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The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu JC, DeRisi JL PLOS BIOLOGY 1 (1): 85-100 OCT 2003 and the citing papers |
Nodes: 78,
Authors: 357,
Journals: 38,
Outer References: 2993,
Words: 358
Collection span: 2003 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
| # | LCR | NCR | Node / Date / Journal / Author | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 1 | 83 | 1 2003 CELL 115 (7): 771-785 Aravind L; Iyer LM; Wellems TE; Miller LH Plasmodium biology: Genomic gleanings | 9 | 33 |
| 2 | 0 | 67 | 2 2003 PLOS BIOLOGY 1 (1): 85-100 Bozdech Z; Llinas M; Pulliam BL; Wong ED; Zhu JC; et al. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum | 77 | 77 |
| 3 | 1 | 170 | 3 2004 ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY 20: 29-59 Kappe SHI; Buscaglia CA; Nussenzweig V Plasmodium sporozoite molecular cell biology | 0 | 3 |
| 4 | 1 | 19 | 4 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 321 (1): 197-201 Klokouzas A; Tiffert T; van Schalkwyk D; Wu CP; van Veen HW; et al. Plasmodium falciparum expresses a multidrug resistance-associated protein | 1 | 2 |
| 5 | 2 | 54 | 5 2004 BIOCHEMICAL JOURNAL 381: 803-811 Rasoloson D; Shi LR; Chong CR; Kafsack BF; Sullivan DJ Copper pathways in Plasmodium faliciparum infected erythrocytes indicate an efflux role for the copper P-ATPase | 1 | 1 |
| 6 | 1 | 80 | 6 2004 BIOCHEMICAL JOURNAL 383: 401-412 Surolia A; Ramya TNC; Ramya V; Surolia N FAS't inhibition of malaria | 0 | 2 |
| 7 | 1 | 51 | 7 2004 BMC MOLECULAR BIOLOGY 5: Art. No. 6 Kumar R; Musiyenko A; Oldenburg A; Adams B; Barik S Post-translational generation of constitutively active cores from larger phosphatases in the malaria parasite, Plasmodium falciparum: implications for proteomics | 0 | 4 |
| 8 | 2 | 97 | 8 2004 CELLULAR MICROBIOLOGY 6 (10): 893-903 Blackman MJ Proteases in host cell invasion by the malaria parasite | 0 | 2 |
| 9 | 1 | 61 | 9 2004 CURRENT OPINION IN BIOTECHNOLOGY 15 (1): 52-57 Holzman T; Kolker E Statistical analysis of global gene expression data: some practical considerations | 0 | 5 |
| 10 | 1 | 40 | 10 2004 CURRENT OPINION IN MICROBIOLOGY 7 (4): 382-387 Llinas M; DeRisi JL Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis | 0 | 0 |
| # | LCR | NCR | Node / Date / Journal / Author | LCS | GCS |
| 11 | 1 | 72 | 11 2004 CURRENT OPINION IN MICROBIOLOGY 7 (4): 388-396 Dowse T; Soldati D Host cell invasion by the apicomplexans: the significance of microneme protein proteolysis | 2 | 4 |
| 12 | 1 | 42 | 12 2004 CURRENT OPINION IN STRUCTURAL BIOLOGY 14 (3): 283-291 Babu MM; Luscombe NM; Aravind L; Gerstein M; Teichmann SA Structure and evolution of transcriptional regulatory networks | 0 | 17 |
| 13 | 1 | 163 | 13 2004 EUROPEAN JOURNAL OF BIOCHEMISTRY 271 (15): 3155-3170 Albrecht M; Golatta M; Wullner U; Lengauer T Structural and functional analysis of ataxin-2 and ataxin-3 | 0 | 5 |
| 14 | 1 | 48 | 14 2004 FEBS LETTERS 572 (1-3): 109-117 Choi SJ; Parent R; Guillaume C; Deregnaucourt C; Delarbre C; et al. Isolation and characterization of Psalmopeotoxin I and II: two novel antimalarial peptides from the venom of the tarantula Psalmopoeus cambridgei | 0 | 0 |
| 15 | 2 | 50 | 15 2004 GENOME RESEARCH 14 (9): 1686-1695 Templeton TJ; Iyer LM; Anantharaman V; Enomoto S; Abrahante JE; et al. Comparative analysis of apicomplexa and genomic diversity in eukaryotes | 1 | 9 |
| 16 | 1 | 33 | 16 2004 GENOME RESEARCH 14 (10B): 2076-2082 Aguiar JC; LaBaer J; Blair PL; Shamailova VY; Koundinya M; et al. High-throughput generation of P. falciparum functional molecules by recombinational cloning | 1 | 2 |
| 17 | 1 | 68 | 17 2004 GENOME RESEARCH 14 (11): 2308-2318 Le Roch KG; Johnson JR; Florens L; Zhou YY; Santrosyan A; et al. Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle | 2 | 11 |
| 18 | 1 | 50 | 18 2004 HUMAN MOLECULAR GENETICS 13 (14): 1461-1470 Dobson AT; Raja R; Abeyta MJ; Taylor T; Shen S; et al. The unique transcriptome through day 3 of human preimplantation development | 0 | 4 |
| 19 | 1 | 75 | 19 2004 INTERNATIONAL JOURNAL FOR PARASITOLOGY 34 (13-14): 1489-1499 Rosenthal PJ Cysteine proteases of malaria parasites | 1 | 8 |
| 20 | 2 | 59 | 20 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (52): 54088-54096 Omara-Opyene AL; Moura PA; Sulsona CR; Bonilla JA; Yowell CA; et al. Genetic disruption of the Plasmodium falciparum digestive vacuole plasmepsins demonstrates their functional redundancy | 0 | 1 |
| # | LCR | NCR | Node / Date / Journal / Author | LCS | GCS |
| 21 | 1 | 15 | 21 2004 JOURNAL OF INFECTIOUS DISEASES 190 (11): 1998-2000 Skinner-Adams TS; McCarthy JS; Gardiner DL; Hilton PM; Andrews KT Antiretrovirals as antimalarial agents | 0 | 7 |
| 22 | 1 | 83 | 22 2004 LANCET INFECTIOUS DISEASES 4 (2): 100-111 Bryant PA; Venter D; Robins-Browne R; Curtis N Chips with everything: DNA microarrays in infectious diseases | 0 | 26 |
| 23 | 1 | 42 | 23 2004 MALARIA JOURNAL 3: Art. No. 23 Bozdech Z; Ginsburg H Antioxidant defense in Plasmodium falciparum - data mining of the transcriptome | 0 | 3 |
| 24 | 1 | 25 | 24 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 135 (1): 143-148 Florent I; Charneau S; Grellier P Plasmodium falciparum genes differentially expressed during merozoite morphogenesis | 0 | 0 |
| 25 | 1 | 47 | 25 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 136 (1): 35-42 Gunasekera AM; Patankar S; Schug J; Eisen G; Kissinger J; et al. Widespread distribution of antisense transcripts in the Plasmodium falciparum genome | 3 | 7 |
| 26 | 1 | 53 | 26 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 136 (2): 181-189 Hawthorne PL; Trenholme KR; Skinner-Adams TS; Spielmann T; Fischer K; et al. A novel Plasmodium falciparum ring stage protein, REX, is located in Maurer's clefts | 1 | 3 |
| 27 | 1 | 57 | 27 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 136 (2): 211-220 Ulschmid JK; Rahlfs S; Schirmer RH; Becker K Adenylate kinase and GTP : AMP phosphotransferase of the malarial parasite Plasmodium falciparum central players in cellular energy metabolism | 0 | 3 |
| 28 | 1 | 66 | 28 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 137 (1): 121-132 Sienkiewicz N; Daher W; Dive D; Wrenger C; Viscogliosi E; et al. Identification of a mitochondrial superoxide dismutase with an unusual targeting sequence in Plasmodium falciparum | 0 | 0 |
| 29 | 1 | 40 | 29 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 137 (1): 161-168 Wang QA; Brown S; Roos DS; Nussenzweig V; Bhanot P Transcriptome of axenic liver stages of Plasmodium yoelii | 1 | 2 |
| 30 | 1 | 44 | 30 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 137 (2): 239-245 Cann H; Brown SV; Oguariri RM; Golightly LM 3 ' UTR signals necessary for expression of the Plasmodium gallinaceum ookinete protein, Pgs28, share similarities with those of yeast and plants | 0 | 0 |
| # | LCR | NCR | Node / Date / Journal / Author | LCS | GCS |
| 31 | 1 | 23 | 31 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 137 (2): 349-353 Ntumngia FB; Bouyou-Akotet MK; Uhlemann AC; Mordmuller B; Kremsner PG; et al. Characterisation of a tryptophan-rich Plasmodium falciparum antigen associated with merozoites | 0 | 2 |
| 32 | 1 | 32 | 32 2004 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 137 (2): 355-359 Shue P; Brown SV; Cann H; Singer EF; Appleby S; et al. The 3 ' UTR elements of P-gallinaceum protein Pgs28 are functionally distinct from those of human cells | 0 | 0 |
| 33 | 1 | 41 | 33 2004 MOLECULAR MICROBIOLOGY 53 (1): 55-63 Withers-Martinez C; Jean L; Blackman MJ Subtilisin-like proteases of the malaria parasite | 1 | 6 |
| 34 | 1 | 53 | 34 2004 MOLECULAR MICROBIOLOGY 53 (1): 103-113 Wrenger C; Muller S The human malaria parasite Plasmodium falciparum has distinct organelle-specific lipoylation pathways | 1 | 7 |
| 35 | 1 | 57 | 35 2004 MOLECULAR MICROBIOLOGY 54 (3): 575-587 Lingelbach K; Kirk K; Rogerson S; Langhorne J; Carucci DJ; et al. Molecular approaches to malaria | 0 | 0 |
| 36 | 1 | 107 | 36 2004 NATURE REVIEWS DRUG DISCOVERY 3 (6): 509-520 Fidock DA; Rosenthal PJ; Croft SL; Brun R; Nwaka S Antimalarial drug discovery: Efficacy models for compound screening | 1 | 20 |
| 37 | 1 | 57 | 37 2004 PARASITOLOGY 129: 273-287 Margos G; Bannister LH; Dluzewski AR; Hopkins J; Williams IT; et al. Correlation of structural development and differential expression of invasion-related molecules in schizonts of Plasmodium falciparum | 0 | 0 |
| 38 | 1 | 18 | 38 2004 PLOS BIOLOGY 2 (5): Art. No. e145 Campbell AM Open access: A PLos for education | 0 | 0 |
| 39 | 2 | 21 | 39 2004 SCIENCE 306 (5703): 1934-1937 Hiller NL; Bhattacharjee S; van Ooij C; Liolios K; Harrison T; et al. A host-targeting signal in virulence proteins reveals a secretome in malarial infection | 3 | 21 |
| 40 | 1 | 1 | 40 2004 SCIENTIST 18 (6): 39-40 Hunter P Affymetrix showcases third-party microarray analysis software | 0 | 1 |
| # | LCR | NCR | Node / Date / Journal / Author | LCS | GCS |
| 41 | 1 | 26 | 41 2004 TRENDS IN GENETICS 20 (8): 340-344 Huynen MA; Snel B; van Noort V Comparative genomics for reliable protein-function prediction from genomic data | 0 | 3 |
| 42 | 1 | 40 | 42 2004 TRENDS IN PARASITOLOGY 20 (5): 227-232 Baker DA; Kelly JM Purine nucleotide cyclases in the malaria parasite | 0 | 0 |
| 43 | 2 | 30 | 43 2004 TRENDS IN PARASITOLOGY 20 (12): 553-557 Coppel RL; Roos DS; Bozdech Z The genomics of malaria infection | 0 | 0 |
| 44 | 2 | 72 | 44 2004 TRENDS IN PARASITOLOGY 20 (12): 567-574 Soldati D; Foth BJ; Cowman AF Molecular and functional aspects of parasite invasion | 1 | 2 |
| 45 | 1 | 51 | 45 2004 TRENDS IN PARASITOLOGY 20 (12): 575-580 Khan SM; Waters AP Malaria parasite transmission stages: an update | 0 | 0 |
| 46 | 1 | 24 | 46 2004 TRENDS IN PARASITOLOGY 20 (12): 611-614 Cooke BM; Coppel RL Blue skies or stormy weather: what lies ahead for malaria research? | 0 | 0 |
| 47 | 1 | 26 | 47 2005 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 331 (4): 1178-1184 Perez-Leal O; Sierra AY; Barrero CA; Moncada C; Martinez P; et al. Identifying and characterising the Plasmodium falciparum merozoite surface protein 10 Plasmodium vivax homologue | 0 | 0 |
| 48 | 1 | 7 | 48 2005 BIOINFORMATICS 21 (8): 1538-1541 Cui QH; Liu B; Jiang TX; Ma SD Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression data | 0 | 0 |
| 49 | 2 | 26 | 49 2005 BMC GENOMICS 6: Art. No. 30 Schneider AG; Mercereau-Puijalon O A new Apicomplexa-specific protein kinase family: multiple members in Plasmodium falciparum, all with an export signature | 0 | 1 |
| 50 | 2 | 100 | 50 2005 BMC GENOMICS 6: Art. No. 100 Callebaut I; Prat K; Meurice E; Mornon JP; Tomavo S Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes | 0 | 0 |
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| 51 | 2 | 17 | 51 2005 EXPERIMENTAL PARASITOLOGY 110 (4): 389-393 Seydel KB; Gaur D; Aravind L; Subramanian G; Miller LH Plasmodium falciparum: Characterization of a late asexual stage Golgi protein containing both ankyrin and DHHC domains | 0 | 0 |
| 52 | 1 | 111 | 52 2005 EXPERT OPINION ON INVESTIGATIONAL DRUGS 14 (7): 871-883 Rathore D; McCutchan TF; Sullivan M; Kumar S Antimalarial drugs: current status and new developments | 0 | 0 |
| 53 | 1 | 75 | 53 2005 EXPERT REVIEW OF MOLECULAR DIAGNOSTICS 5 (4): 521-530 Huete-Perez JA; Flores-Obando RE; Ghedin E; Caffrey CR Genomic and proteomic approaches for Chagas' disease: critical analysis of diagnostic methods | 0 | 0 |
| 54 | 3 | 139 | 54 2005 GENOME BIOLOGY 6 (3): Art. No. R26 Martin RE; Henry RI; Abbey JL; Clements JD; Kirk K The 'permeome' of the malaria parasite: an overview of the membrane transport proteins of Plasmodium falciparum | 0 | 0 |
| 55 | 1 | 34 | 55 2005 INFECTION AND IMMUNITY 73 (7): 3912-3922 Drew DR; Sanders PR; Crabb BS Plasmodium falciparum merozoite surface protein 8 is a ring-stage membrane protein that localizes to the parasitophorous vacuole of infected erythrocytes | 0 | 0 |
| 56 | 1 | 21 | 56 2005 INTERNATIONAL JOURNAL FOR PARASITOLOGY 35 (5): 523-531 Simpson KM; Baum J; Good RT; Winzeler EA; Cowman AF; et al. A comparison of match-only algorithms for the analysis of Plasmodium falciparum oligonucleotide arrays | 0 | 0 |
| 57 | 1 | 154 | 57 2005 INTERNATIONAL JOURNAL FOR PARASITOLOGY 35 (6): 597-615 Coppens I; Vielemeyer O Insights into unique physiological features of neutral lipids in Apicomplexa: from storage to potential mediation in parasite metabolic activities | 0 | 0 |
| 58 | 1 | 49 | 58 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (7): 5242-5248 Wrenger C; Eschbach ML; Muller IB; Warnecke D; Walter RD Analysis of the vitamin B6 biosynthesis pathway in the human malaria parasite Plasmodium falciparum | 0 | 1 |
| 59 | 1 | 45 | 59 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (36): 31957-31964 Reininger L; Billker O; Tewari R; Mukhopadhyay A; Fennell C; et al. A NIMA-related protein kinase is essential for completion of the sexual cycle of malaria parasites | 0 | 0 |
| 60 | 2 | 39 | 60 2005 JOURNAL OF CELL BIOLOGY 170 (4): 551-557 Beraldo FH; Almeida FM; da Silva AM; Garcia CRS Cyclic AMP and calcium interplay as second messengers in melatonin-dependent regulation of Plasmodium falciparum cell cycle | 0 | 0 |
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| 61 | 2 | 29 | 61 2005 JOURNAL OF EXPERIMENTAL MEDICINE 202 (2): 225-230 Aly ASI; Matuschewski K A malarial cysteine protease is necessary for Plasmodium sporozoite egress from oocysts | 0 | 0 |
| 62 | 2 | 39 | 62 2005 JOURNAL OF INFECTIOUS DISEASES 191 (7): 1196-1203 Daily JP; Le Roch KG; Sarr O; Ndiaye D; Lukens A; et al. In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins | 2 | 3 |
| 63 | 2 | 35 | 63 2005 MALARIA JOURNAL 4: Art. No. 17 Bozdech Z; Ginsburg H Data mining of the transcriptome of Plasmodium falciparum: the pentose phosphate pathway and ancillary processes | 0 | 0 |
| 64 | 3 | 50 | 64 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 140 (2): 153-160 Gardiner DL; Dixon MWA; Spielmann T; Skinner-Adams TS; Hawthorne PL; et al. Implication of a Plasmodium falciparum gene in the switch between asexual reproduction and gametocytogenesis | 0 | 1 |
| 65 | 2 | 56 | 65 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 141 (2): 145-153 Seow F; Sato S; Janssen CS; Riehle MO; Mukhopadhyay A; et al. The plastidic DNA replication enzyme complex of Plasmodium falciparum | 0 | 0 |
| 66 | 3 | 31 | 66 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 142 (2): 177-183 Sacci JB; Ribeiro JMC; Huang FY; Alam U; Russell JA; et al. Transcriptional analysis of in vivo Plasmodium yoelii liver stage gene expression | 0 | 0 |
| 67 | 2 | 26 | 67 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 142 (2): 184-192 Gruner AC; Hez-Deroubaix S; Snounou G; Hall N; Bouchier C; et al. Insights into the P. y. yoelii hepatic stage transcriptome reveal complex transcriptional patterns | 0 | 0 |
| 68 | 1 | 28 | 68 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 142 (2): 237-247 Beeram BR; Olivieri A; Silvestrini F; Alano P; Sharma A Biochemical characterization of the two nucleosome assembly proteins from Plasmodium falciparum | 0 | 0 |
| 69 | 1 | 44 | 69 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 143 (1): 29-38 Hodges M; Yikilmaz E; Patterson G; Kasvosve I; Rouault TA; et al. An iron regulatory-like protein expressed in Plasmodium falciparum displays aconitase activity | 0 | 0 |
| 70 | 4 | 35 | 70 2005 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 143 (1): 90-99 Eksi S; Haile Y; Furuya T; Ma L; Su XZ; et al. Identification of a subtelomeric gene family expressed during the asexual-sexual stage transition in Plasmodium falciparum | 0 | 0 |
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| 71 | 2 | 57 | 71 2005 MOLECULAR MICROBIOLOGY 55 (1): 27-38 McMillan PJ; Stimmler LM; Foth BJ; McFadden GI; Muller S The human malaria parasite Plasmodium falciparum possesses two distinct dihydrolipoamide dehydrogenases | 0 | 1 |
| 72 | 1 | 40 | 72 2005 MOLECULAR MICROBIOLOGY 55 (1): 184-196 Dorin D; Semblat JP; Poullet P; Alano P; Goldring JPD; et al. PfPK7, an atypical MEK-related protein kinase, reflects the absence of classical three-component MAPK pathways in the human malaria parasite Plasmodium falciparum | 0 | 3 |
| 73 | 1 | 57 | 73 2005 MOLECULAR MICROBIOLOGY 57 (2): 405-419 van Dooren GG; Marti M; Tonkin CJ; Stimmler LM; Cowman AF; et al. Development of the endoplasmic reticulum, mitochondrion and apicoplast during the asexual life cycle of Plasmodium falciparum | 0 | 0 |
| 74 | 3 | 70 | 74 2005 NUCLEIC ACIDS RESEARCH 33 (13): 3994-4006 Balaji S; Babu MM; Iyer LM; Aravind L Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains | 0 | 0 |
| 75 | 2 | 46 | 75 2005 RNA-A PUBLICATION OF THE RNA SOCIETY 11 (4): 365-370 Militello KT; Patel V; Chessler AD; Fisher JK; Kasper JM; et al. RNA polymerase II synthesizes antisense RNA in Plasmodium falciparum | 0 | 0 |
| 76 | 1 | 27 | 76 2005 SCIENCE 307 (5706): 82-86 Hall N; Karras M; Raine JD; Carlton JM; Kooij TWA; et al. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses | 2 | 16 |
| 77 | 3 | 25 | 77 2005 TRENDS IN PARASITOLOGY 21 (6): 254-258 Dowse TJ; Soldati D Rhomboid-like proteins in apicomplexa: phylogeny and nomenclature | 0 | 2 |
| 78 | 4 | 20 | 78 2005 TRENDS IN PARASITOLOGY 21 (8): 350-352 Llinas M; del Portillo HA Mining the malaria transcriptome | 0 | 0 |
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