917-930 Nair R; Rost B Better prediction of sub-cellular localization by combining evolutionary and structural information	0	0
74	2	30	74 2003 SCIENCE 302(5644):449-453 Jansen R; Yu HY; Greenbaum D; Kluger Y; Krogan NJ; Chung SB; Emili A; Snyder M; Greenblatt JF; Gerstein M A Bayesian networks approach for predicting protein-protein interactions from genomic data	1	2
75	1	53	75 2003 TRENDS IN BIOTECHNOLOGY 21(2):82-88 Taylor SW; Fahy E; Ghosh SS Global organellar proteomics	4	8
76	1	91	76 2003 TRENDS IN BIOTECHNOLOGY 21(6):275-281 Bradbury A; Velappan N; Verzillo V; Ovecka M; Chasteen L; Sblattero D; Marzari O; Lou JL; Siegel R; Pavlik P Antibodies in proteomics I: generating antibodies	0	1
77	2	64	77 2003 TRENDS IN CELL BIOLOGY 13(2):101-106 Meyer T; Teruel MN Fluorescence imaging of signaling networks	0	7
78	4	138	78 2003 TRENDS IN CELL BIOLOGY 13(7):344-356 Bader GD; Heilbut A; Andrews B; Tyers M; Hughes T; Boone C Functional genomics and proteomics: charting a multidimensional map of the yeast cell	1	2
79	3	27	79 2003 TRENDS IN GENETICS 19(7):356-362 Richly E; Chinnery PF; Leister D Evolutionary diversification of mitochondrial proteomes: implications for human disease	2	2
80	1	64	80 2003 TRENDS IN GENETICS 19(10):551-560 Ge H; Walhout AJM; Vidal M Integrating 'omic' information: a bridge between genomics and systems biology	0	1
#	LCR	NCR	Nodes / Authors / Date	LCS	GCS
81	1	54	81 2003 YEAST 20(7):595-610 Lee SA; Wormsley S; Kamoun S; Lee AFS; Joiner K; Wong B An analysis of the Candida albicans genome database for soluble secreted proteins using computer-based prediction algorithms	0	1
82	1	47	82 2004 BIOINFORMATICS 20(1):21-28 Huang Y; Li Y Prediction of protein subcellular locations using fuzzy k-NN method	0	0
83	1	51	83 2004 DRUG DISCOVERY TODAY 9(2):S47-S52 Turk BE; Cantley LC Peptide libraries: at the crossroads of proteornics and bioinformatics	0	0
84	1	23	84 2004 MOLECULAR GENETICS AND GENOMICS 270(5):442-447 Kochetov AV; Kolchanov NA; Sarai A Interrelations between the efficiency of translation start sites and other sequence features of yeast mRNAs	0	0
85	6	11	85 2004 NATURE GENETICS 36(1):13-14 Thorburn DR Diverse powerhouses	0	0
86	6	102	86 2004 NATURE REVIEWS GENETICS 5(1):11-22 Carpenter AE; Sabatini DM Systematic genome-wide screens of gene function	0	0
87	4	64	87 2004 NUTRITION 20(1):166-172 Liu Y; Sturley SL Nutritional Genomics in yeast models	0	0
88	3	79	88 2004 PLANT CELL 16(1):241-256 Heazlewood JL; Tonti-Filippini JS; Gout AM; Day DA; Whelan J; Millar AH Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins	0	0
89	1	53	89 2004 PLANT JOURNAL 37(2):199-208 Hochholdinger F; Guo L; Schnable PS Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize	0	0

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