Outer References Missing Links? Journal list All-Author list Citation Matrix
Fri Aug 23 14:49:29 2002
Articles citing "Functional discovery via a compendium of expression profiles"
Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai HY, He YDD, Kidd MJ,
King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K, Simon J, Bard M, Friend SH
CELL 102 (1): 109-126 JUL 7 2000
HistCite Guide
Nodes: 214
Sorted by year, journal, volume, page.
Cited nodesNodes / AuthorsGCSLCS
11 2000 BIOFUTUR 2000(206):26-27
Goffeau A
Yeast, 4 years later
00
12 2000 CELL 102(1):9-15
Young RA
Biomedical discovery with DNA arrays
9625
03 2000 CELL 102(1):109-126
Hughes TR; Marton MJ; Jones AR; Roberts CJ; Stoughton R; Armour CD; Bennett HA; Coffey E; Dai HY; He YDD; Kidd MJ; King AM; Meyer MR; Slade D; Lum PY; Stepaniants SB; Shoemaker DD; Gachotte D; Chakraburtty K; Simon J; Bard M; Friend SH
Functional discovery via a compendium of expression profiles
212212
14 2000 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 65():383-393
Begley TJ; Jelinsky SA; Samson LD
Complex transcriptional responses to macromolecular damaging agents: Regulatory responses specific for S(N)2 alkylation and the MAG1 gene
00
15 2000 CURRENT OPINION IN BIOTECHNOLOGY 11(6):602-609
Cockett M; Dracopoli N; Sigal E
Applied genomics: integration of the technology within pharmaceutical research and development
30
16 2000 CURRENT OPINION IN GENETICS & DEVELOPMENT 10(6):617-623
Johnston M
The yeast genome: on the road to the Golden Age
21
27 2000 CURRENT OPINION IN MOLECULAR THERAPEUTICS 2(6):682-690
Ricci MS; El-Deiry WS
Novel strategies for therapeutic design in molecular oncology using gene expression profiles
31
18 2000 FOOD TECHNOLOGY AND BIOTECHNOLOGY 38(4):237-252
Feldmann H
Gene function and expression: Four years of the post-genomic era of yeast
00
19 2000 JOURNAL OF CELL SCIENCE 113(23):4151-4156
Schulze A; Downward J
Commentary - Analysis of gene expression by microarrays: cell biologist's gold mine or minefield?
40
110 2000 NATURE 408(6811):495-498
Vogelauer M; Wu JS; Suka N; Grunstein M
Global histone acetylation and deacetylation in yeast
683
111 2000 NATURE 408(6815):894-896
Aldhous P
Genomics - Beyond the book of life
20
112 2000 NATURE BIOTECHNOLOGY 18(11):1142-1143
Glassbrook N; Beecher C; Ryals J
Metabolic profiling on the right path
31
213 2000 NATURE GENETICS 26(1):4-5
Gullans SR
Of microarrays and meandering data points
10
114 2000 NATURE REVIEWS GENETICS 1(2):116-125
Stockwell BR
Chemical genetics: Ligand-based discovery of gene function
112
115 2000 NATURE REVIEWS GENETICS 1(2):149-153
Olden K; Wilson S
Environmental health and genomics: visions and implications
91
116 2000 PLANT PHYSIOLOGY 124(4):1451-1454
Ausubel FM
Arabidopsis genome. A milestone in plant biology
20
117 2000 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 97(22):12369-12374
Cavalieri D; Townsend JP; Hartl DL
Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis
85
118 2000 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 97(25):13708-13713
Bernstein BE; Tong JK; Schreiber SL
Genomewide studies of histone deacetylase function in yeast
4510
219 2000 SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY 11(6):485-493
Kuno N; Furuya M
Phytochrome regulation of nuclear gene expression in plants
30
220 2000 TOXICOLOGICAL SCIENCES 58(2):217-219
Corton JC; Stauber AJ
Toward construction of a transcript profile database predictive of chemical toxicity
10
121 2000 TRENDS IN MICROBIOLOGY 8(9):394-395
Land KM
After expression profiling: the pathway to functional discovery
00
122 2001 AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY 185(3):716-724
Muhle RA; Pavlidis P; Grundy WN; Hirsch E
A high-throughput study of gene expression in preterm labor with a subtractive microarray approach
10
223 2001 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 25(4):405-408
Alam R; Gorska M
Genomic microarrays - Arraying order in biological chaos?
00
124 2001 ANALYTICAL CELLULAR PATHOLOGY 22(4):229-234
Heiskanen M; Kononen J; Barlund M; Torhorst J; Sauter G; Kallioniemi A; Kallioniemi O
CGH, cDNA and tissue microarray analyses implicate FGFR2 amplification in a small subset of breast tumors
10
225 2001 ANNUAL REPORTS IN MEDICINAL CHEMISTRY, VOL 36 36():201-210
Pollock S; Safer HM
Chapter 20. Bioinformatics in the drug discovery process
00
126 2001 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 45(12):3674-3674
Kontoyiannis DP; May GS
Identification of azole-responsive genes by microarray technology: Why are we missing the efflux transporter genes?
00
527 2001 BIOCHEMICAL PHARMACOLOGY 62(10):1311-1336
Clarke PA; Poele RT; Wooster R; Workman P
Gene expression microarray analysis in cancer biology, pharmacology, and drug development: progress and potential
40
128 2001 BIOINFORMATICS 17(6):564-565
Bushel PR; Hamadeh H; Bennett L; Sieber S; Martin K; Nuwaysir EF; Johnson K; Reynolds K; Paules RS; Afshari CA
MAPS: a microarray project system for gene expression experiment information and data validation
70
229 2001 BIOINFORMATICS 17(11):1019-1026
Kielbasa SM; Korbel JO; Beule D; Schuchhardt J; Herzel H
Combining frequency and positional information to predict transcription factor binding sites
10
130 2001 BIOINFORMATICS 17(12):1183-1197
Wagner A
How to reconstruct a large genetic network from n gene perturbations in fewer than n(2) easy steps
21
131 2001 BIOTECHNIQUES 31(5):1182-+
Evertsz EM; Au-Young J; Ruvolo MV; Lim AC; Reynolds MA
Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays
20
132 2001 BJU INTERNATIONAL 88(5):451-457
Williamson M; Naaby-Hansen S; Masters JRW
21st Century molecular biology in urology
10
233 2001 BRAIN RESEARCH 909(1-2):194-203
Konu O; Kane JK; Barrett T; Vawter MP; Chang RY; Ma JZ; Donovan DM; Sharp B; Becker KG; Li MD
Region-specific transcriptional response to chronic nicotine in rat brain
40
134 2001 BREAST CANCER RESEARCH 3(3):158-175
Cooper CS
Applications of microarray technology in breast cancer research
61
235 2001 BULLETIN DU CANCER 88(3):253-260
Vandenbunder B
From DNA arrays to transcriptional regulatory networks
00
236 2001 CANCER JOURNAL 7(1):2-15
Triche TJ; Schofield D; Buckley J
DNA microarrays in pediatric cancer
30
137 2001 CELL 104(3):333-339
Vidal M
A biological atlas of functional maps
275
138 2001 CELL 107(6):739-750
Colman-Lerner A; Chin TE; Brent R
Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates
30
139 2001 CHAOS 11(1):98-107
Herzel H; Beule D; Kielbasa S; Korbel J; Sers C; Malik A; Eickhoff H; Lehrach H; Schuchhardt J
Extracting information from cDNA arrays
43
240 2001 COMPARATIVE AND FUNCTIONAL GENOMICS 2(2):69-79
Hauser NC; Fellenberg K; Gil R; Bastuck S; Hoheisel JD; Perez-Ortin JE
Whole genome analysis of a wine yeast strain
10
141 2001 COMPARATIVE AND FUNCTIONAL GENOMICS 2(4):236-242
Kelly DE; Lamb DC; Kelly SL
Genome-wide generation of yeast gene deletion strains
10
342 2001 CURRENT GENETICS 40(3):157-171
Bill RM
Yeast - a panacea for the structure-function analysis of membrane proteins?
20
143 2001 CURRENT OPINION IN BIOTECHNOLOGY 12(1):28-34
Vidan S; Snyder M
Large-scale mutagenesis: yeast genetics in the genome era
51
244 2001 CURRENT OPINION IN BIOTECHNOLOGY 12(1):41-47
Blohm DH; Guiseppi-Elie A
New developments in microarray technology
203
245 2001 CURRENT OPINION IN BIOTECHNOLOGY 12(1):48-52
van Berkum NL; Holstege FCP
DNA microarrays: raising the profile
90
146 2001 CURRENT OPINION IN BIOTECHNOLOGY 12(1):82-86
Fiehn O; Kloska S; Altmann T
Integrated studies on plant biology using multiparallel techniques
82
147 2001 CURRENT OPINION IN BIOTECHNOLOGY 12(1):87-91
Delneri D; Brancia FL; Oliver SG
Towards a truly integrative biology through the functional genomics of yeast
70
248 2001 CURRENT OPINION IN CHEMICAL BIOLOGY 5(1):21-25
Hughes TR; Shoemaker DD
DNA microarrays for expression profiling
100
149 2001 CURRENT OPINION IN CHEMICAL BIOLOGY 5(1):46-50
Pellegrini M
Computational methods for protein function analysis
10
150 2001 CURRENT OPINION IN CHEMICAL BIOLOGY 5(1):57-62
Boulton SJ; Vincent S; Vidal M
Use of protein-interaction maps to formulate biological questions
30
251 2001 CURRENT OPINION IN GENETICS & DEVELOPMENT 11(3):258-263
Meltzer PS
Spotting the target: microarrays for disease gene discovery
30
152 2001 CURRENT OPINION IN MICROBIOLOGY 4(4):363-364
Osbourn AE
Molecular intimacy exposed: probing plant-fungus interactions - Editorial overview
00
153 2001 CURRENT OPINION IN MICROBIOLOGY 4(4):387-392
Sweigard JA; Ebbole DJ
Functional analysis of pathogenicity genes in a genomics world
10
354 2001 CURRENT OPINION IN NEUROBIOLOGY 11(5):615-620
Cao YX; Dulac C
Profiling brain transcription: neurons learn a lesson from yeast
00
155 2001 CURRENT OPINION IN PLANT BIOLOGY 4(2):136-142
Breyne P; Zabeau M
Genome-wide expression analysis of plant cell cycle modulated genes
53
156 2001 CURRENT OPINION IN PLANT BIOLOGY 4(3):186-190
Glassbrook N; Ryals J
A systematic approach to biochemical profiling
11
157 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(3):340-347
Altman RB; Raychaudhuri S
Whole-genome expression analysis: challenges beyond clustering
91
158 2001 DISEASE MARKERS 17(2):99-109
Ross DT; Perou CM
A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines
00
259 2001 DRUG DISCOVERY TODAY 6(3):141-149
Matthews DJ; Kopczynski J
Using model-system genetics for drug-based target discovery
20
160 2001 DRUG DISCOVERY TODAY 6(6):316-323
Sanseau P
Impact of human genome sequencing for in silico target discovery
50
161 2001 EMBO REPORTS 2(6):493-498
Devauz F; Marc P; Bouchoux C; Delaveau T; Hikkel I; Potier MC; Jacq C
An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor
80
162 2001 ENVIRONMENTAL HEALTH PERSPECTIVES 109(1):A8-A11
Iannaccone PM
Toxicogenomics: "The call of the wild chip"
20
163 2001 ENVIRONMENTAL HEALTH PERSPECTIVES 109(1):A34-A37
Medlin J
Array of hope for gene technology
20
164 2001 ENVIRONMENTAL HEALTH PERSPECTIVES 109(9):881-891
Lobenhofer EK; Bushel PR; Afshari CA; Hamadeh HK
Progress in the application of DNA microarrays
30
165 2001 EUROPEAN NEUROPSYCHOPHARMACOLOGY 11(6):399-411
Vilo J; Kivinen K
Regulatory sequence analysis: application to the interpretation of gene expression
00
266 2001 FEBS LETTERS 498(2-3):140-144
Devaux F; Marc P; Jacq C
Transcriptomes, transcription activators and microarrays
60
167 2001 GENE 272(1-2):61-74
Xu WY; Bak S; Decker A; Paquette SM; Feyereisen R; Galbraith DW
Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana
40
168 2001 GENES & DEVELOPMENT 15(5):619-626
Kent NA; Karabetsou N; Politis PK; Mellor J
In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p
83
169 2001 GENETIC DISORDERS OF ENDOCRINE NEOPLASIA 28():20-49
Aguiar RCT; Dahia PLM
Identification and characterization of disease-related genes: Focus on endocrine neoplasias
00
170 2001 GENETICS 159(4):1449-1465
Scholes DT; Banerjee M; Bowen B; Curcio MJ
Multiple regulators of Tyl transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance
00
171 2001 GENOME RESEARCH 11(2):266-273
Simons A; Dafni N; Dotan I; Oron Y; Canaani D
Establishment of a chemical synthetic lethality screen in cultured human cells
20
172 2001 GENOME RESEARCH 11(7):1149-1155
Planet PJ; DeSalle R; Siddall M; Bael T; Sarkar IN; Stanley SE
Systematic analysis of DNA microarray data: Ordering and interpreting patterns of gene expression
41
273 2001 GENOME RESEARCH 11(7):1256-1261
Zarrinkar PP; Mainquist JK; Zamora M; Stern D; Welsh JB; Sapinoso LM; Hampton GM; Lockhart DJ
Arrays of arrays for high-throughput gene expression profiling
42
174 2001 GENOME RESEARCH 11(9):1567-1573
Birnbaum K; Benfey PN; Shasha DE
cis element/transcription factor analysis (cis/TF): A method for discovering transcription factor/cis element relationships
20
275 2001 HEMATOLOGY-ONCOLOGY CLINICS OF NORTH AMERICA 15(5):911-+
Raetz EA; Moos PJ; Szabo A; Carroll WL
Gene expression profiling - Methods and clinical applications in oncology
00
176 2001 INTERNAL MEDICINE JOURNAL 31(5):296-303
Boussioutas A; Taupin D
Towards a molecular approach to gastric cancer management
00
177 2001 INTERNATIONAL REVIEW OF NEUROBIOLOGY, VOL 48 48():219-253
Thibault C; Wang L; Zhang L; Miles MF
DNA arrays and functional genomics in neurobiology
00
178 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(6):4020-4027
Traven A; Wong JMS; Xu DM; Sopta M; Ingles CJ
Interorganellar communication - Altered nuclear gene expression profiles in a yeast mitochondrial DNA mutant
80
179 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(19):15861-15867
Saveanu C; Fromont-Racine M; Harington A; Ricard F; Namane A; Jacquier A
Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues
71
180 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(36):34131-34141
Araki T; Nagarajan R; Milbrandt J
Identification of genes induced in peripheral nerve after injury - Expression profiling and novel gene discovery
20
181 2001 JOURNAL OF CELL BIOLOGY 153(5):1085-1095
Preuss M; Leonhard K; Hell K; Stuart RA; Neupert W; Herrmann JM
Mba1, a novel component of the mitochondrial protein export machinery of the yeast Saccharomyces cerevisiae
70
282 2001 JOURNAL OF CELL SCIENCE 114(14):2561-2568
Langst G; Becker PB
Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors
101
183 2001 JOURNAL OF COMPUTATIONAL BIOLOGY 8(6):625-637
Wolfinger RD; Gibson G; Wolfinger ED; Bennett L; Hamadeh H; Bushel P; Afshari C; Paules RS
Assessing gene significance from cDNA microarray expression data via mixed models
61
184 2001 JOURNAL OF COMPUTATIONAL BIOLOGY 8(6):639-659
Baggerly KA; Coombes KR; Hess KR; Stivers DN; Abruzzo LV; Zhang W
Identifying differentially expressed genes in cDNA microarray experiments
20
185 2001 JOURNAL OF EXPERIMENTAL MEDICINE 194(8):1123-1139
Ehrt S; Schnappinger D; Bekiranov S; Drenkow J; Shi SP; Gingeras TR; Gaasterland T; Schoolnik G; Nathan C
Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: Signaling roles of nitric oxide synthase-2 and phagocyte oxidase
60
186 2001 JOURNAL OF FOOD SCIENCE 66(6):772-780
van der Werf MJ; Schuren FHJ; Bijlsma S; Tas AC; van Ommen B
Nutrigenomics: Application of genomics technologies in nutritional sciences and food technology
10
287 2001 JOURNAL OF GENETICS 80(1):17-21
Veitia RA; Hurst LD
Accelerated molecular evolution of insect orthologues of ERG28/C14orf1: a link with ecdysteroid metabolism?
00
188 2001 JOURNAL OF LIPID RESEARCH 42(1):150-154
Gachotte D; Eckstein J; Barbuch R; Hughes T; Roberts C; Bard M
A novel gene conserved from yeast to humans is involved in sterol biosynthesis
63
189 2001 JOURNAL OF MOLECULAR BIOLOGY 314(5):1053-1066
Qian J; Dolled-Filhart M; Lin J; Yu HY; Gerstein M
Beyond synexpression relationships: Local clustering of time- shifted and inverted gene expression profiles identifies new, biologically relevant interactions
21
190 2001 JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY 12(5):1072-1078
Kurella M; Hsiao LL; Yoshida T; Randall JD; Chow G; Sarang SS; Jensen RV; Gullans SR
DNA microarray analysis of complex biologic processes
101
191 2001 LANCET ONCOLOGY 2(11):674-682
Bertucci F; Houlgatte R; Nguyen C; Viens P; Jordan BR; Birnbaum D
Gene expression profiling of cancer by use of DNA arrays: how far from the clinic?
10
292 2001 MICROBIOLOGY-SGM 147():1403-1414
Lucchini S; Thompson A; Hinton JCD
Microarrays for microbiologists
51
293 2001 MINERVA BIOTECNOLOGICA 13(4):249-254
De Filippo C; Cavalieri D
Yeast in the post-genomic era - Use of DNA microarrays to study stress response, response to drugs and alkylating agents in Saccharomyces cerevisiae
00
094 2001 MOLECULAR AND CELLULAR BIOLOGY 21(6):2057-2069
Washburn BK; Esposito RE
Identification of the Sin3-binding site in Ume6 defines a two- step process for conversion of Ume6 from a transcriptional repressor to an activator in yeast
20
295 2001 MOLECULAR AND CELLULAR BIOLOGY 21(13):4347-4368
Natarajan K; Meyer MR; Jackson BM; Slade D; Roberts C; Hinnebusch AG; Marton MJ
Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast
92
396 2001 MOLECULAR AND CELLULAR BIOLOGY 21(19):6450-6460
Fazzio TG; Kooperberg C; Goldmark JP; Neal C; Basom R; Delrow J; Tsukiyama T
Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
62
197 2001 MOLECULAR AND CELLULAR BIOLOGY 21(19):6515-6528
Baetz K; Moffat J; Haynes J; Chang M; Andrews B
Transcriptional coregulation by the cell integrity mitogen- activated protein kinase Slt2 and the cell cycle regulator Swi4
11
198 2001 MOLECULAR BIOLOGY OF THE CELL 12(2):297-308
Epstein CB; Waddle JA; Hale W; Dave V; Thornton J; Macatee TL; Garner HR; Butow RA
Genome-wide responses to mitochondrial dysfunction
130
199 2001 MOLECULAR BIOLOGY REPORTS 28(3):139-156
Harris SE; Harris MA
Gene expression profiling in osteoblast biology: bioinformatic tools
00
1100 2001 NATURE 409(6822):922-+
Shoemaker DD; Schadt EE; Armour CD; He YD; Garrett-Engele P; McDonagh PD; Loerch PM; Leonardson A; Lum PY; Cavet G; Wu LF; Altschuler SJ; Edwards S; King J; Tsang JS; Schimmack G; Schelter JM; Koch J; Ziman M; Marton MJ; Li B; Cundiff P; Ward T; Castle J; Krolewski M; Meyer MR; Mao M; Burchard J; Kidd MJ; Dai H; Phillips JW; Linsley PS; Stoughton R; Scherer S; Boguski MS
Experimental annotation of the human genome using microarray technology
6010
2101 2001 NATURE BIOTECHNOLOGY 19(4):342-347
Hughes TR; Mao M; Jones AR; Burchard J; Marton MJ; Shannon KW; Lefkowitz SM; Ziman M; Schelter JM; Meyer MR; Kobayashi S; Davis C; Dai HY; He YDD; Stephaniants SB; Cavet G; Walker WL; West A; Coffey E; Shoemaker DD; Stoughton R; Blanchard AP; Friend SH; Linsley PS
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
418
1102 2001 NATURE CELL BIOLOGY 3(8):E175-E178
Mills JC; Roth KA; Cagan RL; Gordon JI
DNA microarrays and beyond: completing the journey from tissue to cell
50
2103 2001 NATURE CELL BIOLOGY 3(8):E190-E195
Schulze A; Downward J
Navigating gene expression using microarrays - a technology review
192
1104 2001 NATURE GENETICS 29(4):373-373
Perou CM
Show me the data!
00
1105 2001 NATURE GENETICS 29(4):389-395
Jin W; Riley RM; Wolfinger RD; White KP; Passador-Gurgel G; Gibson G
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
51
2106 2001 NATURE MEDICINE 7(6):658-659
He YDD; Friend SH
Microarrays - the 21st century divining rod?
51
1107 2001 NATURE REVIEWS GENETICS 2(4):302-312
Kumar A; Snyder M
Emerging technologies in yeast genomics
133
3108 2001 NATURE REVIEWS GENETICS 2(5):360-369
Petes TD
Meiotic recombination hot spots and cold spots
130
1109 2001 NATURE REVIEWS GENETICS 2(9):681-689
Kim SK
HTTP ://C-elegans: Mining the functional genomic landscape
00
1110 2001 NATURE REVIEWS NEUROSCIENCE 2(6):441-443
Miles MF
Microarrays: lost in a storm of data?
62
1111 2001 NEUROBIOLOGY OF DISEASE 8(2):183-193
Luo Z; Geschwind DH
Microarray applications in neuroscience
131
2112 2001 NEUROLOGY 57(5):755-761
Greenberg SA
DNA microarray gene expression analysis technology and its application to neurological disorders
30
1113 2001 NEURON 30(2):355-368
Nagarajan R; Svaren J; Le N; Araki T; Watson M; Milbrandt J
EGR2 mutations in inherited neuropathies dominant-negatively inhibit myelin gene expression
120
2114 2001 NUCLEIC ACIDS RESEARCH 29(15):art. no.-e72
Mills JC; Gordon JI
A new approach for filtering noise from high-density oligonucleotide microarray datasets
80
1115 2001 PHARMACOLOGY & THERAPEUTICS 92(2-3):123-134
Rahman S; Miles MF
Identification of novel ethanol-sensitive genes by expression profiling
00
1116 2001 PHYSIOLOGICAL GENOMICS 6(3):169-181
Loguinov AV; Anderson LM; Crosby GJ; Yukhananov RY
Gene expression following acute morphine administration
00
1117 2001 PLANT CELL 13(1):113-123
Schaffer R; Landgraf J; Accerbi M; Simon V; Larson M; Wisman E
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis
413
1118 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(13):7552-7557
Reid SD; Green NM; Buss JK; Lei B; Musser JM
Multilocus analysis of extracellular putative virulence proteins made by group A Streptococcus: Population genetics, human serologic response, and gene transcription
60
1119 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(18):10416-10421
Smoot LM; Smoot JC; Graham MR; Somerville GA; Sturdevant DE; Migliaccio CAL; Sylva GL; Musser JM
Global differential gene expression in response to growth temperature alteration in group A Streptococcus
73
1120 2001 SCIENCE 293(5537):2087-2092
Kim SK; Lund J; Kiraly M; Duke K; Jiang M; Stuart JM; Eizinger A; Wylie BN; Davidson GS
A gene expression map for Caenorhabditis elegans
173
2121 2001 SCIENTIST 15(18):24-+
Smutzer G
Yeast: An attractive, yet simple model
00
1122 2001 SCIENTIST 15(16):28-28
Perkel JM
Mining for microarray gold
00
1123 2001 TOXICOLOGICAL SCIENCES 60(1):6-10
Fielden MR; Zacharewski TR
Challenges and limitations of gene expression profiling in mechanistic and predictive toxicology
71
2124 2001 TOXICOLOGY AND APPLIED PHARMACOLOGY 175(1):28-42
Waring JF; Jolly RA; Ciurlionis R; Lum PY; Praestgaard JT; Morfitt DC; Buratto B; Roberts C; Schadt E; Ulrich RG
Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles
81
1125 2001 TOXICOLOGY LETTERS 120(1-3):359-368
Waring JF; Ciurlionis R; Jolly RA; Heindel M; Ulrich RG
Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity
70
1126 2001 TRENDS IN BIOTECHNOLOGY 19(10):412-415
Noordewier MO; Warren PV
Gene expression microarrays and the integration of biological knowledge
40
2127 2001 TRENDS IN BIOTECHNOLOGY 19(11):463-468
Hess KR; Zhang W; Baggerly KA; Stivers DN; Coombes KR
Microarrays: handling the deluge of data and extracting reliable information
52
1128 2001 TRENDS IN IMMUNOLOGY 22(1):35-40
Staudt LM
Gene expression physiology and pathophysiology of the immune system
80
2129 2001 TRENDS IN MOLECULAR MEDICINE 7(11):492-493
Harris T
Genetics, genomics and beyond
00
2130 2001 TRENDS IN NEUROSCIENCES 24(5):259-266
Husi H; Grant SGN
Proteomics of the nervous system
100
1131 2002 ARTHRITIS AND RHEUMATISM 46(4):874-884
Grant EP; Pickard MD; Briskin MJ; Gutierrez-Ramos JC
Gene expression profiles - Creating new perspectives in arthritis research
10
1132 2002 BIOCONJUGATE CHEMISTRY 13(1):97-103
Lee PH; Sawan SP; Modrusan Z; Arnold LJ; Reynolds MA
An efficient binding chemistry for glass polynucleotide microarrays
00
1133 2002 BIOESSAYS 24(3):267-274
Featherstone DE; Broadie K
Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network
00
2134 2002 BIOINFORMATICS 18(3):405-412
Kuo WP; Jenssen TK; Butte AJ; Ohno-Machado L; Kohane IS
Analysis of matched mRNA measurements from two different microarray technologies
00
2135 2002 BIOTECHNIQUES 32(6):1310-1314
Weil MR; Macatee T; Garner HR
Toward a universal standard: Comparing two methods for standardizing spotted microarray data
00
1136 2002 BIOTECHNIQUES 33(1):108-+
Hornberg JJ; de Haas RR; Dekker H; Lankelma J
Analysis of multiple gene expression array experiments after repetitive hybridizations on nylon membranes
00
1137 2002 BRITISH JOURNAL OF CANCER 86(8):1283-1289
Dangles V; Lazar V; Validire P; Richon S; Wertheimer M; Laville V; Janneau JL; Barrois M; Bovin C; Poynard T; Vallancien G; Bellet D
Gene expression profiles of bladder cancers: evidence for a striking effect of in vitro cell models on gene patterns
00
3138 2002 CELL 109(4):437-446
Robyr D; Suka Y; Xenarios I; Kurdistani SK; Wang A; Suka N; Grunstein M
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
31
1139 2002 CELL 109(6):745-756
van Leeuwen F; Gafken PR; Gottschling DE
Dot1p modulates silencing in yeast by methylation of the nucleosome core
40
1140 2002 CLINICAL CHEMISTRY 48(8):1178-1185
Bernard PS; Wittwer CT
Real-time PCR technology for cancer diagnostics
00
2141 2002 CRITICAL REVIEWS IN TOXICOLOGY 32(2):67-112
Fielden MR; Matthews JB; Fertuck KC; Halgren RG; Zacharewski TR
In silico approaches to mechanistic and predictive toxicology: An introduction to bioinformatics for toxicologists
00
2142 2002 CURRENT OPINION IN BIOTECHNOLOGY 13(2):156-160
Weckwerth W; Fiehn O
Can we discover novel pathways using metabolomic analysis?
00
1143 2002 CURRENT OPINION IN BIOTECHNOLOGY 13(3):208-212
Stenger DA; Andreadis JD; Vora GJ; Pancrazio JJ
Potential applications of DNA microarrays in biodefense-related diagnostics
00
3144 2002 CURRENT OPINION IN CHEMICAL BIOLOGY 6(1):106-111
Foury F; Kucej M
Yeast mitochondrial biogenesis: a model system for humans?
00
2145 2002 CURRENT OPINION IN GENETICS & DEVELOPMENT 12(2):130-136
Wyrick JJ; Young RA
Deciphering gene expression regulatory networks
30
4146 2002 CURRENT OPINION IN LIPIDOLOGY 13(2):173-179
Callow MJ; Rubin EM
Expression profiling and comparative sequence derived insights into lipid metabolism
00
1147 2002 CURRENT PHARMACEUTICAL DESIGN 8(13):1155-1172
Haselbeck R; Wall D; Jiang B; Ketela T; Zyskind J; Bussey H; Foulkes JG; Roemer T
Comprehensive essential gene identification as a platform for novel anti-infective drug discovery
00
3148 2002 DEVELOPMENT 129(7):1543-1552
Van Driessche N; Shaw C; Katoh M; Morio T; Sucgang R; Ibarra M; Kuwayama H; Saito T; Urushihara H; Maeda M; Takeuchi I; Ochiai H; Eaton W; Tollett J; Halter J; Kuspa A; Tanaka Y; Shaulsky G
A transcriptional profile of multicellular development in Dictyostelium discoideum
20
1149 2002 DNA AND CELL BIOLOGY 21(5-6):483-490
Natarajan K; Shepard LA; Chodosh J
The use of DNA array technology in studies of ocular viral pathogenesis
00
3150 2002 DRUG DISCOVERY TODAY 7(3):197-205
Zheng XFS; Chan TF
Chemical genomics in the global study of protein functions
10

Cited nodesNodes / AuthorsGCSLCS
2151 2002 DRUG DISCOVERY TODAY 7(13):711-718
Zanders ED; Bailey DS; Dean PM
Probes for chemical genomics by design
10
3152 2002 DRUG NEWS & PERSPECTIVES 15(3):155-165
De Backer MD; Thurmond RL; Carmen AA; Luyten WHML
Gene-expression-based responses to drug treatment
00
1153 2002 EUROPEAN JOURNAL OF BIOCHEMISTRY 269(6):1697-1707
Lagorce A; Le Berre-Anton V; Aguilar-Uscanga B; Martin-Yken H; Dagkessamanskaia A; Francois J
Involvement of GFA1, which encodes glutamine-fructose-6- phosphate amidotransferase, in the activation of the chitin synthesis pathway in response to cell-wall defects in Saccharomyces cerevisiae
00
2154 2002 EXPERIMENTAL NEPHROLOGY 10(2):64-74
Fryer RM; Randall J; Yoshida T; Hsiao LL; Blumenstock J; Jensen KE; Dimofte T; Jensen RV; Gullans SR
Global analysis of gene expression: Methods, interpretation, and pitfalls
00
3155 2002 EXPERT OPINION ON BIOLOGICAL THERAPY 2(5):545-556
Costouros NG; Libutti SK
Microarray technology and gene expression analysis for the study of angiogenesis
00
1156 2002 GENOME RESEARCH 12(1):37-46
Jansen R; Greenbaum D; Gerstein M
Relating whole-genome expression data with protein-protein interactions
32
2157 2002 GENOME RESEARCH 12(2):309-315
Wagner A
Estimating coarse gene network structure from large-scale gene perturbation data
00
4158 2002 GENOME RESEARCH 12(6):976-984
Dorris DR; Ramakrishnan R; Trakas D; Dudzik F; Belval R; Zhao C; Nguyen A; Domanus M; Mazumder A
A highly reproducible, linear, and automated sample preparation method for DNA microarrays
00
1159 2002 GENOME RESEARCH 12(7):1112-1120
Misra J; Schmitt W; Hwang D; Hsiao LL; Gullans S; Stephanopoulos G; Stephanopoulos G
Interactive exploration of microarray gene expression patterns in a reduced dimensional space
00
2160 2002 GENOME RESEARCH 12(7):1121-1126
Grosu P; Townsend JP; Hartl DL; Cavalieri D
Pathway processor: A tool for integrating whole-genome expression results into metabolic networks
00
1161 2002 GENOMICS 79(1):104-113
Novak JP; Sladek R; Hudson TJ
Characterization of variability in large-scale gene expression data: Implications for study design
20
2162 2002 GUIDE TO YEAST GENETICS AND MOLECULAR AND CELL BIOLOGY, PT B 350():393-414
Gasch AP
Yeast genomic expression studies using DNA microarrays
00
2163 2002 INFECTION AND IMMUNITY 70(2):762-770
Chaussee MS; Sylva GL; Sturdevant DE; Smoot LM; Graham MR; Watson RO; Musser JM
Rgg influences the expression of multiple regulatory loci to coregulate virulence factor expression in Streptococcus pyogenes
00
2164 2002 INFLAMMATORY BOWEL DISEASES 8(2):140-157
Warner EE; Dieckgraefe BK
Application of genome-wide gene expression profiling by high- density DNA Arrays to the treatment and study of inflammatory bowel disease
00
4165 2002 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 43(8):2554-2560
Yoshida S; Yashar BM; Hiriyanna S; Swaroop A
Microarray analysis of gene expression in the aging human retina
00
2166 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(16):14011-14019
Naiki T; Nagaki M; Shidoji Y; Kojima H; Imose M; Kato T; Ohishi N; Yagi K; Moriwaki H
Analysis of gene expression profile induced by hepatocyte nuclear factor 4 alpha in hepatoma cells using an oligonucleotide microarray
00
1167 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(27):24475-24483
Foury F; Roganti T
Deletion of the mitochondrial carrier genes MRS3 and MRS4 suppresses mitochondrial iron accumulation in a yeast frataxin- deficient strain
00
2168 2002 JOURNAL OF CELL BIOLOGY 158(2):259-271
Smith JJ; Marelli M; Christmas RH; Vizeacoumar FJ; Dilworth DJ; Ideker T; Galitski T; Dimitrov K; Rachubinski RA; Aitchison JD
Transcriptome profiling to identify genes involved in peroxisome assembly and function
00
1169 2002 JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS 11(1):108-136
Yang YH; Buckley MJ; Dudoit S; Speed TP
Comparison of methods for image analysis on cDNA microarray data
10
1170 2002 JOURNAL OF COMPUTATIONAL BIOLOGY 9(1):67-103
De Jong H
Modeling and simulation of genetic regulatory systems: A literature review
10
2171 2002 JOURNAL OF COMPUTATIONAL BIOLOGY 9(2):193-210
Bilu Y; Linial M
The advantage of functional prediction based on clustering of yeast genes and its correlation with non-sequence based classifications
00
4172 2002 JOURNAL OF DENTAL RESEARCH 81(2):89-97
Todd R; Wong DTW
DNA hybridization arrays for gene expression analysis of human oral cancer
00
2173 2002 JOURNAL OF MOLECULAR BIOLOGY 317(2):225-235
Zhang L; Wang L; Ravindranathan A; Miles MF
A new algorithm for analysis of oligonucleotide arrays: Application to expression profiling in mouse brain regions
00
1174 2002 JOURNAL OF MOLECULAR BIOLOGY 318(1):71-81
Zhu Z; Pilpel Y; Church GM
Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm
00
1175 2002 JOURNAL OF MOLECULAR BIOLOGY 319(5):1257-1265
Jensen LJ; Gupta R; Blom N; Devos D; Tamames J; Kesmir C; Nielsen H; Staerfeldt HH; Rapacki K; Workman C; Andersen CAF; Knudsen S; Krogh A; Valencia A; Brunak S
Prediction of human protein function from post-translational modifications and localization features
00
2176 2002 M S-MEDECINE SCIENCES 18(1):97-99
Kurz CL; Pujol N
C-elegans: huge mountains of data
00
2177 2002 MATHEMATICAL BIOSCIENCES 176(1):71-98
Szabo A; Boucher K; Carroll WL; Klebanov LB; Tsodikov AD; Yakovlev AY
Variable selection and pattern recognition with gene expression data generated by the microarray technology
10
1178 2002 MATHEMATICAL BIOSCIENCES 176(1):99-121
Pollard KS; van der Laan MJ
Statistical inference for simultaneous clustering of gene expression data
00
2179 2002 METHODS 26(3):281-290
Hayes A; Zhang NS; Wu J; Butler PR; Hauser NC; Hoheisel JD; Lim FL; Sharrocks AD; Oliver SG
Hybridization array technology coupled with chemostat culture: Tools to interrogate gene expression in Saccharomyces cerevisiae
00
4180 2002 MICROCIRCULATION 9(1):13-22
Li XM; Gu WK; Mohan S; Baylink DJ
DNA microarrays: Their use and misuse
00
2181 2002 MOLECULAR AND CELLULAR BIOLOGY 22(14):5076-5088
Huang DQ; Moffat J; Andrews B
Dissection of a complex phenotype by functional genomics reveals roles for the yeast cyclin-dependent protein kinase Pho85 in stress adaptation and cell integrity
00
1182 2002 MOLECULAR BIOLOGY OF THE CELL 13(5):1608-1614
Cohen BA; Pilpel Y; Mitra RD; Church GM
Discrimination between paralogs using microarray analysis: Application to the Yap1p and Yap2p transcriptional networks
00
1183 2002 MOLECULAR CELL 9(4):713-723
Fauchon M; Lagniel G; Aude JC; Lombardia L; Soularue P; Petat C; Marguerie G; Sentenac A; Werner M; Labarre J
Sulfur sparing in the yeast proteome in response to sulfur demand
10
3184 2002 MOLECULAR CELL 9(5):1133-1143
Kemmeren P; van Berkum NL; Vilo J; Bijma T; Donders R; Brazma A; Holstege FCP
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
00
2185 2002 MOLECULAR CELLULAR MICROBIOLOGY 31():55-91
Hautefort I; Hinton JCD
Molecular methods for monitoring bacterial gene expression during infection
00
3186 2002 NATURE 417(6887):399-403
von Mering C; Krause R; Snel B; Cornell M; Oliver SG; Fields S; Bork P
Comparative assessment of large-scale data sets of protein- protein interactions
10
4187 2002 NATURE GENETICS 31(3):248-254
Kurdistani SK; Robyr D; Tavazoie S; Grunstein M
Genome-wide binding map of the histone deacetylase Rpd3 in yeast
00
2188 2002 NATURE GENETICS 31(3):255-265
Wu LF; Hughes TR; Davierwala AP; Robinson MD; Stoughton R; Altschuler SJ
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
00
1189 2002 NATURE GENETICS 31(4):400-404
Steinmetz LM; Scharfe C; Deutschbauer AM; Mokranjac D; Herman ZS; Jones T; Chu AM; Giaever G; Prokisch H; Oefner PJ; Davis RW
Systematic screen for human disease genes in yeast
00
4190 2002 NATURE REVIEWS MOLECULAR CELL BIOLOGY 3(6):422-429
Tsukiyama T
The in vivo functions of ATP-dependent chromatin-remodelling factors
00
7191 2002 NATURWISSENSCHAFTEN 89(6):235-249
Holtorf H; Guitton MC; Reski R
Plant functional genomics
00
2192 2002 NUCLEIC ACIDS RESEARCH 30(4):art. no.-e15
Yang YH; Dudoit S; Luu P; Lin DM; Peng V; Ngai J; Speed TP
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
40
2193 2002 NUCLEIC ACIDS RESEARCH 30(1):76-79
Le Crom S; Devaux F; Jacq C; Marc P
yMGV: helping biologists with yeast microarray data mining
00
1194 2002 NUCLEIC ACIDS RESEARCH 30(13):2920-2929
Shedden K; Cooper S
Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods
00
1195 2002 PHARMACOGENETICS 12(1):55-65
Kita Y; Shiozawa N; Jin WH; Majewski RR; Besharse JC; Greene AS; Jacob HJ
Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies
20
1196 2002 PHARMACOGENOMICS 3(3):281-285
Jung V
Fast forwarding pharmacogenomics
00
7197 2002 PLANT MOLECULAR BIOLOGY 48(1-2):75-97
Donson J; Fang YW; Espiritu-Santo G; Xing WM; Salazar A; Miyamoto S; Armendarez V; Volkmuth W
Comprehensive gene expression analysis by transcript profiling
10
4198 2002 PLANT MOLECULAR BIOLOGY 48(1-2):99-118
Aharoni A; Vorst O
DNA microarrays for functional plant genomics
00
2199 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(3):1562-1567
Revel AT; Talaat AM; Norgard MV
DNA microarray analysis of differential gene expression in Borrelial burgdorferi, the Lyme disease spirochete
20
1200 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(13):8778-8783
Birrell GW; Brown JA; Wu HI; Giaever G; Chu AM; Davis RW; Brown JM
Transcriptional response of Saccharomyces cerevisiae to DNA- damaging agents does not identify the genes that protect against these agents
00
1201 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(14):9284-9289
Cowen LE; Nantel A; Whiteway MS; Thomas DY; Tessier DC; Kohn LM; Anderson JB
Population genomics of drug resistance in Candida albicans
00
2202 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(15):9739-9744
Mo C; Valachovic M; Randall SK; Nickels JT; Bard M
Protein-protein interactions among C-4 demethylation enzymes involved in yeast sterol biosynthesis
00
1203 2002 PROTEIN FOLDING IN THE CELL 59():345-390
Travers KJ; Patil CK; Weissman JS
Functional genomic approaches to understanding molecular chaperones and stress responses
00
1204 2002 PROTIST 153(2):93-98
Shaulsky G; Loomis WF
Gene expression patterns in Dictyostelium using microarrays
00
3205 2002 SCIENCE 295(5553):284-+
Gerstein M; Lan N; Jansen R
Proteomics - Integrating interactomes
31
4206 2002 SCIENCE 296(5568):752-755
Brem RB; Yvert G; Clinton R; Kruglyak L
Genetic dissection of transcriptional regulation in budding yeast
00
1207 2002 SCIENTIST 16(1):52-52
Miller K
Downsizing DNA assays
00
3208 2002 TOXICOLOGIC PATHOLOGY 30(1):15-27
Boorman GA; Anderson SP; Casey WM; Brown RH; Crosby LM; Gottschalk K; Easton M; Ni H; Morgan KT
Toxicogenomics, drug discovery, and the pathologist
00
1209 2002 TOXICOLOGIC PATHOLOGY 30(1):88-92
Boorman GA; Haseman JK; Waters MD; Hardisty JF; Sills RC
Quality review procedures necessary for rodent pathology Databases and toxicogenomic studies: The National Toxicology Program experience
00
1210 2002 TRENDS IN BIOCHEMICAL SCIENCES 27(6):295-300
Kodadek T
Development of protein-detecting microarrays and related devices
00
4211 2002 TRENDS IN GENETICS 18(5):265-271
Nadon R; Shoemaker J
Statistical issues with microarrays: processing and analysis
00
2212 2002 VISION RESEARCH 42(4):463-470
Farjo R; Yu JD; Othman MI; Yoshida S; Sheth S; Glaser T; Baehr W; Swaroop A
Mouse eye gene microarrays for investigating ocular development and disease
31
1213 2002 YEAST 19(1):43-54
Rodriguez-Navarro S; Igual JC; Perez-Ortin JE
SRC1: An intron-containing yeast gene involved in sister chromatid segregation
00
2214 2002 YEAST 19(5):403-422
Briza P; Bogengruber E; Thur A; Rutzler M; Munsterkotter M; Dawes IW; Breitenbach M
Systematic analysis of sporulation phenotypes in 624 non-lethal homozygous deletion strains of Saccharomyces cerevisiae
10

Generated by: Historiographer prototype. Version: 2002.08.21