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Nodes: 140,
Authors: 633,
Journals: 56,
Outer References: 5335,
Words: 623
Collection span: 2003 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 1 | 30 | 1 2003 BIOINFORMATICS 19 (18): 2369-2380 Wang T; Stormo GD Combining phylogenetic data with co-regulated genes to identify regulatory motifs | 3 | 13 |
| 2 | 1 | 73 | 2 2003 CELL 115 (4): 389-399 Tsong AE; Miller MG; Raisner RM; Johnson AD Evolution of a combinatorial transcriptional circuit: A case study in yeasts | 2 | 12 |
| 3 | 1 | 69 | 3 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 217-225 Zhang MQ Prediction, annotation, and analysis of human promoters | 0 | 1 |
| 4 | 3 | 96 | 4 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 431-443 Jorgensen P; Breitkreutz BJ; Breitkreutz K; Stark C; Liu G; et al. Harvesting the genome's bounty: Integrative genomics | 0 | 0 |
| 5 | 1 | 61 | 5 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 611-616 Li H; Wang W Dissecting the transcription networks of a cell using computational genomics | 0 | 3 |
| 6 | 1 | 56 | 6 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 617-622 Swanson WJ Adaptive evolution of genes and gene families | 0 | 3 |
| 7 | 1 | 58 | 7 2003 EMBO JOURNAL 22 (21): 5951-5961 Perez-Martinez X; Broadley SA; Fox TD Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p | 0 | 2 |
| 8 | 1 | 54 | 8 2003 GENES & DEVELOPMENT 17 (19): 2384-2395 Stellwagen AE; Haimberger ZW; Veatch JR; Gottschling DE Ku interacts with telomerase RNA to promote telomere addition at native and broken chromosome ends | 2 | 24 |
| 9 | 1 | 26 | 9 2003 JOURNAL OF BACTERIOLOGY 185 (24): 7031-7035 Nielsen J It is all about metabolic fluxes | 0 | 3 |
| 10 | 1 | 45 | 10 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (42): 41519-41527 Oishi K; Miyazaki K; Kadota K; Kikuno R; Nagase T; et al. Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes | 0 | 14 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 11 | 1 | 46 | 11 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (51): 51566-51576 Sampath V; Rekha N; Srinivasan N; Sadhale P The conserved and non-conserved regions of Rpb4 are involved in multiple phenotypes in Saccharomyces cerevisiae | 0 | 1 |
| 12 | 1 | 72 | 12 2003 JOURNAL OF CELL BIOLOGY 162 (7): 1211-1221 Kilmartin JV Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication | 0 | 16 |
| 13 | 1 | 19 | 13 2003 JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 6 (1): 19-28 De Hertogh B; Talla E; Tekaia F; Beyne E; Sherman D; et al. Novel transporters from hemiascomycete yeasts | 0 | 0 |
| 14 | 1 | 101 | 14 2003 MOLECULAR BIOLOGY OF THE CELL 14 (12): 4931-4946 Nekrasov VS; Smith MA; Peak-Chew S; Kilmartin JV Interactions between centromere complexes in Saccharomyces cerevisiae | 1 | 9 |
| 15 | 3 | 56 | 15 2003 MOLECULAR CELL 12 (6): 1353-1365 Hazbun TR; Malmstrom L; Anderson S; Graczyk BJ; Fox B; et al. Assigning function to yeast proteins by integration of technologies | 1 | 23 |
| 16 | 2 | 48 | 16 2003 NATURE 425 (6959): 686-691 Huh WK; Falvo JV; Gerke LC; Carroll AS; Howson RW; et al. Global analysis of protein localization in budding yeast | 11 | 202 |
| 17 | 2 | 29 | 17 2003 NATURE 425 (6959): 737-741 Ghaemmaghami S; Huh W; Bower K; Howson RW; Belle A; et al. Global analysis of protein expression in yeast | 11 | 138 |
| 18 | 1 | 51 | 18 2003 NATURE 425 (6960): 798-804 Rokas A; Williams BL; King N; Carroll SB Genome-scale approaches to resolving incongruence in molecular phylogenies | 5 | 57 |
| 19 | 2 | 8 | 19 2003 NATURE 426 (6968): 750-751 Dennis C Genomics - Compare and contrast | 0 | 0 |
| 20 | 1 | 67 | 20 2003 NUCLEIC ACIDS RESEARCH 31 (23): 6891-6903 Liu JJ; Tan K; Stormo GD Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 21 | 1 | 33 | 21 2003 PLOS BIOLOGY 1 (2): 156-160 Hardison RC Comparative genomics | 0 | 1 |
| 22 | 1 | 118 | 22 2003 PLOS BIOLOGY 1 (2): 166-+ Stein LD; Bao ZR; Blasiar D; Blumenthal T; Brent MR; et al. The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics | 3 | 23 |
| 23 | 0 | 34 | 23 2003 SCIENCE 301 (5629): 71-76 Cliften P; Sudarsanam P; Desikan A; Fulton L; Fulton B; et al. Finding functional features in Saccharomyces genomes by phylogenetic footprinting | 139 | 139 |
| 24 | 1 | 6 | 24 2003 SCIENCE 302 (5647): 997-+ Johnston M; Stormo GD Heirlooms in the attic | 0 | 1 |
| 25 | 1 | 24 | 25 2004 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3240: 326-337 Sundararajan M; Brudno M; Small K; Sidow A; Batzoglou S Chaining algorithms for alignment of draft sequence | 0 | 0 |
| 26 | 1 | 40 | 26 2004 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 31 (2): S72-S75 [Anon] Identifying regulatory networks - Lessons from yeast to humans | 0 | 0 |
| 27 | 3 | 193 | 27 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56 Miller W; Makova KD; Nekrutenko A; Hardison RC Comparative genomics | 0 | 2 |
| 28 | 1 | 173 | 28 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477 Borevitz JO; Ecker JR Plant genomics: The third wave | 0 | 1 |
| 29 | 2 | 48 | 29 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 321 (3): 707-715 Boutros PC; Moffat ID; Franc MA; Tijet N; Tuomisto J; et al. Dioxin-responsive AHRE-II gene battery: identification by phylogenetic footprinting | 0 | 1 |
| 30 | 2 | 159 | 30 2004 BIOCHEMICAL JOURNAL 381: 1-12 Wei GH; Liu DP; Liang CC Charting gene regulatory networks: strategies, challenges and perspectives | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 31 | 1 | 21 | 31 2004 BIOINFORMATICS 20 (16): 2553-2561 Tadesse MG; Vannucci M; Lio P Identification of DNA regulatory motifs using Bayesian variable selection | 0 | 0 |
| 32 | 1 | 49 | 32 2004 BIOINFORMATICS 20 (16): 2738-2750 Grad YH; Roth FP; Halfon MS; Church GM Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura | 0 | 0 |
| 33 | 1 | 43 | 33 2004 BMC GENOMICS 5: Art. No. 59 Nagaraj VH; O'Flanagan RA; Bruning AR; Mathias JR; Vershon AK; et al. Combined analysis of expression data and transcription factor binding sites in the yeast genome | 0 | 3 |
| 34 | 1 | 15 | 34 2004 BRIEFINGS IN BIOINFORMATICS 5 (1): 9-22 Dwight SS; Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; et al. Saccharomyces genome database: Underlying principles and organisation | 1 | 3 |
| 35 | 2 | 113 | 35 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26 (1): 19-30 Hsiang T; Baillie DL Recent progress, developments, and issues in comparative fungal genomics | 0 | 1 |
| 36 | 1 | 57 | 36 2004 CELL 116 (5): 699-709 Basehoar AD; Zanton SJ; Pugh BF Identification and distinct regulation of yeast TATA box-containing genes | 2 | 14 |
| 37 | 4 | 62 | 37 2004 CELL 118 (1): 31-44 Mnaimneh S; Davierwala AP; Haynes J; Moffat J; Peng WT; et al. Exploration of essential gene functions via titratable promoter alleles | 2 | 12 |
| 38 | 1 | 49 | 38 2004 CELL 119 (7): 969-979 Martin DE; Soulard A; Hall MN TOR regulates ribosomal protein gene expression via PKA and the forkhead transcription factor FHL1 | 0 | 1 |
| 39 | 1 | 45 | 39 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61 (10): 1208-1220 Creutz CE; Snyder SL; Schulz TA Characterization of the yeast tricalbins: membrane-bound multi-C2-domain proteins that form complexes involved in membrane trafficking | 0 | 0 |
| 40 | 2 | 20 | 40 2004 CURRENT BIOLOGY 14 (10): R392-R394 Wolfe K Evolutionary genomics: Yeasts accelerate beyond BLAST | 0 | 1 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 41 | 2 | 19 | 41 2004 CURRENT BIOLOGY 14 (14): R565-R567 Lustig AJ Telomerase RNA: A flexible RNA scaffold for telomerase biosynthesis | 0 | 0 |
| 42 | 1 | 37 | 42 2004 CURRENT GENETICS 45 (3): 121-128 Roth S; Kumme J; Schuller HJ Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae | 0 | 1 |
| 43 | 1 | 60 | 43 2004 CURRENT OPINION IN BIOTECHNOLOGY 15 (1): 70-77 Herrgard MJ; Covert MW; Palsson BO Reconstruction of microbial transcriptional regulatory networks | 1 | 9 |
| 44 | 4 | 111 | 44 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 602-613 Tyers M Cell cycle goes global | 0 | 0 |
| 45 | 1 | 40 | 45 2004 CURRENT OPINION IN MICROBIOLOGY 7 (4): 382-387 Llinas M; DeRisi JL Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis | 0 | 0 |
| 46 | 5 | 53 | 46 2004 CURRENT OPINION IN MICROBIOLOGY 7 (5): 546-554 Hughes TR; Robinson MD; Mitsakakis N; Johnston M The promise of functional genomics: completing the encyclopedia of a cell | 0 | 1 |
| 47 | 4 | 53 | 47 2004 CURRENT OPINION IN MICROBIOLOGY 7 (6): 638-646 Chua G; Robinson MD; Morris Q; Hughes TR Transcriptional networks: reverse-engineering gene regulation on a global scale | 0 | 0 |
| 48 | 1 | 43 | 48 2004 EMBO JOURNAL 23 (5): 1123-1132 Bird AJ; Blankman E; Stillman DJ; Eide DJ; Winge DR The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2 | 0 | 1 |
| 49 | 1 | 72 | 49 2004 EUKARYOTIC CELL 3 (1): 221-231 Kaniak A; Xue ZX; Macool D; Kim JH; Johnston M Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae | 0 | 5 |
| 50 | 2 | 41 | 50 2004 EUKARYOTIC CELL 3 (2): 318-330 Gulshan K; Rovinsky SA; Moye-Rowley WS YBP1 and its homologue YBP2/YBH1 influence oxidative-stress tolerance by nonidentical mechanisms in Saccharomyces cerevisiae | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 51 | 1 | 78 | 51 2004 EUKARYOTIC CELL 3 (2): 339-347 Stebbins JL; Triezenberg SJ Identification, mutational analysis, and coactivator requirements of two distinct transcriptional activation domains of the Saccharomyces cerevisiae Hap4 protein | 0 | 1 |
| 52 | 1 | 73 | 52 2004 EUKARYOTIC CELL 3 (5): 1088-1100 Kupfer DM; Drabenstot SD; Buchanan KL; Lai HS; Zhu H; et al. Introns and splicing elements of five diverse fungi | 0 | 0 |
| 53 | 1 | 236 | 53 2004 FEMS MICROBIOLOGY REVIEWS 28 (5): 581-601 Dudasova Z; Dudas A; Chovanec M Non-homologous end-joining factors of Saccharomyces cerevisiae | 0 | 0 |
| 54 | 1 | 50 | 54 2004 FEMS YEAST RESEARCH 4 (8): 821-832 Maciaszczyk E; Wysocki R; Golik P; Lazowska J; Ulaszewski S Arsenical resistance genes in Saccharomyces douglasii and other yeast species undergo rapid evolution involving genomic rearrangements and duplications | 0 | 0 |
| 55 | 1 | 38 | 55 2004 FUNGAL GENETICS AND BIOLOGY 41 (3): 285-292 Nowrousian M; Wurtz C; Poggeler S; Kuck U Comparative sequence analysis of Sordaria macrospora and Neurospora crassa as a means to improve genome annotation | 0 | 1 |
| 56 | 1 | 57 | 56 2004 GENE 335: 1-17 Lafontaine I; Fischer G; Talla E; Dujon B Gene relics in the genorne of the yeast Saccharomyces cerevisiae | 0 | 1 |
| 57 | 1 | 57 | 57 2004 GENES & DEVELOPMENT 18 (9): 981-991 Wilmes GM; Archambault V; Austin RJ; Jacobson MD; Bell SP; et al. Interaction of the S-phase cyclin Clb5 with an 'RXL' docking sequence in the initiator protein Orc6 provides an origin-localized replication control switch | 1 | 9 |
| 58 | 1 | 56 | 58 2004 GENETICS 166 (4): 1727-1739 Abdel-Sater F; Iraqui I; Urrestarazu A; Andre B The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae | 0 | 2 |
| 59 | 1 | 64 | 59 2004 GENETICS 167 (1): 65-75 Williams EH; Perez-Martinez X; Fox TD MrpL36p, a highly diverged L31 ribosomal protein homolog with additional functional domains in Saccharomyces cerevisiae mitochondria | 1 | 1 |
| 60 | 1 | 38 | 60 2004 GENOME BIOLOGY 5 (1): Art. No. R2 Hurowitz EH; Brown PO Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 61 | 1 | 125 | 61 2004 GENOME BIOLOGY 5 (1): Art. No. 201 Bulyk ML Computational prediction of transcription-factor binding site locations | 0 | 1 |
| 62 | 2 | 15 | 62 2004 GENOME BIOLOGY 5 (2): Art. No. 206 Scannell DR; Wolfe K Rewiring the transcriptional regulatory circuits of cells | 0 | 0 |
| 63 | 1 | 84 | 63 2004 GENOME BIOLOGY 5 (4): Art. No. R22 Breier AM; Chatterji S; Cozzarelli NR Prediction of Saccharomyces cerevisiae replication origins | 0 | 7 |
| 64 | 1 | 54 | 64 2004 GENOME BIOLOGY 5 (5): Art. No. R33 Simonis N; van Helden J; Cohen GN; Wodak SJ Transcriptional regulation of protein complexes in yeast | 0 | 2 |
| 65 | 2 | 51 | 65 2004 GENOME BIOLOGY 5 (12): Art. No. R98 Moses AM; Chiang DY; Pollard DA; Iyer VN; Eisen MB MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model | 0 | 0 |
| 66 | 1 | 35 | 66 2004 GENOME RESEARCH 14 (1): 99-108 Pritsker M; Liu YC; Beer MA; Tavazoie S Whole-genome discovery of transcription factor binding sites by network-level conservation | 5 | 9 |
| 67 | 1 | 32 | 67 2004 GENOME RESEARCH 14 (3): 451-458 Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S Eukaryotic regulatory element conservation analysis and identification using comparative genomics | 0 | 6 |
| 68 | 1 | 15 | 68 2004 GENOME RESEARCH 14 (4): 716-720 Chakrabarti K; Pachter L Visualization of multiple genome annotations and alignments with the K-BROWSER | 0 | 4 |
| 69 | 1 | 17 | 69 2004 GENOME RESEARCH 14 (5): 829-834 Tanay A; Gat-Viks I; Shamir R A global view of the selection forces in the evolution of yeast cis-regulation | 1 | 1 |
| 70 | 2 | 59 | 70 2004 GENOME RESEARCH 14 (6): 1043-1051 Edwards-Ingram LC; Gent ME; Hoyle DC; Hayes A; Stateva LI; et al. Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 71 | 1 | 32 | 71 2004 GENOME RESEARCH 14 (8): 1603-1609 Magrini V; Warren WC; Wallis J; Goldman WE; Xu J; et al. Fosmid-based physical mapping of the Histoplasma capsulatum genorne | 0 | 2 |
| 72 | 1 | 18 | 72 2004 GENOME RESEARCH 14 (10B): 2064-2069 Lamesch P; Milstein S; Hao T; Rosenberg J; Li N; et al. C-elegans ORFeome version 3.1: Increasing the coverage of 2064 ORFeome resources with improved gene predictions | 0 | 2 |
| 73 | 3 | 196 | 73 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37 (1): 93-106 Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 1 | 7 |
| 74 | 1 | 39 | 74 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (2): 1191-1196 Sullivan M; Hornig NCD; Porstmann T; Uhlmann F Studies on substrate recognition by the budding yeast separase | 0 | 2 |
| 75 | 1 | 45 | 75 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (16): 15728-15733 Ellis TP; Helfenbein KG; Tzagoloff A; Dieckmann CL Aep3p stabilizes the mitochondrial bicistronic mRNA encoding subunits 6 and 8 of the H+-translocating ATP synthase of Saccharomyces cerevisiae | 0 | 4 |
| 76 | 2 | 59 | 76 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (48): 50243-50249 Burri L; Vascotto K; Fredersdorf S; Tiedt R; Hall MN; et al. Zim17, a novel zinc finger protein essential for protein import into mitochondria | 0 | 2 |
| 77 | 1 | 50 | 77 2004 JOURNAL OF CELL SCIENCE 117 (4): 601-608 Blankley RT; Lydall D A domain of Rad9 specifically required for activation of Chk1 in budding yeast | 0 | 2 |
| 78 | 1 | 38 | 78 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (1): 135-143 Hess D; Liu BS; Roan NR; Sternglanz R; Winston F Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21 | 0 | 1 |
| 79 | 1 | 40 | 79 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (10): 4118-4127 Moqtaderi Z; Struhl K Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes | 0 | 7 |
| 80 | 2 | 63 | 80 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (17): 7720-7736 Chappell AS; Lundblad V Structural elements required for association of the Saccharomyces cerevisiae telomerase RNA with the Est2 reverse transcriptase | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 81 | 1 | 83 | 81 2004 MOLECULAR BIOLOGY OF THE CELL 15 (4): 1904-1917 Mackin NA; Sousou TJ; Erdman SE The PXL1 gene of Saccharomyces cerevisiae encodes a paxillin-like protein functioning in polarized cell growth | 0 | 2 |
| 82 | 1 | 60 | 82 2004 MOLECULAR MICROBIOLOGY 52 (5): 1271-1280 Gardenour KR; Levy J; Lopes JM Identification of novel dominant INO2(c) mutants with an Opi(-) phenotype | 0 | 0 |
| 83 | 3 | 61 | 83 2004 MOLECULAR MICROBIOLOGY 53 (2): 381-389 Piskur J; Langkjaer RB Yeast genome sequencing: the power of comparative genomics | 1 | 1 |
| 84 | 1 | 30 | 84 2004 NATURE 429 (6991): 571-574 Martens JA; Laprade L; Winston F Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene | 1 | 14 |
| 85 | 2 | 10 | 85 2004 NATURE 430 (6995): 25-26 Goffeau A Evolutionary genomics - Seeing double | 0 | 0 |
| 86 | 2 | 34 | 86 2004 NATURE 430 (6995): 35-44 Dujon B; Sherman D; Fischer G; Durrens P; Casaregola S; et al. Genome evolution in yeasts | 7 | 24 |
| 87 | 3 | 30 | 87 2004 NATURE 431 (7004): 99-104 Harbison CT; Gordon DB; Lee TI; Rinaldi NJ; Macisaac KD; et al. Transcriptional regulatory code of a eukaryotic genome | 2 | 12 |
| 88 | 1 | 71 | 88 2004 NATURE 431 (7011): 931-945 Collins FS; Lander ES; Rogers J; Waterston RH Finishing the euchromatic sequence of the human genome | 0 | 22 |
| 89 | 2 | 49 | 89 2004 NATURE GENETICS 36 (12): 1331-1339 Mukherjee S; Berger MF; Jona G; Wang XS; Muzzey D; et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays | 0 | 1 |
| 90 | 2 | 102 | 90 2004 NATURE REVIEWS GENETICS 5 (3): 190-201 Steinmetz LM; Davis RW Maximizing the potential of functional genomics | 0 | 9 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 91 | 1 | 98 | 91 2004 NATURE REVIEWS GENETICS 5 (4): 276-287 Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 3 | 20 |
| 92 | 2 | 3 | 92 2004 NATURE REVIEWS MICROBIOLOGY 2 (11): 856-857 Pain A; Bentley S; Parkhill J Eukaryotes: not beyond compare | 0 | 0 |
| 93 | 1 | 10 | 93 2004 NUCLEIC ACIDS RESEARCH 32: D311-D314 Christie KR; Weng S; Balakrishnan R; Costanzo MC; Dolinski K; et al. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms | 0 | 31 |
| 94 | 1 | 14 | 94 2004 NUCLEIC ACIDS RESEARCH 32: D315-D318 Sherman D; Durrens P; Beyne E; Nikolski M; Souciet JL Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts | 0 | 7 |
| 95 | 1 | 36 | 95 2004 NUCLEIC ACIDS RESEARCH 32 (2): 407-414 Jeong HS; Backlund PS; Chen HC; Karavanov AA; Crouch RJ RNase H2 of Saccharomyces cerevisiae is a complex of three proteins | 0 | 2 |
| 96 | 1 | 31 | 96 2004 NUCLEIC ACIDS RESEARCH 32 (3): 949-958 Marino-Ramirez L; Spouge JL; Kanga GC; Landsman D Statistical analysis of over-represented words in human promoter sequences | 0 | 4 |
| 97 | 1 | 60 | 97 2004 NUCLEIC ACIDS RESEARCH 32 (5): 1774-1782 Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals | 0 | 2 |
| 98 | 1 | 49 | 98 2004 NUCLEIC ACIDS RESEARCH 32 (7): 2069-2078 Leh-Louis V; Wirth B; Despons L; Wain-Hobson S; Potier S; et al. Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny | 0 | 1 |
| 99 | 1 | 48 | 99 2004 NUCLEIC ACIDS RESEARCH 32 (14): 4281-4296 Schattner P; Decatur WA; Davis CA; Ares M; Fournier MJ; et al. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome | 0 | 0 |
| 100 | 1 | 37 | 100 2004 NUCLEIC ACIDS RESEARCH 32 (21): 6212-6217 Tang SS; Tan SL; Ramadoss SK; Kumar AP; Tang MHE; et al. Computational method for discovery of estrogen responsive genes | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 101 | 1 | 55 | 101 2004 NUCLEIC ACIDS RESEARCH 32 (22): 6469-6478 Mathias JR; Hanlon SE; O'Flanagan RA; Sengupta AM; Vershon AK Repression of the yeast HO gene by the MAT alpha 2 and MATa1 homeodomain proteins | 0 | 0 |
| 102 | 1 | 69 | 102 2004 PLOS BIOLOGY 2 (3): 342-354 Gerber AP; Herschlag D; Brown PO Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast | 0 | 2 |
| 103 | 1 | 63 | 103 2004 PLOS BIOLOGY 2 (8): 1208-1223 Patil CK; Li H; Walter P Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response | 0 | 0 |
| 104 | 3 | 124 | 104 2004 PLOS BIOLOGY 2 (12): 2202-2219 Gasch AP; Moses AM; Chiang DY; Fraser HB; Berardini M; et al. Conservation and evolution of cis-regulatory systems in ascomycete fungi | 0 | 0 |
| 105 | 1 | 50 | 105 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (2): 434-439 Inada M; Guthrie C Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs | 0 | 7 |
| 106 | 1 | 40 | 106 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (6): 1572-1577 Moriya H; Johnston M Glucose sensing and signaling in Saccharomyces cerevisiae through the Rgt2 glucose sensor and casein kinase I | 0 | 7 |
| 107 | 2 | 51 | 107 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (6): 1632-1637 Butler G; Kenny C; Fagan A; Kurischko C; Gaillardin C; et al. Evolution of the MAT locus and its Ho endonuclease in yeast species | 2 | 6 |
| 108 | 1 | 35 | 108 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (24): 9033-9038 Fraser HB; Hirsh AE; Wall DP; Eisen MB Coevolution of gene expression among interacting proteins | 0 | 5 |
| 109 | 3 | 45 | 109 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14144-14149 Hittinger CT; Rokas A; Carroll SB Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts | 1 | 2 |
| 110 | 1 | 20 | 110 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (49): 17156-17161 Iwama H; Gojobori T Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 111 | 1 | 38 | 111 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (50): 17422-17427 Sidoux-Walter F; Pettersson N; Hohmann S The Saccharomyces cerevisiae aquaporin Aqy1 is involved in sporulation | 0 | 0 |
| 112 | 1 | 31 | 112 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (52): 18069-18074 Galgoczy DJ; Cassidy-Stone A; Llinas M; O'Rourke SM; Herskowitz I; et al. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae | 0 | 1 |
| 113 | 2 | 47 | 113 2004 PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 271 (1545): 1225-1234 Promislow DEL Protein networks, pleiotropy and the evolution of senescence | 1 | 3 |
| 114 | 1 | 51 | 114 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10 (1): 75-89 Van Nues RW; Brown JD Saccharomyces SRP RNA secondary structures: A conserved S-domain and extended Alu-domain | 0 | 1 |
| 115 | 1 | 35 | 115 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10 (7): 1005-1018 Itoh H; Washio T; Tomita M Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes | 0 | 2 |
| 116 | 2 | 26 | 116 2004 SCIENCE 306 (5700): 1367-1370 Gao LZ; Innan H Very low gene duplication rate in the yeast genome | 0 | 0 |
| 117 | 2 | 8 | 117 2004 SCIENTIST 18 (12): 28-29 Secko D Computing gene regulation | 0 | 0 |
| 118 | 2 | 74 | 118 2004 TRENDS IN PLANT SCIENCE 9 (12): 591-596 Chen WQJ; Zhu T Networks of transcription factors with roles in environmental stress response | 0 | 0 |
| 119 | 1 | 31 | 119 2004 YEAST 21 (14): 1195-1203 Talarek N; Louis EJ; Cullin C; Aigle M Developing methods and strains for genetic studies in the Saccharomyces bayanus var. uvarum species | 0 | 0 |
| 120 | 1 | 32 | 120 2005 BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 1748 (2): 213-221 Elfstrom LT; Widersten M The Saccharomyces cerevisiae ORF YNR064c protein has characteristics of an 'orphaned' epoxide hydrolase | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 121 | 2 | 69 | 121 2005 BIOINFORMATICS 21 (3): 338-348 Ferrarini L; Bertelli L; Feala J; McCulloch AD; Paternostro G A more efficient search strategy for aging genes based on connectivity | 0 | 0 |
| 122 | 4 | 40 | 122 2005 CELL CYCLE 4 (1): 125-130 Archambault V; Buchler NE; Wilmes GM; Jacobson MD; Cross FR Two-faced Cyclins with eyes on the targets | 0 | 1 |
| 123 | 3 | 21 | 123 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (1-2): 2-16 Howson R; Huh WK; Ghaemmaghami S; Falvo JV; Bower K; et al. Construction, verification and experimental use of two epitope-tagged collections budding yeast strains | 0 | 0 |
| 124 | 2 | 68 | 124 2005 EUKARYOTIC CELL 4 (2): 337-345 Williams EH; Bsat N; Bonnefoy N; Butler CA; Fox TD Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs | 0 | 0 |
| 125 | 1 | 34 | 125 2005 FEMS YEAST RESEARCH 5 (4-5): 471-483 Nguyen HV; Gaillardin C Evolutionary relationships between the former species Saccharomyces uvarum and the hybrids Saccharomyces bayanus and Saccharomyces pastorianus; reinstatement of Saccharomyces uvarum (Beijerinck) as a distinct species | 0 | 0 |
| 126 | 2 | 91 | 126 2005 GENOME BIOLOGY 6 (2): Art. No. R18 Elemento O; Tavazoie S Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach | 0 | 0 |
| 127 | 4 | 27 | 127 2005 GENOME RESEARCH 15 (2): 205-213 Chin CS; Chuang JH; Li H Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence | 0 | 0 |
| 128 | 3 | 52 | 128 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (7): 5169-5177 Novoseler M; Hershkovits G; Katcoff DJ Functional domains of the yeast chromatin protein Sin1p/Spt2p can bind four-way junction and crossing DNA structures | 0 | 0 |
| 129 | 1 | 52 | 129 2005 JOURNAL OF CELL BIOLOGY 168 (1): 103-115 Dimmer KS; Jakobs S; Vogel F; Altmann K; Westermann B Mdm31 and Mdm32 are inner membrane proteins required for maintenance of mitochondrial shape and stability of mitochondrial DNA nucleoids in yeast | 0 | 0 |
| 130 | 1 | 46 | 130 2005 JOURNAL OF CELL SCIENCE 118 (4): 723-732 Wang M; Johnsson N Protein kinase CK2 phosphorylates Sec63p to stimulate the assembly of the endoplasmic reticulum protein translocation apparatus | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 131 | 1 | 40 | 131 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (5): 1577-1585 Roth KM; Wolf MK; Rossi M; Butler JS The nuclear exosome contributes to autogenous control of NAB2 mRNA levels | 0 | 0 |
| 132 | 1 | 37 | 132 2005 NATURE 434 (7031): 338-345 Xie XH; Lu J; Kulbokas EJ; Golub TR; Mootha V; et al. Systematic discovery of regulatory motifs in human promoters and 3 ' UTRs by comparison of several mammals | 0 | 0 |
| 133 | 2 | 25 | 133 2005 NUCLEIC ACIDS RESEARCH 33: D348-D352 Hermida L; Brachat S; Voegeli S; Philippsen P; Primig M The Ashbya Genome Database (AGD) - a tool for the yeast community and genome biologists | 0 | 0 |
| 134 | 2 | 31 | 134 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368 Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al. CYGD: the comprehensive Yeast Genome Database | 0 | 0 |
| 135 | 2 | 9 | 135 2005 NUCLEIC ACIDS RESEARCH 33: D374-D377 Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; Dwight SS; et al. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD) | 0 | 0 |
| 136 | 1 | 64 | 136 2005 PLANT CELL 17 (3): 676-690 de Meaux J; Goebel U; Pop A; Mitchell-Olds T Allele-specific assay reveals functional variation in the chalcone synthase promoter of Arabidiopsis thaliana that is compatible with neutral evolution | 0 | 0 |
| 137 | 2 | 30 | 137 2005 PLOS BIOLOGY 3 (1): 95-102 Eddy SR A model of the statistical power of comparative genome sequence analysis | 0 | 1 |
| 138 | 1 | 49 | 138 2005 REPRODUCTION 129 (1): 1-7 Wrobel G; Primig M Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction | 0 | 0 |
| 139 | 3 | 63 | 139 2005 YEAST 22 (2): 141-155 Tomishige N; Noda Y; Adachi H; Shimoi H; Yoda K SKG1, a suppressor gene of synthetic lethality of kex2 Delta gas1 Delta mutations, encodes a novel membrane protein that affects cell wall composition | 0 | 0 |
| 140 | 1 | 48 | 140 2005 YEAST 22 (3): 177-192 Liti G; Peruffo A; James SA; Roberts IN; Louis EJ Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex | 0 | 0 |
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