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Tue Feb 1 09:30:45 2005
The I kappa B-NF-kappa B signaling module:
Temporal control and selective gene activation

Hoffmann A, Levchenko A, Scott ML, Baltimore D
SCIENCE 298 (5596): 1241-1245 2002
and the citing papers

Nodes: 104, Authors: 431, Journals: 63, Outer References: 5144, Words: 500
Collection span: 2002 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
1171 2002 SCIENCE 298(5596):1189-1190
Ting AY; Endy D
Decoding NF-kappa B signaling
58
20192 2002 SCIENCE 298(5596):1241-1245
Hoffmann A; Levchenko A; Scott ML; Baltimore D
The I kappa B-NF-kappa B signaling module: Temporal control and selective gene activation
103103
31233 2003 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 47(12):3704-3707
Choi JH; Song MJ; Kim SH; Choi SM; Lee DG; et al.
Effect of moxiloxacin on production of proinflammatory cytokines from human peripheral blood mononuclear cells
01
41384 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(2):211-214
Lee ZH; Kim HH
Signal transduction by receptor activator of nuclear factor kappa B in osteoclasts
012
51925 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 311(4):1117-1132
Feske S; Okamura H; Hogan PG; Rao A
Ca2+/calcineurin signalling in cells of the immune system
05
61256 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31:925-929
Lewis RS
Calcium oscillations in T-cells: mechanisms and consequences for gene expression
12
71237 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31:1503-1509
Cho KH; Wolkenhauer O
Analysis and modelling of signal transduction pathways in systems biology
01
811138 2003 BIOESSAYS 25(8):767-780
Liou HC; Hsia CY
Distinctions between c-Rel and other NF-kappa B proteins in immunity and disease
03
91819 2003 BIOTECHNOLOGY AND BIOENGINEERING 84(7):763-772
Covert MW; Famili I; Palsson BO
Identifying constraints that govern cell behavior: A key to converting conceptual to computational models in biology?
25
1027410 2003 BIOTECHNOLOGY AND BIOENGINEERING 84(7):773-782
Levchenko A
Dynamical and integrative cell signaling: Challenges for the new biology
02
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
1114111 2003 BLOOD 102(6):2259-2267
Choi M; Rolle S; Wellner M; Cardoso MC; Scheidereit C; et al.
Inhibition of NF-kappa B by a TAT-NEMO-binding domain peptide accelerates constitutive apoptosis and abrogates LPS-delayed neutrophil apoptosis
09
1228212 2003 CANCER RESEARCH 63(24):8837-8847
Dadke D; Fryer BH; Golemis EA; Field J
Activation of p21-activated kinase 1-nuclear factor kappa B signaling by Kaposi's sarcoma-associated herpes virus G protein-coupled receptor during cellular transformation
03
1317613 2003 CHRONOBIOLOGY INTERNATIONAL 20(4):559-575
Merrow M; Dragovic Z; Tan Y; Meyer G; Sveric K; et al.
Combining theoretical and experimental approaches to understand the circadian clock
00
14110614 2003 CURRENT BIOLOGY 13(5):R198-R207
Roenneberg T; Merrow M
The network of time: Understanding the molecular circadian system
017
1511815 2003 CURRENT BIOLOGY 13(16):R632-R634
Pourquie O; Goldbeter A
Segmentation clock: Insights from computational models
01
1622316 2003 CURRENT BIOLOGY 13(16):1409-1413
Monk NAM
Oscillatory expression of Hes1, p53, and NF-kappa B driven by transcriptional time delays
410
1716317 2003 CURRENT OPINION IN CELL BIOLOGY 15(2):221-231
Tyson JJ; Chen KC; Novak B
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
937
1819918 2003 EMBO JOURNAL 22(11):2552-2560
Santoro MG; Rossi A; Amici C
New embo member's review - NF-kappa B and virus infection: who controls whom
118
1915219 2003 EMBO JOURNAL 22(20):5530-5539
Hoffmann A; Leung TH; Baltimore D
Genetic analysis of NF-kappa B/Rel transcription factors defines functional specificities
212
20278220 2003 ENDOCRINE REVIEWS 24(4):488-522
De Bosscher K; Vanden Berghe W; Haegeman G
The interplay between the glucocorticoid receptor and nuclear factor-kappa B or activator protein-1: Molecular mechanisms for gene repression
118
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
2115721 2003 ENDOCRINOLOGY 144(9):3828-3835
Etgen AM; Acosta-Martinez M
Participation of growth factor signal transduction pathways in estradiol facilitation of female reproductive behavior
02
221722 2003 FEBS LETTERS 541(1-3):176-177
Jensen MH; Sneppen K; Tiana G
Sustained oscillations and time delays in gene expression of protein Hes1
00
2311323 2003 GENOME RESEARCH 13(11):2413-2422
Cho KH; Shin SY; Lee HW; Wolkenhauer O
Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway
23
2413724 2003 HEPATOLOGY 38(6):1540-1551
Cavin LG; Romieu-Mourez R; Panta GR; Sun JY; Factor VM; et al.
Inhibition of CK2 activity by TGF-beta 1 promotes I kappa B-alpha protein stabilization and apoptosis of immortalized hepatocytes
02
2514525 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(10):8286-8293
Komarova SV; Pilkington MF; Weidema AF; Dixon SJ; Sims SM
RANK ligand-induced elevation of cytosolic Ca2+ accelerates nuclear translocation of nuclear factor kappa B in osteoclasts
011
2625526 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(25):23094-23100
Malek S; Huang DB; Huxford T; Ghosh S; Ghosh G
X-ray crystal structure of an I kappa B beta center dot NF-kappa B p65 homodimer complex
39
2724327 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(25):23101-23106
Chen Y; Wu J; Ghosh G
kappa B-Ras binds to the unique insert within the ankyrin repeat domain of I kappa B beta and regulates cytoplasmic retention of I kappa B beta center dot NF-kappa B complexes
16
2814928 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30881-30888
Yang L; Ross K; Qwarnstrom EE
RelA control of I kappa B alpha phosphorylation - A positive feedback loop for high affinity NF-kappa B complexes
12
2912429 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(47):46541-46548
Viatour P; Legrand-Poels S; van Lint C; Warnier M; Merville MP; et al.
Cytoplasmic I kappa B alpha increases NF-kappa B-independent transcription through binding to histone deacetylase (HDAC) 1 and HDAC3
111
3014130 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(48):47997-48003
Saucerman JJ; Brunton LL; Michailova AP; McCulloch AD
Modeling beta-adrenergic control of cardiac myocyte contractility in silico
310
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
3113131 2003 JOURNAL OF BIOMEDICAL SCIENCE 10(5):468-474
Wong PMC; Chung SW
A functional connection between RanGTP,NF-kappa B and septic shock
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3213832 2003 JOURNAL OF CELL BIOLOGY 161(3):497-505
Jacquet M; Renault G; Lallet S; De Mey J; Goldbeter A
Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae
05
3315733 2003 JOURNAL OF CELLULAR PHYSIOLOGY 197(3):357-369
Seguin CA; Bernier SM
TNF alpha suppresses link protein and type II collagen expression in chondrocytes: Role of MEK1/2 and NF-kappa B signaling pathways
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Dolganiuc A; Kodys K; Kopasz A; Marshall C; Do T; et al.
Hepatitis C virus core and nonstructural protein 3 proteins induce pro-and anti-inflammatory cytokines and inhibit dendritic cell differentiation
017
3524435 2003 MOLECULAR CELL 12(5):1287-1300
Schmidt C; Peng BL; Li ZK; Sclabas GM; Fujioka S; et al.
Mechanisms of proinflammatory cytokine-induced biphasic NF-kappa B activation
213
3612336 2003 NATURE IMMUNOLOGY 4(10):933-936
Chakraborty AK; Dustin ML; Shaw AS
In silico models for cellular and molecular immunology: successes, promises and challenges
03
3719037 2003 NEURAL NETWORKS 16(9):1389-1398
Kikuchi S; Fujimoto K; Kitagawa N; Fuchikawa T; Abe M; et al.
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3812538 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(24):14235-14240
Idel S; Dansky HM; Breslow JL
A20, a regulator of NF kappa B, maps to an atherosclerosis locus and differs between parental sensitive C57BL/6J and resistant FVB/N strains
03
3933539 2003 SIMULATION-TRANSACTIONS OF THE SOCIETY FOR MODELING AND SIMULATION INTERNATIONAL 79(12):726-739
Cho KH; Shin SY; Kolch W; Wolkenhauer O
Experimental design in systems biology, based on parameter sensitivity analysis using a Monte Carlo method: A case study for the TNF alpha-mediated NF-kappa B signal transduction pathway
00
4014440 2003 THROMBOSIS AND HAEMOSTASIS 90(3):528-537
Kolev K; Skopal J; Simon L; Csonka E; Machovich R; et al.
Matrix metalloproteinase-9 expression in post-hypoxic human brain capillary endothelial cells: H2O2 as a trigger and NF-kappa B as a signal transducer
05
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4112741 2004 ARTHRITIS AND RHEUMATISM 50(11):3541-3548
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Role of NF-kappa B transcription factors in antiinflammatory and proinflammatory actions of mechanical signals
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4231542 2004 BIOCHEMICAL SOCIETY TRANSACTIONS 32:1090-1092
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Oscillations in transcription factor dynamics: a new way to control gene expression
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