Ranked All-Publication list   Historiographs Glossary  HistCite Guide  About
Mon Jul 31 15:56:18 2006

Hillier LW, Miller W, Birney E, et al.
Sequence and comparative analysis of the chicken genome
provide unique perspectives on vertebrate evolution
NATURE 432 (7018): 695-716 DEC 9 2004
and the citing papers
Nodes: 203, Authors: 1483, Journals: 94, Outer References: 8307, Words: 911
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by LCR.

Page 1 of 3: [  1  2  3 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
1106061 2005 GENOME RESEARCH 15 (12): 1692-1698
Burt DW
Chicken genome: Current status and future opportunities
00
2655190 2006 NUCLEIC ACIDS RESEARCH 34 (9): Art. No. e65
Tran T; Havlak P; Miller J
MicroRNA enrichment among short 'ultraconserved' sequences in insects
00
349258 2005 GENOME RESEARCH 15 (8): 1034-1050
Siepel A; Bejerano G; Pedersen JS; Hinrichs AS; Hou MM; et al.
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
333
4411989 2005 NATURE 438 (7069): 803-819
Lindblad-Toh K; Wade CM; Mikkelsen TS; Karlsson EK; Jaffe DB; et al.
Genome sequence, comparative analysis and haplotype structure of the domestic dog
329
533825 2005 BMC GENOMICS 6: Art. No. 167
Kaiserman D; Bird PI
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution
00
634831 2005 CHROMOSOME RESEARCH 13 (6): 581-591
Rodrigue KL; May BP; Famula TR; Delany ME
Meiotic instability of chicken ultra-long telomeres and mapping of a 2.8 megabase array to the W-sex chromosome
00
734739 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 645-651
Fraser JA; Heitman J
Chromosomal sex-determining regions in animals, plants and fungi
02
8351139 2006 CURRENT OPINION IN GENETICS & DEVELOPMENT 16 (3): 213-218
Ross MT; Bentley DR; Tyler-Smith C
The sequences of the human sex chromosomes
00
9329161 2006 GENOME RESEARCH 16 (3): 306-310
Froenicke L; Caldes MG; Graphodatsky A; Muller S; Lyons LA; et al.
Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes?
01
10356167 2006 IMMUNOGENETICS 58 (5-6): 362-373
Cannon JP; Haire RN; Mueller MG; Litman RT; Eason DD; et al.
Ancient divergence of a complex family of immune-type receptor genes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11339184 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (5): 964-972
Go Y
Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates
00
12327188 2006 NATURE 440 (7087): 1045-1049
Zody MC; Garber M; Adams DJ; Sharpe T; Harrow J; et al.
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage
01
13321198 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (8): 2740-2745
Kamal M; Xie XH; Lander ES
A large family of ancient repeat elements in the human genome is under strong selection
02
142106 2005 ANIMAL BIOTECHNOLOGY 16 (2): 81-102
Reed KM; Knutson TP; Krueth SB; Sullivan LR; Chaves LD
In silco mapping of ESTs from the Turkey (Meleagris gallopavo)
00
15211713 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 381-406
Giallourakis C; Henson C; Reich M; Xie XH; Mootha VK
Disease gene discovery through integrative genomics
01
1622335 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (5-6): 301-306
Hartman S; Touchton G; Wynn J; Geng T; Chong NW; et al.
Characterization of expressed sequence tags from a Gallus gallus pineal gland cDNA library
00
17212836 2005 CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY 40 (6): 313-330
Khil PR; Camerini-Otero RD
Molecular features and functional constraints in the evolution of the mammalian X chromosome
00
1826370 2005 IMMUNOGENETICS 57 (8): 590-600
Maruoka T; Tanabe H; Chiba M; Kasahara M
Chicken CD1 genes are located in the MHC: CD1 and endothelial protein C receptor genes constitute a distinct subfamily of class-I-like genes that predates the emergence of mammals
00
1923488 2005 NATURE 437 (7058): 551-555
Nusbaum C; Zody MC; Borowsky ML; Kamal M; Kodira CD; et al.
DNA sequence and analysis of human chromosome 18
13
2022691 2005 NATURE GENETICS 37 (5): 495-500
Krek A; Grun D; Poy MN; Wolf R; Rosenberg L; et al.
Combinatorial microRNA target predictions
168
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2121492 2005 NATURE GENETICS 37 (10): 1041-1043
Itoh T; Toyoda A; Taylor TD; Sakaki Y; Hattori M
Identification of large ancient duplications associated with human gene deserts
00
22210395 2005 NEURON 48 (3): 455-464
Scott K
Taste recognition: Food for thought
02
23284110 2005 PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 272 (1578): 2289-2298
Hansson B; Akesson M; Slate J; Pemberton JM
Linkage mapping reveals sex-dimorphic map distances in a passerine bird
00
24211121 2006 ANIMAL BIOTECHNOLOGY 17 (1): 73-80
Reed KM; Hall MK; Chaves LD; Knutson TP
Single nucleotide polymorphisms for integrative mapping in the Turkey (Meleagris gallopavo)
00
2525122 2006 ANIMAL GENETICS 37 (1): 84-84
Reed KM; Mendoza KM
Assignment of turkey linkage group M22 to the comparative turkey/chicken map
00
26217124 2006 ANIMAL GENETICS 37 (2): 130-138
Chaves LD; Knutson TP; Krueth SB; Reed KM
Using the chicken genome sequence in the development and mapping of genetic markers in the turkey (Meleagris gallopavo)
00
27224128 2006 BMC GENETICS 7: Art. No. 2
Miwa M; Inoue-Murayama M; Kobayashi N; Kayang BB; Mizutani M; et al.
Mapping of panda plumage color locus on the microsatellite linkage map of the Japanese quail
01
28275132 2006 BMC NEUROSCIENCE 7: Art. No. 12
Scholz B; Kultima K; Mattsson A; Axelsson J; Brunstrom B; et al.
Sex-dependent gene expression in early brain development of chicken embryos
00
29245134 2006 CELL AND TISSUE RESEARCH 324 (1): 41-53
Mozdziak PE; Wu Q; Bradford JM; Pardue SL; Borwornpinyo S; et al.
Identification of the lacZ insertion site and beta-galactosidase expression in transgenic chickens
00
30259136 2006 CHROMOSOME RESEARCH 14 (2): 187-202
Kuraku S; Ishijima J; Nishida-Umehara C; Agata K; Kuratani S; et al.
cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
31233140 2006 CYTOGENETIC AND GENOME RESEARCH 112 (3-4): 286-295
Nanda I; Karl E; Volobouev V; Griffin DK; Schartl M; et al.
Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes : Accipitridae)
00
32238144 2006 DEVELOPMENTAL BIOLOGY 294 (2): 554-563
Das RM; Van Hateren NJ; Howell GR; Farrell ER; Bangs FK; et al.
A robust system for RNA interference in the chicken using a modified microRNA operon
00
33240154 2006 GENE 368: 37-45
Padhi BK; Akimenko MA; Ekker M
Independent expansion of the keratin gene family in teleostean fish and mammals: An insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish
00
34231159 2006 GENOME BIOLOGY 7 (1): Art. No. R7
Zhi DG; Raphael BJ; Price AL; Tang HX; Pevzner PA
Identifying repeat domains in large genomes
00
35256163 2006 GENOME RESEARCH 16 (7): 864-874
Nishihara H; Smit AFA; Okada N
Functional noncoding sequences derived from SINEs in the mammalian genome
00
36250164 2006 GENOMICS 87 (1): 181-190
Luo MZ; Yu YS; Kim HR; Kudrna D; Itoh Y; et al.
Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region
02
37240166 2006 IMMUNOGENETICS 58 (2-3): 180-190
Viertlboeck BC; Schmitt R; Gobel TW
The chicken immunoregulatory receptor families SIRP, TREM, and CMRF35/CD300L
00
38267183 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (3): 675-682
Chen FC; Wang SS; Chen CJ; Li WH; Chuang TJ
Alternatively and constitutively spliced exons are subject to different evolutionary forces
02
392140187 2006 MOLECULAR ECOLOGY 15 (5): 1299-1320
Dawson DA; Burke T; Hansson B; Pandhal J; Hale MC; et al.
A predicted microsatellite map of the passerine genome based on chicken-passerine sequence similarity
01
40226191 2006 PHYSIOLOGICAL GENOMICS 25 (2): 216-223
Park HB; Jacobsson L; Wahlberg P; Siegel PB; Andersson L
QTL analysis of body composition and metabolic traits in an intercross between chicken lines divergently selected for growth
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
41262192 2006 PHYSIOLOGICAL GENOMICS 25 (3): 414-425
Ellestad LE; Carre W; Muchow M; Jenkins SA; Wang XF; et al.
Gene expression profiling during cellular differentiation in the embryonic pituitary gland using cDNA microarrays
00
42249193 2006 PHYSIOLOGICAL GENOMICS 25 (3): 514-524
Carre W; Wang XF; Porter TE; Nys Y; Tang JS; et al.
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index
00
4328194 2006 POULTRY SCIENCE 85 (2): 198-199
Qureshi MA
Ancillary scientists symposium: Conservation of avian genetic resources: Current opportunities and challenges - Introduction
00
44216195 2006 POULTRY SCIENCE 85 (2): 223-226
Delany ME
Avian genetic stocks: The high and low points from an academia researcher
00
45232202 2006 TRENDS IN GENETICS 22 (4): 203-210
Kohn M; Hgell J; Vogel W; Minich P; Kehrer-Sawatzki H; et al.
Reconstruction of a 450-My-old ancestral vertebrate protokaryotype
00
461181 2004 BMC GENOMICS 5: Art. No. 98
Wahl MB; Caldwell RB; Kierzek AM; Arakawa H; Eyras E; et al.
Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line
02
47143 2004 NATURE 432 (7019): 799-799
Miller MM
Genome news highlights loss of chicken strains - Future research is already under threat, as budget cuts wipe out irreplaceable lines.
35
4811594 2005 ADVANCES IN PARASITOLOGY, VOL 60 60: 285-330
Shirley MW; Smith AL; Tomley FM
The biology of avian Eimeria with an emphasis on their control by vaccination
01
4911455 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
501177 2005 ANIMAL GENETICS 36 (3): 216-222
Aerts JA; Veenendaal T; van der Poel JJ; Crooijmans RPMA; Groenen MAM
Chromosomal assignment of chicken clone contigs by extending the consensus linkage map
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
511328 2005 ANIMAL GENETICS 36 (5): 396-400
Miwa M; Inoue-Murayama M; Kayang BB; Minvielle F; Monvoisin JL; et al.
Mapping of plumage colour and blood protein loci on the microsatellite linkage map of the Japanese quail
13
521399 2005 ANIMAL GENETICS 36 (5): 401-407
Beaumont C; Roussot O; Feve K; Vignoles F; Leroux S; et al.
A genome scan with AFLP((TM)) markers to detect fearfulness-related QTLs in Japanese quail
00
531410 2005 ANIMAL GENETICS 36 (5): 438-443
Reed KM
In silico comparative mapping of 278 genomic survey sequences from the turkey (Meleagris gallopavo)
00
5414211 2005 ANIMAL GENETICS 36 (6): 468-476
Rabie TSKM; Crooijmans RPMA; Bovenhuis H; Vereijken ALJ; Veenendaal T; et al.
Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome
00
55110212 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 143-164
Stone EA; Cooper GM; Sidow A
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
13
5617714 2005 ANNUAL REVIEW OF MICROBIOLOGY 59: 191-209
Snel B; Huynen MA; Dutilh BE
Genome trees and the nature of genome evolution
06
5718615 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 749-756
Moore RJ; Doran TJ; Wise TG; Riddell S; Granger K; et al.
Chicken functional genomics: an overview
00
5813316 2005 AVIAN PATHOLOGY 34 (4): 324-331
Zhang HM; Bacon LD; Cheng HH; Hunt HD
Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and subgroup E avian leukosis viruses in White Leghorns
00
5912317 2005 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 1734 (2): 136-142
Matsuyama H; Sato K; Nakamura Y; Suzuki K; Akiba Y
Modulation of regulatory factors involved in cholesterol metabolism in response to feeding of pravastatin-or cholesterol-supplemented diet in chickens
00
6011618 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6113319 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
6214920 2005 BMC BIOLOGY 3: Art. No. 2
Jorgensen FG; Hobolth A; Hornshoj H; Bendixen C; Fredholm M; et al.
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
04
6314921 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
6415522 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 54
Winter EE; Ponting CP
Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
00
6514823 2005 BMC GENOMICS 6: Art. No. 41
Niskanen EA; Hytonen VP; Grapputo A; Nordlund HR; Kulomaa MS; et al.
Chicken genome analysis reveals novel genes encoding biotin-binding proteins related to avidin family
01
6615724 2005 BMC GENOMICS 6: Art. No. 139
Otto H; Reche PA; Bazan F; Dittmar K; Haag F; et al.
In silico characterization of the family of PARP-like poly(ADP-ribosyl) transferases (pARTs)
02
6712426 2005 CELL 120 (1): 15-20
Lewis BP; Burge CB; Bartel DP
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
5158
68122327 2005 CHROMOSOMA 114 (4): 212-229
Foster HA; Bridger JM
The genome and the nucleus: a marriage made by evolution - Genome organisation and nuclear architecture
01
6912828 2005 CHROMOSOMA 114 (5): 338-343
de Oliveira EHC; Habermann FA; Lacerda O; Sbalqueiro IJ; Wienberg J; et al.
Chromosome reshuffling in birds of prey: the karyotype of the world's largest eagle (Harpy eagle, Harpia harpyja) compared to that of the chicken (Gallus gallus)
11
7013429 2005 CHROMOSOME RESEARCH 13 (2): 205-214
Bisoni L; Batlle-Morera L; Bird AP; Suzuki M; McQueen HA
Female-specific hyperacetylation of histone H4 in the chicken Z chromosome
12
#LCRNCRNode / Date / Journal / AuthorLCSGCS
7112030 2005 CHROMOSOME RESEARCH 13 (2): 215-222
Romanov MN; Daniels LM; Dodgson JB; Delany ME
Integration of the cytogenetic and physical maps of chicken chromosome 17
11
7214932 2005 CHROMOSOME RESEARCH 13 (6): 601-615
Matsuda Y; Nishida-Umehara C; Tarui H; Kuroiwa A; Yamada K; et al.
Highly conserved linkage homology between birds and turtles: Bird and turtle chromosomes are precise counterparts of each other
23
7313133 2005 CHROMOSOME RESEARCH 13 (7): 665-673
Coullin P; Bed'Hom B; Candelier JJ; Vettese D; Maucolin S; et al.
Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds
00
7413434 2005 CHROMOSOME RESEARCH 13 (8): 785-793
Federico C; Cantarella CD; Scavo C; Saccone S; Bed'Hom B; et al.
Avian genomes: different karyotypes but a similar distribution of the GC-richest chromosome regions at interphase
01
7514337 2005 CURRENT GENOMICS 6 (2): 75-80
Smith EJ; Kamara D; Pimentel G; Geng T; Guan X; et al.
Avian genomes: Important resources for understanding vertebrate biology
00
7614238 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (3): 294-300
Lettice LA; Hill RE
Preaxial polydactyly: a model for defective long-range regulation in congenital abnormalities
02
77137140 2005 CYTOGENETIC AND GENOME RESEARCH 109 (4): 415-479
Schmid M; Nanda I; Hoehn H; Schartl M; Haaf T; et al.
Second report on chicken genes and chromosomes 2005
22
7813041 2005 CYTOGENETIC AND GENOME RESEARCH 111 (2): 118-127
Reed KM; Chaves LD; Hall MK; Knutson TP; Harry DE
A comparative genetic map of the turkey genome
45
7914242 2005 DEVELOPMENTAL BIOLOGY 285 (1): 80-90
Dai FP; Yusuf F; Farjah GH; Brand-Saberi B
RNAi-induced targeted silencing of developmental control genes during chicken embryogenesis
11
8014243 2005 DEVELOPMENTAL BIOLOGY 286 (2): 601-617
Matsumata M; Uchikawa M; Kamachi Y; Kondoh H
Multiple N-cadherin enhancers identified by systematic functional screening indicate its Group B1SOX-dependent regulation in neural and placodal development
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8116444 2005 DEVELOPMENTAL CELL 8 (1): 9-17
Stern CD
The chick: A great model system becomes even greater
310
8212545 2005 DEVELOPMENTAL DYNAMICS 232 (4): 877-882
Antin PB; Konieczka JH
Genomic resources for chicken
12
8312946 2005 EUROPEAN JOURNAL OF CELL BIOLOGY 84 (6): 623-635
Zimek A; Weber K
Terrestrial vertebrates have two keratin gene clusters; striking differences in teleost fish
13
841347 2005 FEBS JOURNAL 272: 117-117
Antonarakis SE
The mystery of conserved non-genic (CNG) sequences
00
8515048 2005 FEBS LETTERS 579 (15): 3355-3361
Zdobnov EM; von Mering C; Letunic I; Bork P
Consistency of genome-based methods in measuring Metazoan evolution
12
8617749 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
8711450 2005 GENE 362: 117-124
Benkel BF; Nguyen T; Uno Y; de Leon FAP; Hickey DA
Structural organization and chromosomal location of the chicken alpha-amylase gene family
00
8815151 2005 GENETICAL RESEARCH 86 (2): 115-125
Jacobsson L; Park HB; Wahlberg P; Fredriksson R; Perez-Enciso M; et al.
Many QTLs with minor additive effects are associated with a large difference in growth between two selection lines in chickens
12
8913752 2005 GENETICS 170 (1): 313-326
Go Y; Satta Y; Takenaka O; Takahata N
Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates
28
9013653 2005 GENETICS 171 (3): 1173-1181
Heifetz EM; Fulton JE; O'Sullivan N; Zhao H; Dekkers JCM; et al.
Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9113354 2005 GENOME BIOLOGY 6 (1): Art. No. R6
Caldwell RB; Kierzek AM; Arakawa H; Bezzubov Y; Zaim J; et al.
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis
06
9211555 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
9313956 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
9416357 2005 GENOME RESEARCH 15 (7): 901-913
Cooper GM; Stone EA; Asimenos G; Green ED; Batzoglou S; et al.
Distribution and intensity of constraint in mammalian genomic sequence
28
95110359 2005 GENOME RESEARCH 15 (8): 1051-1060
King DC; Taylor J; Elnitski L; Chiaromonte F; Miller W; et al.
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
06
9612960 2005 GENOME RESEARCH 15 (10): 1373-1378
Keightley PD; Kryukov GV; Sunyaev S; Halligan DL; Gaffney DJ
Evolutionary constraints in conserved nongenic sequences of mammals
03
9717062 2005 GENOME RESEARCH 15 (12): 1777-1786
Brent MR
Genome annotation past, present, and future: How to define an ORF at each locus
01
9816063 2005 GENOME RESEARCH 15 (12): 1787-1797
Webber C; Ponting CP
Hotspots of mutation and breakage in dog and human chromosomes
00
9915664 2005 GENOMICS 86 (5): 566-580
Zebhauser R; Kammerer R; Eisenried A; McLellan A; Moore T; et al.
Identification of a novel group of evolutionarily conserved members within the rapidly diverging murine Cea family
03
10016765 2005 GENOMICS 86 (6): 731-738
Liu WS; Eyer K; Yasue H; Roelofs B; Hiraiwa H; et al.
A 12,000-rad porcine radiation hybrid (IMNpRH2) panel refines the conserved synteny between SSC12 and HSA17
00

Page 1 of 3: [  1  2  3 ]
Generated by HistCite 2006.05.24