| Missing Links? Citation Matrix | Graphs | Glossary HistCite Guide About |
| Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
Fleischmann RD; Alland D; Eisen JA; Carpenter L; White O; Peterson J; DeBoy R; Dodson R; Gwinn M; Haft D; Hickey E; Kolonay JF; Nelson WC; Umayam LA; Ermolaeva M; Salzberg SL; Delcher A; Utterback T; Weidman J; Khouri H; Gill J; Mikula A; Bishai W; Jacobs WR; Venter JC; Fraser CM JOURNAL OF BACTERIOLOGY 184(19):5479-5490 |
Nodes: 68
Authors: 334,
Journals: 39,
Outer References: 2792
Collection span: 2002 - 2004
View: Overview. Sorted by year, source, volume, issue, page.
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 0 | 42 | 1 2002 JOURNAL OF BACTERIOLOGY 184(19):5479-5490 Fleischmann RD; Alland D; Eisen JA; Carpenter L; White O; Peterson J; DeBoy R; Dodson R; Gwinn M; Haft D; Hickey E; Kolonay JF; Nelson WC; Umayam LA; Ermolaeva M; Salzberg SL; Delcher A; Utterback T; Weidman J; Khouri H; Gill J; Mikula A; Bishai W; Jacobs WR; Venter JC; Fraser CM Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains | 67 | 67 |
| 2 | 1 | 8 | 2 2002 TRENDS IN MICROBIOLOGY 10(11):489-490 Thomson NR; Sebaihia M; Parkhill J Spot the difference... | 0 | 0 |
| 3 | 1 | 172 | 3 2003 ANNUAL REVIEW OF MICROBIOLOGY 57:641-676 Cosma CL; Sherman DR; Ramakrishnan L The secret lives of the pathogenic mycobacteria | 1 | 6 |
| 4 | 1 | 21 | 4 2003 APPLIED AND ENVIRONMENTAL MICROBIOLOGY 69(7):4337-4341 Vanitha JD; Venkatasubramani R; Dharmalingam K; Paramasivan CN Large-restriction-fragment polymorphism analysis of Mycobacterium chelonae and Mycobacterium terrae isolates | 0 | 0 |
| 5 | 1 | 54 | 5 2003 BMC MICROBIOLOGY 3 Berger BJ; Knodel MH Characterisation of methionine adenosyltransferase from Mycobacterium smegmatis and M-tuberculosis | 0 | 0 |
| 6 | 1 | 17 | 6 2003 CLINICAL AND EXPERIMENTAL IMMUNOLOGY 133(1):20-21 McShane H Susceptibility to tuberculosis - the importance of the pathogen as well as the host | 0 | 1 |
| 7 | 1 | 329 | 7 2003 CLINICAL MICROBIOLOGY REVIEWS 16(3):463-+ Smith I Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence | 2 | 8 |
| 8 | 2 | 50 | 8 2003 CURRENT OPINION IN STRUCTURAL BIOLOGY 13(6):658-664 Smith CV; Sacchettini JC Mycobacterium tuberculosis: a model system for structural genomics | 0 | 0 |
| 9 | 1 | 15 | 9 2003 CURRENT SCIENCE 85(2):185-187 Nandi T; Kannan K; Ramachandran S Species and strain-specific patterns of low-complexity proteins in Escherichia and Mycobacteria | 0 | 1 |
| 10 | 1 | 103 | 10 2003 ELECTROPHORESIS 24(19-20):3405-3420 Mattow J; Schaible UE; Schmidt F; Hagens K; Siejak R; Brestrich G; Haeselbarth G; Muller EC; Jungblut PR; Kaufmanni SHE Comparative proteome analysis of culture supernatant proteins from virulent Mycobacterium tuberculosis H37Rv and attenuated M-bovis BCG Copenhagen | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 11 | 1 | 14 | 11 2003 GENE 318:75-81 Flores J; Espitia C Differential expression of PE and PE_PGRS genes in Mycobacterium tuberculosis strains | 0 | 1 |
| 12 | 1 | 41 | 12 2003 INFECTION AND IMMUNITY 71(10):6004-6011 Manabe YC; Dannenberg AM; Tyagi SK; Hatem CL; Yoder M; Woolwine SC; Zook BC; Pitt MLM; Bishai WR Different strains of Mycobacterium tuberculosis cause various spectrums of disease in the rabbit model of tuberculosis | 2 | 3 |
| 13 | 1 | 18 | 13 2003 INFECTION AND IMMUNITY 71(12):7170-7172 Ando M; Yoshimatsu T; Ko C; Converse PJ; Bishai WR Deletion of Mycobacterium tuberculosis sigma factor E results in delayed time to death with bacterial persistence in the lungs of aerosol-infected mice | 2 | 3 |
| 14 | 1 | 43 | 14 2003 JOURNAL OF BACTERIOLOGY 185(9):2856-2866 Sampson SL; Warren RM; Richardson M; Victor TC; Jordaan AM; van der Spuy GD; van Helden PD IS6110-mediated deletion polymorphism in the direct repeat region of clinical isolates of Mycobacterium tuberculosis | 2 | 4 |
| 15 | 1 | 33 | 15 2003 JOURNAL OF BACTERIOLOGY 185(11):3392-3399 Alland D; Whittam TS; Murray MB; Cave MD; Hazbon MH; Dix K; Kokoris M; Duesterhoeft A; Eisen JA; Fraser CM; Fleischmann RD Modeling bacterial evolution with comparative-genome-based marker systems: Application to Mycobacterium tuberculosis evolution and pathogenesis | 0 | 5 |
| 16 | 1 | 65 | 16 2003 JOURNAL OF MOLECULAR BIOLOGY 325(4):697-709 Brannvall M; Pettersson BMF; Kirsebom LA Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination | 0 | 4 |
| 17 | 1 | 31 | 17 2003 LEPROSY REVIEW 74(1):11-17 Young D Prospects for molecular epidemiology of leprosy | 0 | 2 |
| 18 | 1 | 36 | 18 2003 MEDECINE ET MALADIES INFECTIEUSES 33:141S-146S Brosch R; Marmiesse M; Cole ST How genomics can contribute to the development of new therapeutic and preventive strategies in the fight against tuberculosis | 0 | 0 |
| 19 | 2 | 37 | 19 2003 MICROBIOLOGY-SGM 149:3203-3212 Collins DM; Kawakami RP; Buddle BM; Wards BJ; de Lisle GW Different susceptibility of two animal species infected with isogenic mutants of Mycobacterium bovis identifies phoT as having roles in tuberculosis virulence and phosphate transport | 0 | 1 |
| 20 | 2 | 35 | 20 2003 MICROBIOLOGY-SGM 149:3213-3220 Taylor GM; Stewart GR; Cooke M; Chaplin S; Ladva S; Kirkup J; Palmer S; Young DB Koch's Bacillus - a look at the first isolate of Mycobacterium tuberculosis from a modern perspective | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 21 | 1 | 210 | 21 2003 MOLECULAR MICROBIOLOGY 49(2):277-300 Casjens S Prophages and bacterial genomics: what have we learned so far? | 0 | 19 |
| 22 | 1 | 31 | 22 2003 NATURE BIOTECHNOLOGY 21(5):526-531 Ikeda H; Ishikawa J; Hanamoto A; Shinose M; Kikuchi H; Shiba T; Sakaki Y; Hattori M; Omura S Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis | 1 | 54 |
| 23 | 1 | 107 | 23 2003 PHYSIOLOGICAL GENOMICS 13(1):15-24 Barr MM Super models | 0 | 4 |
| 24 | 1 | 31 | 24 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(12):7213-7218 Lamichhane G; Zignol M; Blades NJ; Geiman DE; Dougherty A; Grosset J; Broman KW; Bishai WR A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis: Application to Mycobacterium tuberculosis | 2 | 8 |
| 25 | 1 | 43 | 25 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(13):7877-7882 Garnier T; Eiglmeier K; Camus JC; Medina N; Mansoor H; Pryor M; Duthoy S; Grondin S; Lacroix C; Monsempe C; Simon S; Harris B; Atkin R; Doggett J; Mayes R; Keating L; Wheeler PR; Parkhill J; Barrell BG; Cole ST; Gordon SV; Hewinson RG The complete genome sequence of Mycobacterium bovis | 14 | 31 |
| 26 | 1 | 30 | 26 2003 SCIENCE 300(5626):1706-1707 Eisen JA; Fraser CM Phylogenomics: Intersection of evolution and genomics | 0 | 10 |
| 27 | 1 | 13 | 27 2003 TUBERCULOSIS 83(1-3):201-207 Duncan K Progress in TB drug development and what is still needed | 0 | 0 |
| 28 | 1 | 19 | 28 2003 VACCINE 21(27-30):4270-4274 Mostowy S; Tsolaki AG; Small PM; Behr MA The in vitro evolution of BCG vaccines | 1 | 5 |
| 29 | 2 | 56 | 29 2004 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 48(1):143-150 Buriankova K; Doucet-Populaire F; Dorson O; Gondran A; Ghnassia JC; Weiser J; Pernodet JL Molecular basis of intrinsic macrolide resistance in the Mycobacterium tuberculosis complex | 0 | 2 |
| 30 | 1 | 41 | 30 2004 BMC BIOINFORMATICS 5 Denoeud F; Vergnaud G Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 31 | 1 | 89 | 31 2004 COMPARATIVE AND FUNCTIONAL GENOMICS 5(1):17-38 Shenoy AR; Svakumar K; Krupa A; Srinivasan N; Visweswariah SS A survey of nucleotide cyclases in Actinobacteria: unique domain organization and expansion of the class III cyclase family in Mycobacterium tuberculosis | 0 | 0 |
| 32 | 1 | 52 | 32 2004 CURRENT OPINION IN MICROBIOLOGY 7(3):314-320 Meinke A; Henics T; Nagy E Bacterial genomes pave the way to novel vaccines | 0 | 0 |
| 33 | 3 | 84 | 33 2004 CURRENT SCIENCE 86(1):82-92 Ramakrishnan L Using Mycobacterium marinum and its hosts to study tuberculosis | 0 | 1 |
| 34 | 1 | 57 | 34 2004 CURRENT SCIENCE 86(1):93-102 Tyagi JS; Sharma D Signal transduction systems of mycobacteria with special reference to M-tuberculosis | 0 | 0 |
| 35 | 1 | 20 | 35 2004 EUROPEAN JOURNAL OF BIOCHEMISTRY 271(12):2446-2451 Linder JU; Hammer A; Schultz JE The effect of HAMP domains on class IIIb adenylyl cyclases from Mycobacterium tuberculosis | 0 | 0 |
| 36 | 1 | 199 | 36 2004 FEMS MICROBIOLOGY REVIEWS 28(2):225-250 Dover LG; Cerdeno-Tarraga AM; Pallen MJ; Parkhill J; Besra GS Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae | 0 | 0 |
| 37 | 1 | 387 | 37 2004 FEMS MICROBIOLOGY REVIEWS 28(3):377-403 Gurtler V; Mayall BC; Seviour R Can whole genome analysis refine the taxonomy of the genus Rhodococcus? | 0 | 0 |
| 38 | 1 | 34 | 38 2004 GENOME BIOLOGY 5(2) Kurtz S; Phillippy A; Delcher AL; Smoot M; Shumway M; Antonescu C; Salzberg SL Versatile and open software for comparing large genomes | 0 | 2 |
| 39 | 3 | 63 | 39 2004 INFECTION AND IMMUNITY 72(3):1733-1745 Geiman DE; Kaushal D; Ko C; Tyagi S; Manabe YC; Schroeder BG; Fleischmann RD; Morrison NE; Converse PJ; Chen P; Bishai WR Attenuation of late-stage disease in mice infected by the Mycobacterium tuberculosis mutant lacking the SigF alternate sigma factor and identification of SigF-dependent genes by microarray analysis | 0 | 0 |
| 40 | 4 | 50 | 40 2004 JOURNAL OF BACTERIOLOGY 186(1):104-109 Mostowy S; Cousins D; Behr MA Genomic interrogation of the dassie bacillus reveals it as a unique RD1 mutant within the Mycobacterium tuberculosis complex | 1 | 3 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 41 | 1 | 80 | 41 2004 JOURNAL OF BACTERIOLOGY 186(2):503-517 Gaynor EC; Cawthraw S; Manning G; MacKichan JK; Falkow S; Newell DG The genome-sequenced variant of Campylobacter jejuni NCTC 11168 and the original clonal clinical isolate differ markedly in colonization, gene expression, and virulence-associated phenotypes | 0 | 3 |
| 42 | 2 | 72 | 42 2004 JOURNAL OF BACTERIOLOGY 186(4):895-902 Manganelli R; Proveddi R; Rodrigue S; Beaucher J; Gaudreau L; Smith I sigma factors and global gene regulation in Mycobacterium tuberculosis | 0 | 1 |
| 43 | 2 | 26 | 43 2004 JOURNAL OF BACTERIOLOGY 186(9):2856-2861 Stermann M; Sedlacek L; Maass S; Bange FC A promoter mutation causes differential nitrate reductase activity of Mycobacterium tuberculosis and Mycobacterium bovis | 0 | 0 |
| 44 | 1 | 35 | 44 2004 JOURNAL OF BACTERIOLOGY 186(16):5410-5417 Roberts EA; Clark A; McBeth S; Friedman RL Molecular characterization of the eis promoter of Mycobacterium tuberculosis | 0 | 0 |
| 45 | 1 | 31 | 45 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279(31):32385-32392 Rodriguez JM; Ruiz-Sala P; Ugarte M; Penalva MA Fungal metabolic model for type I 3-methylglutaconic aciduria | 0 | 0 |
| 46 | 2 | 16 | 46 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(1):372-377 Kotlowski R; Shamputa IC; El Aila NA; Sajduda A; Rigouts L; van Deun A; Portaels F PCR-Based genotyping of Mycobacterium tuberculosis with new GC-rich repeated sequences and IS6110 inverted repeats used as primers | 0 | 0 |
| 47 | 1 | 52 | 47 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(1):461-466 Tazi L; El Baghdadi J; Lesjean S; Locht C; Supply P; Tibayrenc M; Banuls AL Genetic diversity and population structure of Mycobacterium tuberculosis in Casablanca, a Moroccan city with high incidence of tuberculosis | 0 | 0 |
| 48 | 2 | 19 | 48 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(2):895-+ Sampson SL; Richardson M; Van Helden PD; Warren RM IS6110-mediated deletion polymorphism in isogenic strains of Mycobacterium tuberculosis | 0 | 0 |
| 49 | 2 | 33 | 49 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(5):1890-1896 Rajakumar K; Shafi J; Smith RJ; Stabler RA; Andrew PW; Modha D; Bryant G; Monk P; Hinds J; Butcher PD; Barer MR Use of genome level-informed PCR as a new Investigational approach for analysis of outbreak-associated Mycobacterium tuberculosis isolates | 0 | 0 |
| 50 | 1 | 46 | 50 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(6):2573-2580 Nguyen D; Brassard P; Menzies D; Thibert L; Warren R; Mostowy S; Behr M Genomic characterization of an endemic Mycobacterium tuberculosis strain: Evolutionary and epidemiologic implications | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 51 | 1 | 38 | 51 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(7):2913-2918 de la Salmoniere YOLG; Kim CC; Tsolaki AG; Pym AS; Siegrist MS; Small PM High-throughput method for detecting genomic-deletion polymorphisms | 0 | 0 |
| 52 | 2 | 30 | 52 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42(8):3538-3548 Otsuka Y; Parniewski P; Zwolska Z; Kai M; Fujino T; Kirikae F; Toyota E; Kudo K; Kuratsuji T; Kirikae T Characterization of a trinucleotide repeat sequence (CGG)(5) and potential use in restriction fragment length polymorphism typing of Mycobacterium tuberculosis | 0 | 0 |
| 53 | 1 | 48 | 53 2004 JOURNAL OF MICROBIOLOGICAL METHODS 56(1):49-62 van den Braak N; Simons G; Gorkink R; Reijans M; Eadie K; Kremers K; van Soolingen D; Savelkoul P; Verbrugh H; van Belkum A A new high-throughput AFLP approach for identification of new genetic polymorphism in the genome of the clonal microorganism Mycobacterium tuberculosis | 0 | 0 |
| 54 | 2 | 41 | 54 2004 MICROBIOLOGY-SGM 150:483-496 Marmiesse M; Brodin P; Buchrieser C; Gutierrez C; Simoes N; Vincent V; Glaser P; Cole ST; Brosch R Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex | 1 | 4 |
| 55 | 1 | 49 | 55 2004 MOLECULAR MICROBIOLOGY 51(6):1551-1562 Wu SP; Howard ST; Lakey DL; Kipnis A; Samten B; Safi H; Gruppo V; Wizel B; Shams H; Basaraba RJ; Orme IM; Barnes PF The principal sigma factor sigA mediates enhanced growth of Mycobacterium tuberculosis in vivo | 0 | 0 |
| 56 | 2 | 48 | 56 2004 MOLECULAR MICROBIOLOGY 52(1):25-38 Sun RG; Converse PJ; Ko C; Tyagi S; Morrison NE; Bishai WR Mycobacterium tuberculosis ECF sigma factor sigC is required for lethality in mice and for the conditional expression of a defined gene set | 0 | 1 |
| 57 | 2 | 35 | 57 2004 MOLECULAR MICROBIOLOGY 52(3):725-733 Delogu G; Pusceddu C; Bua A; Fadda G; Brennan MJ; Zanetti S Rv1818c-encoded PE_PGRS protein of Mycobacterium tuberculosis is surface exposed and influences bacterial cell structure | 0 | 0 |
| 58 | 1 | 30 | 58 2004 NATURE 428(6986):942-945 Plotkin JB; Dushoff J; Fraser HB Detecting selection using a single genome sequence of M-tuberculosis and P-falciparum | 0 | 0 |
| 59 | 2 | 30 | 59 2004 NATURE 431(7004):84-87 Reed MB; Domenech P; Manca C; Su H; Barczak AK; Kreiswirth BN; Kaplan G; Barry CE A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response | 0 | 0 |
| 60 | 3 | 140 | 60 2004 NATURE REVIEWS MICROBIOLOGY 2(6):483-495 Feil EJ Small change: Keeping pace with microevolution | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 61 | 1 | 34 | 61 2004 NUCLEIC ACIDS RESEARCH 32(1):17-24 Ben Zakour N; Gautier M; Andonov R; Lavenier D; Cochet MF; Veber P; Sorokin A; Le Loir Y GenoFrag: software to design primers optimized for whole genome scanning by long-range PCR amplification | 0 | 0 |
| 62 | 1 | 37 | 62 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(14):4865-4870 Tsolaki AG; Hirsh AE; DeRiemer K; Enciso JA; Wong MZ; Hannan M; de la Salmoniere YOL; Aman K; Kato-Maeda M; Small PM Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains | 0 | 3 |
| 63 | 1 | 40 | 63 2004 PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 271:S127-S130 Sorimachi K; Okayasu T Classification of eubacteria based on their complete genome: where does Mycoplasmataceae belong? | 0 | 0 |
| 64 | 1 | 30 | 64 2004 PROTEINS-STRUCTURE FUNCTION AND GENETICS 54(3):563-568 Zubrzycki IZ Analysis of the products of genes encomposed by the theoretically predicted pathogenicity islands of Mycobacterium tuberculosis and Mycobacterium bovis | 0 | 0 |
| 65 | 2 | 12 | 65 2004 SCANDINAVIAN JOURNAL OF IMMUNOLOGY 59(6):607-608 Wiker HG Unmatched sequences in public databases - Exemplified by tuberculin-active protein | 0 | 0 |
| 66 | 4 | 38 | 66 2004 TUBERCULOSIS 84(3-4):131-137 Butcher PD Microarrays for Mycobacterium tuberculosis | 0 | 0 |
| 67 | 3 | 33 | 67 2004 TUBERCULOSIS 84(3-4):256-262 Voskuil MI; Schnappinger D; Rutherford R; Liu Y; Schoolnik GK Regulation of the Mycobacterium tuberculosis PE/PPE genes | 0 | 0 |
| 68 | 1 | 25 | 68 2004 TUBERCULOSIS 84(5):317-326 Petrelli D; Sharma MK; Wolfe J; Al-Azem A; Hershfield E; Kabani A Strain-related virulence of the dominant Mycobacterium tuberculosis strain in the Canadian province of Manitoba | 0 | 0 |
Generated by: HistCite(Vlad).
Version: 2004.08.24