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A protein interaction map of Drosophila melanogaster
Giot L, Bader JS, Brouwer C, Chaudhuri A, et al.
SCIENCE 302 (5651): 1727-1736 DEC 5 2003
and the citing papers

Nodes: 210, Authors: 867, Journals: 101, Outer References: 8008, Words: 788
Collection span: 2003 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
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#LCRNCRNode / Date / Journal / AuthorLCSGCS
12961 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 431-443
Jorgensen P; Breitkreutz BJ; Breitkreutz K; Stark C; Liu G; et al.
Harvesting the genome's bounty: Integrative genomics
00
20572 2003 SCIENCE 302 (5651): 1727-1736
Giot L; Bader JS; Brouwer C; Chaudhuri A; Kuang B; et al.
A protein interaction map of Drosophila melanogaster
209209
311223 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 267-293
de Hoog CL; Mann M
Proteomics
05
411734 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
04
51275 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 324 (1): 326-332
Yoshida M; Inoue T; Shoji W; Ikawa S; Obinata M
Reporter gene stimulation by MIDA1 through its DnaJ homology region
00
61616 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 325 (4): 1115-1121
Boutros R; Fanayan S; Shehata M; Byrne JA
The tumor protein D52 family: many pieces, many puzzles
00
721597 2004 BIOCHEMICAL JOURNAL 381: 1-12
Wei GH; Liu DP; Liang CC
Charting gene regulatory networks: strategies, challenges and perspectives
15
81338 2004 BIOCHEMISTRY 43 (32): 10353-10363
de Felipe KS; Carter BT; Althoff EA; Cornish VW
Correlation between ligand-receptor affinity and the transcription readout in a yeast three-hybrid system
03
92299 2004 BIOCHIMIE 86 (9-10): 625-632
Colland F; Daviet L
Integrating a functional proteomic approach into the target discovery process
00
1018010 2004 BIOESSAYS 26 (6): 629-638
Bomsztyk K; Denisenko O; Ostrowski J
HnRNP K: One protein multiple processes
014
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11210011 2004 BIOESSAYS 26 (12): 1333-1343
Krause R; von Mering C; Bork P; Dandekar T
Shared components of protein complexes-versatile building blocks or biochemical artefacts?
11
1223312 2004 BIOINFORMATICS 20 (17): 3013-3020
King AD; Przulj N; Jurisica I
Protein complex prediction via cost-based clustering
01
1315113 2004 BIOINFORMATICS 20 (17): 3221-3235
Thomas R; Mehrotra S; Papoutsakis ET; Hatzimanikatis V
A model-based optimization framework for the inference on gene regulatory networks from DNA array data
00
1412014 2004 BIOINFORMATICS 20 (17): 3273-3276
Huang TW; Tien AC; Lee YCG; Huang WS; Lee YCG; et al.
POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome
12
1512415 2004 BIOINFORMATICS 20 (18): 3346-3352
Albert I; Albert R
Conserved network motifs allow protein-protein interaction prediction
11
1623216 2004 BIOINFORMATICS 20 (18): 3508-3515
Przulj N; Corneil DG; Jurisica I
Modeling interactome: scale-free or geometric?
00
17117517 2004 BIOLOGICAL CHEMISTRY 385 (12): 1121-1136
Helmreich EJM
Structural flexibility of small GTPases. Can it explain their functional versatility?*
00
1811718 2004 BIOTECHNIQUES 37 (5): 840-843
Evans DRH; Swirsding KA; Taillon BE; Simons JF
"One plate three-reporter" assay format for the detection and validation of yeast two-hybrid interactions
00
1914119 2004 BMC BIOINFORMATICS 5: Art. No. 75
Lett D; Hsing M; Pio F
Interaction profile-based protein classification of death domain
00
2011320 2004 BMC BIOINFORMATICS 5: Art. No. 95
Brun C; Herrmann C; Guenoche A
Clustering proteins from interaction networks for the prediction of cellular functions
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2111821 2004 BMC BIOINFORMATICS 5: Art. No. 154
Lin N; Wu BL; Jansen R; Gerstein M; Zhao HY
Information assessment on predicting protein-protein interactions
02
2212522 2004 BMC BIOINFORMATICS 5: Art. No. 179
Pellegrino M; Provero P; Silengo L; Di Cunto F
CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species
00
2311823 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 9
Maslov S; Sneppen K; Eriksen KA; Yan KK
Upstream plasticity and downstream robustness in evolution of molecular networks
04
2413424 2004 BMC GENETICS 5: Art. No. 15
Schwartz YB; Boykova T; Belyaeva ES; Ashburner M; Zhimulev IF
Molecular characterization of the singed wings locus of Drosophila melanogaster
00
25110725 2004 BRAIN BEHAVIOR AND EVOLUTION 64 (3): 182-197
Fritzsch B; Beisel KW
Keeping sensory cells and evolving neurons to connect them to the brain: Molecular conservation and novelties in vertebrate ear development
01
2616226 2004 CANCER BIOLOGY & THERAPY 3 (12): 1236-1242
Muller AJ; DuHadaway JB; Donover PS; Sutanto-Ward E; Prendergast GC
Targeted deletion of the suppressor gene Bin1/Amphiphysin2 accentuates the neoplastic character of transformed mouse fibroblasts
00
27114527 2004 CELL 116 (2): 191-203
Pawson T
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
447
2816528 2004 CELL 119 (5): 679-691
Saito H; Kubota M; Roberts RW; Chi QY; Matsunami H
RTP family members induce functional expression of mammalian odorant receptors
06
2913129 2004 CELL CYCLE 3 (6): 707-710
Sharp DJ; Rogers GC
A Kin I-dependent Pacman-flux mechanism for anaphase A
00
3017330 2004 CELL CYCLE 3 (11): 1440-1450
Iyer LM; Koonin EV; Aravind L
Novel predicted peptidases with a potential role in the ubiquitin signaling pathway
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3111931 2004 COMPARATIVE AND FUNCTIONAL GENOMICS 5 (2): 163-168
Choi C; Krull M; Kel A; Kel-Margoulis O; Pistor S; et al.
TRANSPATH (R) - a high quality database focused on signal transduction
01
3225432 2004 COMPTES RENDUS BIOLOGIES 327 (5): 409-420
Eisenstein M; Katchalski-Katzir E
On proteins, grids, correlations, and docking
03
3313633 2004 CURRENT BIOLOGY 14 (17): 1550-1558
Wharton SJ; Basu SP; Ashe HL
Smad affinity can direct distinct readouts of the embryonic extracellular Dpp gradient in Drosophila
12
3414534 2004 CURRENT BIOLOGY 14 (23): 2162-2167
Landthaler M; Yalcin A; Tuschl T
The human DiGeorge syndrome critical region gene 8 and its D-melanogaster homolog are required for miRNA biogenesis
06
3518135 2004 CURRENT GENOMICS 5 (7): 545-557
Smith KD; Thorsson V
Exploring toll-like receptor regulation of innate immunity with the tools of systems biology
00
36111136 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 602-613
Tyers M
Cell cycle goes global
00
3719837 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 614-622
Humbert P; Brumby AM; Quinn LM; Richardson HE
New tricks for old dogs: unexpected roles for cell cycle regulators revealed using animal models
00
3817838 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8 (1): 81-90
Sharom JR; Bellows DS; Tyers M
From large networks to small molecules
18
3915139 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8 (3): 334-338
Clemons PA
Complex phenotypic assays in high-throughput screening
02
4016740 2004 CURRENT OPINION IN GENETICS & DEVELOPMENT 14 (4): 336-342
Fraser AG; Marcotte EM
Development through the eyes of functional genomics
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
4116541 2004 CURRENT OPINION IN IMMUNOLOGY 16 (4): 418-427
Zal T; Gascoigne NR
Using live FRET imaging to reveal early protein-protein interactions during T cell activation
13
4226642 2004 CURRENT OPINION IN IMMUNOLOGY 16 (5): 674-683
Zal T; Gascoigne NRJ
Using live FRET imaging to reveal early protein-protein interactions during T cell activation (vol 16, pg 418, 2004)
00
4315943 2004 CURRENT OPINION IN STRUCTURAL BIOLOGY 14 (2): 242-249
Wodak SJ; Mendez R
Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications
014
4427544 2004 CURRENT OPINION IN STRUCTURAL BIOLOGY 14 (3): 292-299
Bork P; Jensen LJ; von Mering C; Ramani AK; Lee I; et al.
Protein interaction networks from yeast to human
310
45118745 2004 CURRENT OPINION IN STRUCTURAL BIOLOGY 14 (3): 313-324
Russell RB; Alber F; Aloy P; Davis FP; Korkin D; et al.
A structural perspective on protein-protein interactions
215
4616846 2004 DEVELOPMENT 131 (18): 4501-4509
Schroter RH; Lier S; Holz A; Bogdan S; Klambt C; et al.
kette and blown fuse interact genetically during the second fusion step of myogenesis in Drosophila
02
4719147 2004 DEVELOPMENT 131 (23): 5871-5881
Brugmann SA; Pandur PD; Kenyon KL; Pignoni F; Moody SA
Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and repressor
03
4817548 2004 DEVELOPMENTAL BIOLOGY 275 (2): 473-492
Kearney JB; Wheeler SR; Estes P; Parente B; Crews ST
Gene expression profiling of the developing Drosophila CNS midline cells
01
4936449 2004 ELECTROPHORESIS 25 (21-22): 3479-3491
Marko-Varga GA; Nilsson J; Laurell T
New directions of miniaturization within the biomarker research area
00
5015650 2004 EMBO JOURNAL 23 (13): 2641-2650
Bachand F; Silver PA
PRMT3 is a ribosomal protein methyltransferase that affects the cellular levels of ribosomal subunits
08
#LCRNCRNode / Date / Journal / AuthorLCSGCS
51116351 2004 EUROPEAN JOURNAL OF BIOCHEMISTRY 271 (15): 3155-3170
Albrecht M; Golatta M; Wullner U; Lengauer T
Structural and functional analysis of ataxin-2 and ataxin-3
02
5215252 2004 EXPERT REVIEW OF PROTEOMICS 1 (1): 111-121
Titz B; Schlesner M; Uetz P
What do we learn from high-throughput protein interaction data?
03
5315053 2004 EXPERT REVIEW OF PROTEOMICS 1 (2): 165-178
Sem DS
Chemical proteomics from a nuclear magnetic resonance spectroscopy perspective
00
5418054 2004 EXPERT REVIEW OF PROTEOMICS 1 (2): 193-205
Grijoriev A
Understanding the yeast proteome: a bioinformatics perspective
00
5515555 2004 EXPERT REVIEW OF PROTEOMICS 1 (2): 239-249
Pellegrini M; Haynor D; Johnson JM
Protein interaction networks
01
5624456 2004 FEBS LETTERS 567 (1): 74-79
Castagnoli L; Costantini A; Dall'armi C; Gonfloni S; Montecchi-Palazzi L; et al.
Selectivity and promiscuity in the interaction network mediated by protein recognition modules
02
57210157 2004 GENES & DEVELOPMENT 18 (12): 1371-1384
Kosak ST; Groudine M
Form follows function: the genomic organization of cellular differentiation
012
5812858 2004 GENESIS 39 (4): 280-287
Stephenson EC
Localization of swallow-Green Fluorescent Protein in Drosophila oogenesis and implications for the role of swallow in RNA localization
01
5915359 2004 GENOME BIOLOGY 5 (5): Art. No. R30
Aravind L; Iyer LM; Leipe DD; Koonin EV
A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain
00
6022160 2004 GENOME BIOLOGY 5 (9): Art. No. R63
Lehner B; Fraser AG
A first-draft human protein-interaction map
010
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6125661 2004 GENOME BIOLOGY 5 (12): Art. No. R96
Stanyon CA; Liu GZ; Mangiola BA; Patel N; Giot L; et al.
A Drosophila protein-interaction map centered on cell-cycle regulators
03
6214362 2004 GENOME RESEARCH 14 (7): 1315-1323
Lehner B; Sanderson CM
A protein interaction framework for human mRNA degradation
36
6315363 2004 GENOME RESEARCH 14 (7): 1324-1332
Colland F; Jacq X; Trouplin V; Mougin C; Groizeleau C; et al.
Functional proteomics mapping of a human signaling pathway
613
6438564 2004 GENOME RESEARCH 14 (10B): 2001-2009
Brasch MA; Hartley JL; Vidal M
ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list
16
6512265 2004 GENOME RESEARCH 14 (10B): 2029-2033
Uetz P; Rajagopala SV; Dong YA; Haas J
From ORFeomes to protein interaction maps in viruses
12
6614866 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (27): 28393-28401
Starcevic M; Dell'Angelica EC
Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1)
05
6717467 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (34): 36059-36071
Stuchell MD; Garrus JE; Muller B; Stray KM; Ghaffarian S; et al.
The human endosomal sorting complex required for transport (ESCRT-I) and its role in HIV-1 budding
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6827668 2004 JOURNAL OF LIPID RESEARCH 45 (10): 1793-1805
Ghazalpour A; Doss S; Yang X; Aten J; Toomey EM; et al.
Toward a biological network for atherosclerosis
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6914969 2004 JOURNAL OF MOLECULAR BIOLOGY 342 (5): 1613-1624
Sgraja T; Ulschmid J; Becker K; Schneuwly S; Klebe G; et al.
Structural insights into the neuroprotective-acting carbonyl reductase Sniffer of Drosophila melanogaster
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7015470 2004 JOURNAL OF MOLECULAR RECOGNITION 17 (3): 198-208
Sergi M; Zurawski J; Cocklin S; Chaiken I
Proteins, recognition networks and developing interfaces for macromolecular biosensing
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
7115971 2004 JOURNAL OF NEUROCYTOLOGY 33 (1): 131-151
Rash JE; Pereda A; Kamasawa N; Furman CS; Yasumura T; et al.
High-resolution proteomic mapping in the vertebrate central nervous system: Close proximity of connexin35 to NMDA glutamate receptor clusters and co-localization of connexin36 with immunoreactivity for zonula occludens protein-1 (ZO-1)
03
7219072 2004 JOURNAL OF PROTEOME RESEARCH 3 (2): 167-178
Marko-Varga G; Fehniger TE
Proteomics and disease - The challenges for technology and discovery
29
7316273 2004 MOLECULAR & CELLULAR PROTEOMICS 3 (8): 796-808
Loseva O; Engstrom Y
Analysis of signal-dependent changes in the proteome of Drosophila blood cells during an immune response
14
7415574 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (11): 2058-2070
Jordan IK; Marino-Ramirez L; Wolf YI; Koonin EV
Conservation and coevolution in the scale-free human gene coexpression network
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7514375 2004 MOLECULAR CELL 14 (5): 657-666
Adkins MW; Howar SR; Tyler JK
Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PH05 and PH08 genes
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7614476 2004 MOLECULAR CELL 14 (6): 813-823
Marles JA; Dahesh S; Haynes J; Andrews BJ; Davidson AR
Protein-protein interaction affinity plays a crucial role in controlling the Sho1p-mediated signal transduction pathway in yeast
03
7712877 2004 NATURE 430 (6995): 88-93
Han JDJ; Bertin N; Hao T; Goldberg DS; Berriz GF; et al.
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
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7812578 2004 NATURE 430 (6998): 460-463
Comas D; Petit F; Preat T
Drosophila long-term memory formation involves regulation of cathepsin activity
02
7912979 2004 NATURE 432 (7014): 231-235
Denli AM; Tops BBJ; Plasterk RHA; Ketting RF; Hannon GJ
Processing of primary microRNAs by the Microprocessor complex
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801880 2004 NATURE BIOTECHNOLOGY 22 (1): 43-44
Uetz P; Pankratz MJ
Protein interaction maps on the fly
12
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8122881 2004 NATURE BIOTECHNOLOGY 22 (10): 1317-1321
Aloy P; Russell RB
Ten thousand interactions for the molecular biologist
14
8213082 2004 NATURE BIOTECHNOLOGY 22 (12): 1583-1587
Berger I; Fitzgerald DJ; Richmond TJ
Baculovirus expression system for heterologous multiprotein complexes
02
831983 2004 NATURE CELL BIOLOGY 6 (2): 87-89
Hayden MS; Ghosh S
Keeping cartographers busy
00
841884 2004 NATURE GENETICS 36 (7): 664-664
Hoffmann R; Valencia A
A gene network for navigating the literature
17
8511585 2004 NATURE GENETICS 36 (10): 1059-1060
Lemos B; Meiklejohn CD; Hartl DL
Regulatory evolution across the protein interaction network
25
8616486 2004 NATURE NEUROSCIENCE 7 (5): 440-445
Choudhary J; Grant SGN
Proteomics in postgenomic neuroscience: the end of the beginning
05
871287 2004 NATURE REVIEWS GENETICS 5 (2): 84-85
Wilson N
Interacting maps
00
88110688 2004 NATURE REVIEWS GENETICS 5 (2): 101-U15
Barabasi AL; Oltvai ZN
Network biology: Understanding the cell's functional organization
24101
8915789 2004 NATURE REVIEWS GENETICS 5 (7): 545-551
Brunner HG; van Driel MA
From syndrome families to functional genomics
15
90111190 2004 NATURE REVIEWS GENETICS 5 (12): 911-922
Hay BA; Huh JR; Guo M
The genetics of cell death: Approaches, insights and opportunities in Drosophila
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
911291 2004 NATURE REVIEWS MOLECULAR CELL BIOLOGY 5 (2): 80-80
Wilson N
Proteomics - Interacting maps
00
9227692 2004 NEURON 43 (2): 193-205
Koh TW; Verstreken P; Bellen HJ
Dap160/intersectin acts as a stabilizing scaffold required for synaptic development and vesicle endocytosis
07
9312093 2004 NUCLEIC ACIDS RESEARCH 32: W69-W72
Tan SH; Zhang Z; Ng SK
ADVICE: Automated detection and validation of interaction by co-evolution
04
9412494 2004 NUCLEIC ACIDS RESEARCH 32: W83-W88
Kelley BP; Yuan BB; Lewitter F; Sharan R; Stockwell BR; et al.
PathBLAST: a tool for alignment of protein interaction networks
08
9515295 2004 NUCLEIC ACIDS RESEARCH 32 (18): 5379-5391
Guglielmi B; van Berkum NL; Klapholz B; Bijma T; Boube M; et al.
A high resolution protein interaction map of the yeast Mediator complex
16
9617596 2004 ONCOGENE 23 (27): 4793-4806
Qiu GH; Tan LKS; Loh KS; Lim CY; Srivastava G; et al.
The candidate tumor suppressor gene BLU, located at the commonly deleted region 3p21.3, is an E2F-regulated, stress-responsive gene and inactivated by both epigenetic and genetic mechanisms in nasopharyngeal carcinoma
02
9727797 2004 ONCOGENE 23 (51): 8359-8365
Dasgupta R; Perrimon N
Using RNAi to catch Drosophila genes in a web of interactions: insights into cancer research
05
9828998 2004 PHYSIOLOGY 19: 339-347
Sampogna RV; Nigam SK
Implications of gene networks for understanding resilience and vulnerability in the kidney branching program
00
9913399 2004 PLANT JOURNAL 38 (4): 664-672
Noh YS; Bizzell CM; Noh B; Schomburg FM; Amasino RM
EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis
03
100198100 2004 PLANT PHYSIOLOGY 135 (3): 1206-1220
Tzafrir I; Pena-Muralla R; Dickerman A; Berg M; Rogers R; et al.
Identification of genes required for embryo development in Arabidopsis
06

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