Missing Links?: 4   Citation Matrix Graphs Glossary  HistCite Guide  About
Fri Oct 28 14:22:11 2005

The dog genome: Survey sequencing and comparative analysis
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB,
Delcher AL, Pop M, Wang W, Fraser CM, Venter JC
SCIENCE 301 (5641): 1898-1903 SEP 26 2003
and the citing papers

Nodes: 94, Authors: 605, Journals: 55, Outer References: 4640, Words: 465
Collection span: 2003 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11221 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 31-37
Schmutz J; Wheeler J; Grimwood J; Dickson M; Myers RM
Assessing the quality of finished genomic sequence
01
21222 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 125-130
Wang M; Buhler J; Brent MR
The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction
00
31263 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 189-194
Gibbs RA; Weinstock GM
Evolving methods for the assembly of large genomes
11
41184 2003 SCIENCE 301 (5641): 1854-1855
O'Brien SJ; Murphy WJ
A dog's breakfast?
37
50295 2003 SCIENCE 301 (5641): 1898-1903
Kirkness EF; Bafna V; Halpern AL; Levy S; Remington K; et al.
The dog genome: Survey sequencing and comparative analysis
9493
6166 2003 SCIENCE 302 (5647): 997-+
Johnston M; Stormo GD
Heirlooms in the attic
11
721357 2004 ADVANCES IN COMPUTERS, VOL. 60 60: 193-248
Pop M
Shotgun sequence assembly
00
81458 2004 AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY 286 (4): F702-F710
Balkovetz DF; Gerrard ER; Li SX; Johnson D; Lee J; et al.
Gene expression alterations during HGF-induced dedifferentiation of a renal tubular epithelial cell line (MDCK) using a novel canine DNA microarray
03
911989 2004 ANALYTICAL CHEMISTRY 76 (16): 4645-4658
Quigley WWC; Dovichi NJ
Capillary electrophoresis for the analysis of biopolymers
09
101910 2004 ANIMAL GENETICS 35 (3): 249-251
Werner P; Raducha MG; Shin D; Ostrander EA; Kirkness E; et al.
Assignment of 10 canine genes to the canine linkage and comparative maps
22
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1111711 2004 ANIMAL GENETICS 35 (5): 404-407
Klukowska J; Szczerbal I; Wengi-Piasecka A; Switonski M; Schelling C; et al.
Characterization and mapping of canine microsatellites isolated from BAC clones harbouring DNA sequences homologous to seven human genes
00
12219312 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56
Miller W; Makova KD; Nekrutenko A; Hardison RC
Comparative genomics
113
13217313 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
04
1414314 2004 ARTHRITIS RESEARCH & THERAPY 7 (1): R156-R165
Lorenz H; Wenz W; Ivancic M; Steck E; Richter W
Early and stable upregulation of collagen type II, collagen type I and YKL40 expression levels in cartilage during early experimental osteoarthritis occurs independent of joint location and histological grading
00
15211515 2004 BIOESSAYS 26 (8): 833-843
Suzuki M; Hayashizaki Y
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs
06
1615716 2004 BIOINFORMATICS 20 (17): 2893-2902
Chou HH; Hsia AP; Mooney DL; Schnable PS
PICKY: oligo microarray design for large genomes
02
171817 2004 BIOINFORMATICS 20 (18): 3665-3667
Hitte C; Derrien T; Andre C; Ostrander EA; Galibert F
CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome
01
1813818 2004 BIOLOGY OF REPRODUCTION 71 (2): 661-668
Blackmore DG; Baillie LR; Holt JE; Dierkx L; Aitken RJ; et al.
Biosynthesis of the canine zona pellucida requires the integrated participation of both oocytes and granulosa cells
01
1915819 2004 BMC GENOMICS 5: Art. No. 42
Renn SCP; Aubin-Horth N; Hofmann HA
Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray
012
2013620 2004 BMC GENOMICS 5: Art. No. 65
Breen M; Hitte C; Lorentzen TD; Thomas R; Cadieu E; et al.
An integrated 4249 marker FISH/RH map of the canine genome
07
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2122621 2004 BRIEFINGS IN BIOINFORMATICS 5 (3): 237-248
Pop M; Phillippy A; Delcher AL; Salzberg SL
Comparative genome assembly
03
221322 2004 CURRENT BIOLOGY 14 (3): R98-R99
Ostrander EA; Comstock KE
The domestic dog genome
03
2313723 2004 EUROPEAN JOURNAL OF ANAESTHESIOLOGY 21 (7): 505-508
Sweeney BP
Microarrays: new pharmacogenomic tools for the Twenty-first Century
00
24114824 2004 EUROPEAN JOURNAL OF CANCER 40 (6): 858-880
Hansen K; Khanna C
Spontaneous and genetically engineered animal models: use in preclinical cancer drug development
111
2511125 2004 EUROPEAN JOURNAL OF HUMAN GENETICS 12 (11): 875-876
Semple CAM
Deep genomics in shallow times: the finished sequence of human chromosomes 13 and 19
01
2617626 2004 EXPERIMENTAL BIOLOGY AND MEDICINE 229 (9): 866-875
Swanson KS; Mazur MJ; Vashisht K; Rund LA; Beever JE; et al.
Genomics and clinical medicine: Rationale for creating and effectively evaluating animal models
01
2713127 2004 GENE 340 (2): 241-249
Stabej P; Imholz S; Versteeg SA; Zijlstra C; Stokhof AA; et al.
Characterization of the canine desmin (DES), gene and evaluation as a candidate gene for dilated cardiomyopathy in the Dobermann
00
2814728 2004 GENES AND IMMUNITY 5 (8): 615-620
Serrano-Fernandez P; Ibrahim SM; Zettl UK; Thiesen HJ; Godde R; et al.
Intergenomic consensus in multifactorial inheritance loci: the case of multiple sclerosis
03
2913029 2004 GENOME RESEARCH 14 (1): 149-159
Pop M; Kosack DS; Salzberg SL
Hierarchical scaffolding with Bambus
29
3013230 2004 GENOME RESEARCH 14 (4): 507-516
Bourque G; Pevzner PA; Tesler G
Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes
225
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3113931 2004 GENOME RESEARCH 14 (4): 721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; et al.
The atlas genome assembly system
16
3213232 2004 GENOME RESEARCH 14 (5): 852-859
Dermitzakis ET; Kirkness E; Schwarz S; Birney E; Reymond A; et al.
Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
117
3336233 2004 GENOME RESEARCH 14 (10A): 1851-1860
Zhao SY; Shetty J; Hou LH; Delcher A; Zhu BL; et al.
Human, mouse, and rat genome large-scale rearrangements: Stability versus speciation
13
3416834 2004 GENOME RESEARCH 14 (12): 2388-2396
Sutter NB; Eberle MA; Parker HG; Pullar BJ; Kirkness EF; et al.
Extensive and breed-specific linkage disequilibrium in Canis familiaris
13
3513535 2004 GENOMICS 84 (2): 248-264
Housley DJE; Ritzert E; Venta PJ
Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms
00
3611036 2004 HEREDITY 92 (4): 273-274
Wayne RK; Ostrander EA
Out of the dog house: the emergence of the canine genome
00
3713037 2004 HUMAN GENE THERAPY 15 (4): 383-392
Zaboikin M; Srinivasakumar N; Zaboikina T; Schuening F
Cloning and expression of canine O-6-methylguanine-DNA methyltransferase in target cells, using gammaretroviral and lentiviral vectors
00
3815038 2004 JOURNAL OF HEREDITY 95 (3): 185-194
Kukekova AV; Trut LN; Oskina IN; Kharlamova AV; Shikhevich SG; et al.
A marker set for construction of a genetic map of the silver fox (Vulpes vulpes)
11
3912939 2004 JOURNAL OF LEGAL MEDICINE 25 (1): 119-130
Anderson SL
Genetic privacy: A challenge to medico-legal norms
00
4019340 2004 JOURNAL OF PROTEOME RESEARCH 3 (3): 525-537
Malmstrom J; Larsen K; Malmstrom L; Tufvesson E; Parker K; et al.
Proteome annotations and identifications of the human pulmonary fibroblast
06
#LCRNCRNode / Date / Journal / AuthorLCSGCS
4114941 2004 M S-MEDECINE SCIENCES 20 (8-9): 761-766
Galibert F; Andre C; Hitte C
Dog as a mammalian genetic model
11
421842 2004 MAMMALIAN GENOME 15 (6): 503-506
Sargan DR
IDID: Inherited diseases in dogs: Web-based information for canine inherited disease genetics
11
4312943 2004 MAMMALIAN GENOME 15 (7): 544-551
Comstock KE; Lingaas F; Kirkness EF; Hitte C; Thomas R; et al.
A high-resolution comparative map of canine Chromosome 5q14.3-q33 constructed utilizing the 1.5x canine genome sequence
11
4413644 2004 MAMMALIAN GENOME 15 (10): 809-818
Biltueva LS; Yang F; Vorobieva NV; Graphodatsky AS
Comparative map between the domestic pig and dog
01
4517045 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (12): 2210-2231
Premzl M; Gready JE; Jermiin LS; Simonic T; Graves JAM
Evolution of vertebrate genes related to prion and Shadoo proteins - Clues from comparative genomic analysis
02
4615146 2004 MOLECULAR BRAIN RESEARCH 126 (2): 198-206
Saetre P; Lindberg J; Leonard JA; Olsson K; Pettersson U; et al.
From wild wolf to domestic dog: gene expression changes in the brain
02
4713447 2004 MOLECULAR THERAPY 10 (4): 741-748
Eliopoulos N; Lejeune L; Martineau D; Galipeau J
Human-compatible collagen matrix for prolonged and reversible systemic delivery of erythropoietin in mice from gene-modified marrow stromal cells
01
48322648 2004 NATURE 428 (6982): 493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; et al.
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
13237
49110049 2004 NATURE REVIEWS GENETICS 5 (3): 202-212
Andersson L; Georges M
Domestic-animal genomics: deciphering the genetics of complex traits
021
5018050 2004 NATURE REVIEWS GENETICS 5 (4): 316-323
Mattick JS
RNA regulation: a new genetics?
038
#LCRNCRNode / Date / Journal / AuthorLCSGCS
51310151 2004 NATURE REVIEWS GENETICS 5 (12): 900-910
Sutter NB; Ostrander EA
Dog star rising: The canine genetic system
15
5223452 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
013
5315053 2004 NUCLEIC ACIDS RESEARCH 32 (20): 6038-6046
Glockner G; Lehmann R; Romualdi A; Pradella S; Schulte-Spechtel U; et al.
Comparative analysis of the Borrelia garinii genome
07
5413154 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (7): 1916-1921
Istrail S; Sutton GG; Florea L; Halpern AL; Mobarry CM; et al.
Whole-genome shotgun assembly and comparison of human genome assemblies
115
5518055 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (8): 2386-2391
Raudsepp T; Lee EJ; Kata SR; Brinkmeyer C; Mickelson JR; et al.
Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping
06
5613656 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (52): 18058-18063
Fondon JW; Garner HR
Molecular origins of rapid and continuous morphological evolution
010
5718357 2004 VETERINARY CLINICAL PATHOLOGY 33 (4): 196-207
Avery PR; Avery AC
Molecular methods to distinguish reactive and neoplastic lymphocyte expansions and their importance in transitional neoplastic states
01
5814458 2005 AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM 288 (2): E454-E461
Kabir M; Catalano KJ; Ananthnarayan S; Kim SP; Van Citters GW; et al.
Molecular evidence supporting the portal theory: a causative link between visceral adiposity and hepatic insulin resistance
01
5933359 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
6014660 2005 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 327 (2): 541-547
Katz ML; Khan S; Awano T; Shahid SA; Siakotos AN; et al.
A mutation in the CLN8 gene in English Setter dogs with neuronal ceroid-lipofuscinosis
13
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6112461 2005 BIOCHEMICAL GENETICS 43 (3-4): 127-141
McGlothlin JR; Gao L; Lavoie T; Simon BA; Easley RB; et al.
Molecular cloning and characterization of canine pre-B-cell colony-enhancing factor
00
6228562 2005 BIOESSAYS 27 (8): 775-784
Han JS; Boeke JD
LINEA retrotransposons: modulators of quantity and quality of mammalian gene expression?
00
6312363 2005 BIOLOGICAL CHEMISTRY 386 (4): 325-332
Cruciani W; Mikalsen SO
The connexin gene family in mammals
00
64224764 2005 BIOLOGICAL REVIEWS 80 (2): 227-250
Shapiro JA; von Sternberg R
Why repetitive DNA is essential to genome function
00
6512565 2005 BRITISH JOURNAL OF PHARMACOLOGY 145 (3): 374-384
Morton MF; Pyati J; Dai H; Li LN; Moreno V; et al.
Molecular cloning, expression and pharmacological characterization of the canine cholecystokinin 1 receptor
00
66112666 2005 CARCINOGENESIS 26 (3): 513-523
Khanna C; Hunter K
Modeling metastasis in vivo
06
6719067 2005 CYTOGENETIC AND GENOME RESEARCH 108 (1-3): 6-15
Ryder OA
Conservation genomics: applying whole genome studies to species conservation efforts
01
6818868 2005 CYTOGENETIC AND GENOME RESEARCH 108 (1-3): 122-138
Froenicke L
Origins of primate chromosomes - as delineated by Zoo-FISH and alignments of human and mouse draft genome sequences
01
69230269 2005 CYTOGENETIC AND GENOME RESEARCH 110 (1-4): 8-24
Brosius J
Echoes from the past - are we still in an RNP world?
02
7017870 2005 CYTOGENETIC AND GENOME RESEARCH 110 (1-4): 307-317
Brandt J; Veith AM; Volff JN
A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
7135071 2005 GENOME RESEARCH 15 (1): 54-66
Florea L; Di Francesco V; Miller J; Turner R; Yao A; et al.
Gene and alternative splicing annotation with AIR
02
7224972 2005 GENOME RESEARCH 15 (9): 1243-1249
van de Lagemaat LN; Gagnier L; Medstrand P; Mager DL
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
00
7323673 2005 GENOME RESEARCH 15 (9): 1307-1314
Woods IG; Wilson C; Friedlander B; Chang P; Reyes DK; et al.
The zebrafish gene map defines ancestral vertebrate chromosomes
00
7415274 2005 GENOMICS 85 (1): 48-59
Debenham SL; Hart EA; Ashurst JL; Howe KL; Quail MA; et al.
Genomic sequence of the class II region of the canine MHC: comparison with the MHC of other mammalian species
01
7524975 2005 GENOMICS 86 (3): 287-294
Melville SA; Wilson CL; Chiang CS; Studdert VP; Lingaas F; et al.
A mutation in canine CLN5 causes neuronal ceroid lipofuscinosis in Border collie dogs
00
7624476 2005 HORMONE AND METABOLIC RESEARCH 37 (8): 474-481
Wood IS; German AJ; Hunter L; Trayhurn P
Adipokine gene expression in dog adipose tissues and dog white adipocytes differentiated in primary culture
00
7713477 2005 HUMAN GENE THERAPY 16 (8): 937-946
Dow S; Elmslie R; Kurzman I; MacEwen G; Pericle F; et al.
Phase I study of liposome-DNA complexes encoding the interleukin-2 gene in dogs with osteosarcoma lung metastases
00
7825778 2005 HUMAN GENETICS 116 (5): 368-377
Werner P; Raducha MG; Prociuk U; Ostrander EA; Spielman RS; et al.
The keeshond defect in cardiac conotruncal development is oligogenic
00
7915379 2005 HUMAN MOLECULAR GENETICS 14 (11): 1417-1427
Pele M; Tiret L; Kessler JL; Blot S; Panthier JJ
SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dogs
12
8025480 2005 HUMAN MOLECULAR GENETICS 14 (13): 1905-1906
Pele M; Tiret L; Kessler JL; Blot S; Panthier JJ
SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dog (vol 14, pg 1417, 2005)
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8112981 2005 IMMUNOGENETICS 57 (3-4): 267-272
Berggren KT; Seddon JM
MHC promoter polymorphism in grey wolves and domestic dogs
00
8228982 2005 JOURNAL OF HEREDITY 96 (5): 475-484
Aguirre-Hernandez J; Sargan DR
Evaluation of candidate genes in the absence of positional information: A poor bet on a blind dog!
00
8325283 2005 MAMMALIAN GENOME 16 (6): 442-459
Chantry-Darmon U; Urien C; Hayes H; Bertaud M; Chadi-Taourit S; et al.
Construction of a cytogenetically anchored microsatellite map in rabbit
00
8423684 2005 MAMMALIAN GENOME 16 (7): 524-531
Casal ML; Scheidt JL; Rhodes JL; Henthorn PS; Werner P
Mutation identification in a canine model of X-linked ectodermal dysplasia
00
8514385 2005 MEDYCYNA WETERYNARYJNA 61 (3): 257-261
Szczerbal I
Cytogenetic studies of dog cancer
00
8618686 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (2): 347-359
Bardeleben C; Moore RL; Wayne RK
Isolation and molecular evolution of the selenocysteine tRNA (Cf TRSP) and RNase p RNA (Cf RPPH1) genes in the dog family, Canidae
00
8715087 2005 MOLECULAR ECOLOGY 14 (2): 503-511
Seddon JM; Parker HG; Ostrander EA; Ellegren H
SNPs in ecological and conservation studies: a test in the Scandinavian wolf population
01
8835588 2005 NATURE REVIEWS GENETICS 6 (2): 151-157
Dermitzakis ET; Reymond A; Antonarakis SE
Conserved non-genic sequences - an unexpected feature of mammalian genomes
07
8983489 2005 NATURE REVIEWS GENETICS 6 (8): 643-649
Hitte C; Madeoy J; Kirkness EF; Priat C; Lorentzen TD; et al.
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping
00
90217590 2005 PALEOBIOLOGY 31 (2): 1-16
Brosius J
Disparity, adaptation, exaptation, bookkeeping, and contingency at the genome level
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9122491 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (13): 4795-4800
Margulies EH; Vinson JP; Miller W; Jaffe DB; Lindblad-Toh K; et al.
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing
12
92126892 2005 VETERINARY CLINICAL PATHOLOGY 34 (3): 189-212
McManus PM
Classification of myeloid neoplasms: a comparative review
00
9317893 2005 VETERINARY JOURNAL 169 (2): 188-196
Rak SG; Distl O
Congenital sensorineural deafness in dogs: A molecular genetic approach toward unravelling the responsible genes
00
9423394 2005 VETERINARY PATHOLOGY 42 (5): 550-558
Thomson SAM; Kennerly E; Olby N; Mickelson JR; Hoffmann DE; et al.
Microarray analysis of differentially expressed genes of primary tumors in the canine central nervous system
00

Generated by: HistCite 2005.08.29