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Wed Mar 15 14:12:31 2006

Proof and evolutionary analysis of ancient genome
duplication in the yeast Saccharomyces cerevisiae

KELLIS M, BIRREN BW, LANDER ES
NATURE 428: 617-624 2004
and the citing papers

Nodes: 134, Authors: 705, Journals: 59, Outer References: 5204, Words: 591
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by year, source, volume, issue, page.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
101231101 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368
Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al.
CYGD: the comprehensive Yeast Genome Database
010
102288102 2005 NUCLEIC ACIDS RESEARCH 33 (9): 2838-2851
Zhang ZH; Dietrich FS
Mapping of transcription start sites in Saccharomyces cerevisiae using 5 ' SAGE
22
103281103 2005 NUCLEIC ACIDS RESEARCH 33 (14): 4626-4638
Makarova KS; Wolf YI; Mekhedov SL; Mirkin BG; Koonin EV
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
01
104234104 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6164-6171
Notebaart RA; Huynen MA; Teusink B; Siezen RJ; Snel B
Correlation between sequence conservation and the genomic context after gene duplication
01
105130105 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6319-6326
Schacherer J; de Montigny J; Welcker A; Souciet JL; Potier S
Duplication processes in Saccharomyces cerevisiae haploid strains
00
106240106 2005 PLANT CELL 17 (1): 4-11
Veitia RA
Paralogs in polyploids: One for all and all for one?
05
107156107 2005 PLANT CELL 17 (4): 1033-1045
Chantret N; Salse J; Sabot F; Rahman S; Bellec A; et al.
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and aegilops)
03
108157108 2005 PLANT MOLECULAR BIOLOGY 57 (6): 907-924
Morimoto R; Kosugi T; Nakamura C; Takumi S
Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat
00
109166109 2005 PLANT MOLECULAR BIOLOGY 58 (2): 229-245
Gachon CMM; Langlois-Meurinne M; Henry Y; Saindrenan P
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
02
110359110 2005 PLANT MOLECULAR BIOLOGY 59 (1): 63-74
Wang HB; Yu LJ; Lai F; Liu LS; Wang JF
Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
111251111 2005 PLOS BIOLOGY 3 (10): 1700-1708
Dehal P; Boore JL
Two rounds of whole genome duplication in the ancestral vertebrate
00
112284112 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102: 6630-6635
Medina M
Genomes, phylogeny, and evolutionary systems biology
01
113132113 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (3): 707-712
Gu X; Zhang ZQ; Huang W
Rapid evolution of expression and regulatory divergences after yeast gene duplication
38
114150114 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (40): 14338-14343
Drummond DA; Bloom JD; Adami C; Wilke CO; Arnold FH
Why highly expressed proteins evolve slowly
01
115133115 2005 PROTEOMICS 5 (1): 67-75
Matis M; Zakelj-Mavric M; Peter-Katalinic J
Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus
02
116244116 2005 RNA-A PUBLICATION OF THE RNA SOCIETY 11 (7): 1064-1072
Kachouri R; Stribinskis S; Zhu YG; Ramos KS; Westhof E; et al.
A surprisingly large RNase P RNA in Candida glabrata
00
117113117 2005 SCIENCE 307 (5713): 1321-1324
Loftus BJ; Fung E; Roncaglia P; Rowley D; Amedeo P; et al.
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
431
118214118 2005 SCIENCE 309 (5736): 938-940
Ihmels J; Bergmann S; Gerami-Nejad M; Yanai I; McClellan M; et al.
Rewiring of the yeast transcriptional network through the evolution of motif usage
04
119138119 2005 SCIENCE 309 (5743): 2010-2013
Raser JM; O'Shea EK
Noise in gene expression: Origins, consequences, and control
03
120220120 2005 TRENDS IN GENETICS 21 (1): 1-3
Ochman H; Daubin V; Lerat E
A bunch of fun-guys: the whole-genome view of yeast evolution
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
121150121 2005 TRENDS IN GENETICS 21 (1): 60-65
Lockton S; Gaut BS
Plant conserved non-coding sequences and paralogue evolution
06
122133122 2005 TRENDS IN GENETICS 21 (10): 548-551
Davis JC; Petrov DA
Do disparate mechanisms of duplication add similar genes to the genome?
00
123382123 2005 TRENDS IN GENETICS 21 (10): 559-567
Panopoulou G; Poustka AJ
Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis
00
124535124 2005 TRENDS IN GENETICS 21 (11): 602-607
Li WH; Yang J; Gu X
Expression divergence between duplicate genes
00
1253133125 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
00
126126126 2005 VIRUS GENES 31 (1): 65-72
Arav-Boger R; Zong JC; Foster CB
Loss of linkage disequilibrium and accelerated protein divergence in duplicated cytomegalovirus chemokine genes
01
1271117127 2006 BIOTECHNOLOGY ADVANCES 24 (2): 210-223
Rubio-Texeira M
Endless versatility in the biotechnological applications of Kluyveromyces LAC genes
00
128143128 2006 JOURNAL OF CELL BIOLOGY 172 (3): 347-362
Gladfelter AS; Hungerbuehler AK; Philippsen P
Asynchronous nuclear division cycles in multinucleated cells
00
129120129 2006 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 146 (1): 24-29
Clark CG; Ali IKM; Zaki M; Loftus BJ; Hall N
Unique organisation of tRNA genes in Entamoeba histolytica
00
130341130 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (1): 144-151
He XL; Zhang JZ
Higher duplicability of less important genes in yeast genomes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
131433131 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (2): 245-253
Fares MA; Byrne KP; Wolfe KH
Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species
00
132153132 2006 NATURE STRUCTURAL & MOLECULAR BIOLOGY 13 (2): 168-176
Aviv T; Lin Z; Ben-Ari G; Smibert CA; Sicheri F
Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p
00
133353133 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (8): 2730-2735
Chapman BA; Bowers JE; Feltus FA; Paterson AH
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
00
134146134 2006 TRENDS IN GENETICS 22 (1): 56-63
Ooi SL; Pan XW; Peyser BD; Ye P; Meluh PB; et al.
Global synthetic-lethality analysis and yeast functional profiling
00

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