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Mon Jul 31 15:56:18 2006

Hillier LW, Miller W, Birney E, et al.
Sequence and comparative analysis of the chicken genome
provide unique perspectives on vertebrate evolution
NATURE 432 (7018): 695-716 DEC 9 2004
and the citing papers
Nodes: 203, Authors: 1483, Journals: 94, Outer References: 8307, Words: 911
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Collection span: 2004 - 2006
View: Overview   Sorted by journal name.

Page 1 of 3: [  1  2  3 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
111594 2005 ADVANCES IN PARASITOLOGY, VOL 60 60: 285-330
Shirley MW; Smith AL; Tomley FM
The biology of avian Eimeria with an emphasis on their control by vaccination
01
211455 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
32106 2005 ANIMAL BIOTECHNOLOGY 16 (2): 81-102
Reed KM; Knutson TP; Krueth SB; Sullivan LR; Chaves LD
In silco mapping of ESTs from the Turkey (Meleagris gallopavo)
00
4211121 2006 ANIMAL BIOTECHNOLOGY 17 (1): 73-80
Reed KM; Hall MK; Chaves LD; Knutson TP
Single nucleotide polymorphisms for integrative mapping in the Turkey (Meleagris gallopavo)
00
51177 2005 ANIMAL GENETICS 36 (3): 216-222
Aerts JA; Veenendaal T; van der Poel JJ; Crooijmans RPMA; Groenen MAM
Chromosomal assignment of chicken clone contigs by extending the consensus linkage map
01
61328 2005 ANIMAL GENETICS 36 (5): 396-400
Miwa M; Inoue-Murayama M; Kayang BB; Minvielle F; Monvoisin JL; et al.
Mapping of plumage colour and blood protein loci on the microsatellite linkage map of the Japanese quail
13
71399 2005 ANIMAL GENETICS 36 (5): 401-407
Beaumont C; Roussot O; Feve K; Vignoles F; Leroux S; et al.
A genome scan with AFLP((TM)) markers to detect fearfulness-related QTLs in Japanese quail
00
81410 2005 ANIMAL GENETICS 36 (5): 438-443
Reed KM
In silico comparative mapping of 278 genomic survey sequences from the turkey (Meleagris gallopavo)
00
914211 2005 ANIMAL GENETICS 36 (6): 468-476
Rabie TSKM; Crooijmans RPMA; Bovenhuis H; Vereijken ALJ; Veenendaal T; et al.
Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome
00
1025122 2006 ANIMAL GENETICS 37 (1): 84-84
Reed KM; Mendoza KM
Assignment of turkey linkage group M22 to the comparative turkey/chicken map
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11124123 2006 ANIMAL GENETICS 37 (2): 95-100
Nones K; Ledur MC; Ruy DC; Baron EE; Melo CMR; et al.
Mapping QTLs on chicken chromosome 1 for performance and carcass traits in a broiler x layer cross
00
12217124 2006 ANIMAL GENETICS 37 (2): 130-138
Chaves LD; Knutson TP; Krueth SB; Reed KM
Using the chicken genome sequence in the development and mapping of genetic markers in the turkey (Meleagris gallopavo)
00
13110212 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 143-164
Stone EA; Cooper GM; Sidow A
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
13
14211713 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 381-406
Giallourakis C; Henson C; Reich M; Xie XH; Mootha VK
Disease gene discovery through integrative genomics
01
1517714 2005 ANNUAL REVIEW OF MICROBIOLOGY 59: 191-209
Snel B; Huynen MA; Dutilh BE
Genome trees and the nature of genome evolution
06
1618615 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 749-756
Moore RJ; Doran TJ; Wise TG; Riddell S; Granger K; et al.
Chicken functional genomics: an overview
00
1713316 2005 AVIAN PATHOLOGY 34 (4): 324-331
Zhang HM; Bacon LD; Cheng HH; Hunt HD
Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and subgroup E avian leukosis viruses in White Leghorns
00
1812317 2005 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 1734 (2): 136-142
Matsuyama H; Sato K; Nakamura Y; Suzuki K; Akiba Y
Modulation of regulatory factors involved in cholesterol metabolism in response to feeding of pravastatin-or cholesterol-supplemented diet in chickens
00
1911618 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
20138125 2006 BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 70 (6): 1438-1446
Morshed M; Sano S; Nishimiya D; Ando M; Nishijima K; et al.
Chicken ovalbumin promoter is demethylated upon expression in the regions specifically involved in estrogen-responsiveness
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2113319 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
22149126 2006 BMC BIOINFORMATICS 7: Art. No. 103
Shih ACC; Lee DT; Lin L; Peng CL; Chen SH; et al.
SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
00
2314920 2005 BMC BIOLOGY 3: Art. No. 2
Jorgensen FG; Hobolth A; Hornshoj H; Bendixen C; Fredholm M; et al.
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
04
2414921 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
2515522 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 54
Winter EE; Ponting CP
Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
00
26130127 2006 BMC EVOLUTIONARY BIOLOGY 6: Art. No. 5
Danchin EGJ; Gouret P; Pontarotti P
Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
00
27224128 2006 BMC GENETICS 7: Art. No. 2
Miwa M; Inoue-Murayama M; Kobayashi N; Kayang BB; Mizutani M; et al.
Mapping of panda plumage color locus on the microsatellite linkage map of the Japanese quail
01
281181 2004 BMC GENOMICS 5: Art. No. 98
Wahl MB; Caldwell RB; Kierzek AM; Arakawa H; Eyras E; et al.
Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line
02
2914823 2005 BMC GENOMICS 6: Art. No. 41
Niskanen EA; Hytonen VP; Grapputo A; Nordlund HR; Kulomaa MS; et al.
Chicken genome analysis reveals novel genes encoding biotin-binding proteins related to avidin family
01
3015724 2005 BMC GENOMICS 6: Art. No. 139
Otto H; Reche PA; Bazan F; Dittmar K; Haag F; et al.
In silico characterization of the family of PARP-like poly(ADP-ribosyl) transferases (pARTs)
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3133825 2005 BMC GENOMICS 6: Art. No. 167
Kaiserman D; Bird PI
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution
00
32191129 2006 BMC GENOMICS 7: Art. No. 20
Steinke D; Salzburger W; Braasch I; Meyer A
Many genes in fish have species-specific asymmetric rates of molecular evolution
00
33128130 2006 BMC GENOMICS 7: Art. No. 49
Smith J; Speed D; Hocking PM; Talbot RT; Degen WGJ; et al.
Development of a chicken 5 K microarray targeted towards immune function
00
341110131 2006 BMC GENOMICS 7: Art. No. 83
Chakravarti R; Adams JC
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates
00
35275132 2006 BMC NEUROSCIENCE 7: Art. No. 12
Scholz B; Kultima K; Mattsson A; Axelsson J; Brunstrom B; et al.
Sex-dependent gene expression in early brain development of chicken embryos
00
36137133 2006 CANCER RESEARCH 66 (1): 78-86
Pajer P; Pecenka V; Kralova J; Karafiat V; Prukova D; et al.
Identification of potential human oncogenes by mapping the common viral integration sites in avian nephroblastoma
00
3712426 2005 CELL 120 (1): 15-20
Lewis BP; Burge CB; Bartel DP
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
5158
38245134 2006 CELL AND TISSUE RESEARCH 324 (1): 41-53
Mozdziak PE; Wu Q; Bradford JM; Pardue SL; Borwornpinyo S; et al.
Identification of the lacZ insertion site and beta-galactosidase expression in transgenic chickens
00
391105135 2006 CELLULAR AND MOLECULAR LIFE SCIENCES 63 (10): 1125-1140
Cruciani V; Mikalsen SO
The vertebrate connexin family
00
40122327 2005 CHROMOSOMA 114 (4): 212-229
Foster HA; Bridger JM
The genome and the nucleus: a marriage made by evolution - Genome organisation and nuclear architecture
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
4112828 2005 CHROMOSOMA 114 (5): 338-343
de Oliveira EHC; Habermann FA; Lacerda O; Sbalqueiro IJ; Wienberg J; et al.
Chromosome reshuffling in birds of prey: the karyotype of the world's largest eagle (Harpy eagle, Harpia harpyja) compared to that of the chicken (Gallus gallus)
11
4213429 2005 CHROMOSOME RESEARCH 13 (2): 205-214
Bisoni L; Batlle-Morera L; Bird AP; Suzuki M; McQueen HA
Female-specific hyperacetylation of histone H4 in the chicken Z chromosome
12
4312030 2005 CHROMOSOME RESEARCH 13 (2): 215-222
Romanov MN; Daniels LM; Dodgson JB; Delany ME
Integration of the cytogenetic and physical maps of chicken chromosome 17
11
4434831 2005 CHROMOSOME RESEARCH 13 (6): 581-591
Rodrigue KL; May BP; Famula TR; Delany ME
Meiotic instability of chicken ultra-long telomeres and mapping of a 2.8 megabase array to the W-sex chromosome
00
4514932 2005 CHROMOSOME RESEARCH 13 (6): 601-615
Matsuda Y; Nishida-Umehara C; Tarui H; Kuroiwa A; Yamada K; et al.
Highly conserved linkage homology between birds and turtles: Bird and turtle chromosomes are precise counterparts of each other
23
4613133 2005 CHROMOSOME RESEARCH 13 (7): 665-673
Coullin P; Bed'Hom B; Candelier JJ; Vettese D; Maucolin S; et al.
Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds
00
4713434 2005 CHROMOSOME RESEARCH 13 (8): 785-793
Federico C; Cantarella CD; Scavo C; Saccone S; Bed'Hom B; et al.
Avian genomes: different karyotypes but a similar distribution of the GC-richest chromosome regions at interphase
01
48259136 2006 CHROMOSOME RESEARCH 14 (2): 187-202
Kuraku S; Ishijima J; Nishida-Umehara C; Agata K; Kuratani S; et al.
cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids
00
4922335 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (5-6): 301-306
Hartman S; Touchton G; Wynn J; Geng T; Chong NW; et al.
Characterization of expressed sequence tags from a Gallus gallus pineal gland cDNA library
00
50151137 2006 COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY 144 (3): 345-350
Yoshimura T
Molecular mechanism of the photoperiodic response of gonads in birds and mammals
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
51212836 2005 CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY 40 (6): 313-330
Khil PR; Camerini-Otero RD
Molecular features and functional constraints in the evolution of the mammalian X chromosome
00
521223138 2006 CURRENT DRUG METABOLISM 7 (4): 349-365
Reschly EJ; Krasowski MD
Evolution and function of the NR1I nuclear hormone receptor subfamily (VDR, PXR, and CAR) with respect to metabolism of xenobiotics and endogenous compounds
00
5314337 2005 CURRENT GENOMICS 6 (2): 75-80
Smith EJ; Kamara D; Pimentel G; Geng T; Guan X; et al.
Avian genomes: Important resources for understanding vertebrate biology
00
5414238 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (3): 294-300
Lettice LA; Hill RE
Preaxial polydactyly: a model for defective long-range regulation in congenital abnormalities
02
5534739 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 645-651
Fraser JA; Heitman J
Chromosomal sex-determining regions in animals, plants and fungi
02
56351139 2006 CURRENT OPINION IN GENETICS & DEVELOPMENT 16 (3): 213-218
Ross MT; Bentley DR; Tyler-Smith C
The sequences of the human sex chromosomes
00
57137140 2005 CYTOGENETIC AND GENOME RESEARCH 109 (4): 415-479
Schmid M; Nanda I; Hoehn H; Schartl M; Haaf T; et al.
Second report on chicken genes and chromosomes 2005
22
5813041 2005 CYTOGENETIC AND GENOME RESEARCH 111 (2): 118-127
Reed KM; Chaves LD; Hall MK; Knutson TP; Harry DE
A comparative genetic map of the turkey genome
45
59233140 2006 CYTOGENETIC AND GENOME RESEARCH 112 (3-4): 286-295
Nanda I; Karl E; Volobouev V; Griffin DK; Schartl M; et al.
Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes : Accipitridae)
00
60153141 2006 CYTOGENETIC AND GENOME RESEARCH 113 (1-4): 159-164
Okamura K; Ito T
Lessons from comparative analysis of species-specific imprinted genes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
61145142 2006 DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 30 (1-2): 93-100
Lundqvist ML; Middleton DL; Radford C; Warr GW; Magor KE
Immunoglobulins of the non-galliform birds: Antibody expression and repertoire in the duck
00
62136143 2006 DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 30 (7): 659-666
Siwek M; Buitenhuis B; Cornelissen S; Nieuwland M; Knol EF; et al.
Detection of QTL for innate: Non-specific antibody levels binding LPS and LTA in two independent populations of laying hens
00
6314242 2005 DEVELOPMENTAL BIOLOGY 285 (1): 80-90
Dai FP; Yusuf F; Farjah GH; Brand-Saberi B
RNAi-induced targeted silencing of developmental control genes during chicken embryogenesis
11
6414243 2005 DEVELOPMENTAL BIOLOGY 286 (2): 601-617
Matsumata M; Uchikawa M; Kamachi Y; Kondoh H
Multiple N-cadherin enhancers identified by systematic functional screening indicate its Group B1SOX-dependent regulation in neural and placodal development
01
65238144 2006 DEVELOPMENTAL BIOLOGY 294 (2): 554-563
Das RM; Van Hateren NJ; Howell GR; Farrell ER; Bangs FK; et al.
A robust system for RNA interference in the chicken using a modified microRNA operon
00
6616444 2005 DEVELOPMENTAL CELL 8 (1): 9-17
Stern CD
The chick: A great model system becomes even greater
310
6712545 2005 DEVELOPMENTAL DYNAMICS 232 (4): 877-882
Antin PB; Konieczka JH
Genomic resources for chicken
12
68122145 2006 ENDOCRINOLOGY 147 (3): 1067-1073
Nakao N; Takagi T; Iigo M; Tsukamoto T; Yasuo S; et al.
Possible involvement of organic anion transporting polypeptide 1c1 in the photoperiodic response of gonads in birds
01
6912946 2005 EUROPEAN JOURNAL OF CELL BIOLOGY 84 (6): 623-635
Zimek A; Weber K
Terrestrial vertebrates have two keratin gene clusters; striking differences in teleost fish
13
701347 2005 FEBS JOURNAL 272: 117-117
Antonarakis SE
The mystery of conserved non-genic (CNG) sequences
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
71138146 2006 FEBS JOURNAL 273 (3): 523-535
Villarreal L; Tio L; Capdevila M; Atrian S
Comparative metal binding and genomic analysis of the avian (chicken) and mammalian metallothionein
00
72136147 2006 FEBS JOURNAL 273 (8): 1637-1648
Gao F; Zhang CT
Isochore structures in the chicken genome
00
7315048 2005 FEBS LETTERS 579 (15): 3355-3361
Zdobnov EM; von Mering C; Letunic I; Bork P
Consistency of genome-based methods in measuring Metazoan evolution
12
74128148 2006 FEBS LETTERS 580 (5): 1277-1284
Wang Y; Leung FCC
Long inverted repeats in eukaryotic genomes: Recombinogenic motifs determine genomic plasticity
00
75126149 2006 FEBS LETTERS 580 (15): 3610-3616
Xu HT; Wang XB; Du ZL; Li N
Identification of microRNAs from different tissues of chicken embryo and adult chicken
00
76142150 2006 FOOD CHEMISTRY 99 (4): 702-710
Raikos V; Hansen R; Campbell L; Euston SR
Separation and identification of hen egg protein isoforms using SDS-PAGE and 2D gel electrophoresis with MALDI-TOF mass spectrometry
00
7717749 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
7811450 2005 GENE 362: 117-124
Benkel BF; Nguyen T; Uno Y; de Leon FAP; Hickey DA
Structural organization and chromosomal location of the chicken alpha-amylase gene family
00
79169151 2006 GENE 365: 57-66
Watanabe M; Nikaido M; Tsuda TT; Inoko H; Mindell DP; et al.
The rise and fall of the CR1 subfamily in the lineage leading to penguins
00
80122152 2006 GENE 365: 83-87
Hokii Y; Kubo A; Ogasawara T; Nogi Y; Taneda A; et al.
Twelve novel C-elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
81142153 2006 GENE 365: 130-136
Noda AO; Ikeo K; Gojobori T
Comparative genome analyses of nervous system-specific genes
00
82240154 2006 GENE 368: 37-45
Padhi BK; Akimenko MA; Ekker M
Independent expansion of the keratin gene family in teleostean fish and mammals: An insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish
00
83124155 2006 GENE 372: 26-32
Diaz-Gil G; Gomez-Esquer F; Agudo D; Delcan J; Martinez-Arribas F; et al.
Characterization of a human Bid homologue protein from Gallus gallus
00
84123156 2006 GENE 373: 44-51
MacLea KS; Cheng HH
Cloning and expression of deoxyribonuclease II1 from chicken
00
85141157 2006 GENES & DEVELOPMENT 20 (10): 1365-1377
Davey MG; Paton IR; Yin Y; Schmidt M; Bangs FK; et al.
The chicken talpid(3) gene encodes a novel protein essential for Hedgehog signaling
00
86165158 2006 GENES CHROMOSOMES & CANCER 45 (7): 676-691
Angeloni D; ter Elst A; Wei MH; van der Veen AY; Braga EA; et al.
Analysis of a new homozygous deletion in the tumor suppressor region at 3p12.3 reveals two novel intronic noncoding RNA genes
00
8715151 2005 GENETICAL RESEARCH 86 (2): 115-125
Jacobsson L; Park HB; Wahlberg P; Fredriksson R; Perez-Enciso M; et al.
Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens
12
8813752 2005 GENETICS 170 (1): 313-326
Go Y; Satta Y; Takenaka O; Takahata N
Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates
28
8913653 2005 GENETICS 171 (3): 1173-1181
Heifetz EM; Fulton JE; O'Sullivan N; Zhao H; Dekkers JCM; et al.
Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations
00
9013354 2005 GENOME BIOLOGY 6 (1): Art. No. R6
Caldwell RB; Kierzek AM; Arakawa H; Bezzubov Y; Zaim J; et al.
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis
06
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9111555 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
9213956 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
93231159 2006 GENOME BIOLOGY 7 (1): Art. No. R7
Zhi DG; Raphael BJ; Price AL; Tang HX; Pevzner PA
Identifying repeat domains in large genomes
00
94164160 2006 GENOME BIOLOGY 7 (5): Art. No. R43
Blomme T; Vandepoele K; De Bodt S; Simillion C; Maere S; et al.
The gain and loss of genes during 600 million years of vertebrate evolution
00
9516357 2005 GENOME RESEARCH 15 (7): 901-913
Cooper GM; Stone EA; Asimenos G; Green ED; Batzoglou S; et al.
Distribution and intensity of constraint in mammalian genomic sequence
28
9649258 2005 GENOME RESEARCH 15 (8): 1034-1050
Siepel A; Bejerano G; Pedersen JS; Hinrichs AS; Hou MM; et al.
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
333
97110359 2005 GENOME RESEARCH 15 (8): 1051-1060
King DC; Taylor J; Elnitski L; Chiaromonte F; Miller W; et al.
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
06
9812960 2005 GENOME RESEARCH 15 (10): 1373-1378
Keightley PD; Kryukov GV; Sunyaev S; Halligan DL; Gaffney DJ
Evolutionary constraints in conserved nongenic sequences of mammals
03
99106061 2005 GENOME RESEARCH 15 (12): 1692-1698
Burt DW
Chicken genome: Current status and future opportunities
00
10017062 2005 GENOME RESEARCH 15 (12): 1777-1786
Brent MR
Genome annotation past, present, and future: How to define an ORF at each locus
01

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