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Mon Feb 21 09:56:35 2005
Gene-expression profiles predict survival
of patients with lung adenocarcinoma

Beer DG, Kardia SLR, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen GA, Gharib TG, Thomas DG, Lizyness ML, Kuick R, Hayasaka S, Taylor JMG, Iannettoni MD, Orringer MB, Hanash S
NATURE MEDICINE 8 (8): 816-824 AUG 2002
and the citing papers

Nodes: 179, Authors: 1011, Journals: 96, Outer References: 6194, Words: 619
Collection span: 2002 - 2005
View: Overview. Sorted by journal name.
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
11147 2003 AMERICAN JOURNAL OF PATHOLOGY 163(5):1985-1995
Shedden KA; Taylor JMG; Giordano TJ; Kuick R; Misek DE; et al.
Accurate molecular classification of human cancers based on gene expression using a simple classifier with a pathological tree-based framework
12
21588 2003 AMERICAN JOURNAL OF PATHOLOGY 163(6):2383-2395
Linn SC; West RB; Pollack JR; Zhu S; Hernandez-Boussard T; et al.
Gene expression patterns and gene copy number changes in dermatofibrosarcoma protuberans
011
3158172 2005 AMERICAN JOURNAL OF PATHOLOGY 166(1):81-92
Dowen SE; Crnogorac-Jurcevic T; Gangeswaran R; Hansen M; Eloranta JJ; et al.
Expression of S100P and its novel binding partner S100PBPR in early pancreatic cancer
00
444670 2004 AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE 170(2):167-174
Borczuk AC; Shah L; Pearson GDN; Walter KL; Wang LQ; et al.
Molecular signatures in biopsy specimens of lung cancer
00
53259 2003 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 29(2):153-156
Rom WN; Tchou-Wong KM
Functional genomics in lung cancer and biomarker detection
00
611510 2003 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 29(2):157-162
Powell CA; Spira A; Derti A; DeLisi C; Liu G; et al.
Gene expression in lung adenocarcinomas of smokers and nonsmokers
411
712511 2003 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 29(3):S32-S36
Kaminski N
Microarray analysis of idiopathic pulmonary fibrosis
05
844671 2004 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 31(2):S39-S44
[Anon]
Expression analysis in lung cancer - The search for biomarkers
00
914072 2004 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 31(2):S72-S75
[Anon]
Identifying regulatory networks - Lessons from yeast to humans
00
102115173 2005 ANNALS OF SURGERY 241(1):16-26
Mocellin S; Provenzano M; Rossi CR; Pilati P; Nitti D; et al.
DNA array-based gene profiling - From surgical specimen to the molecular portrait of cancer
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
1113173 2004 ARCHIVES OF OTOLARYNGOLOGY-HEAD & NECK SURGERY 130(3):295-302
Schmalbach CE; Chepeha DB; Giordano TJ; Rubin MA; Teknos TN; et al.
Molecular profiling and the identification of genes associated with metastatic oral cavity/pharynx squamous cell carcinoma
01
1214074 2004 BERNOULLI 10(6):1011-1037
Keles S; Van der Laan M; Dudoit S
Asymptotically optimal model selection method with right censored outcomes
00
1312975 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 314(4):1133-1140
Shimoji T; Kanda H; Kitagawa T; Kadota K; Asai R; et al.
Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma
02
1423876 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 315(4):1088-1096
Daiba A; Inaba N; Ando S; Kajiyama N; Yatsuhashi H; et al.
A low-density cDNA microarray with a unique reference RNA: pattern recognition analysis for IFN efficacy prediction to HCV as a model
00
1514777 2004 BIOINFORMATICS 20(18):3544-3552
Linder R; Dew D; Sudhoff H; Theegarten D; Remberger K; et al.
The 'subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses
00
16332174 2005 BIOINFORMATICS 21(2):171-178
Ein-Dor L; Kela I; Getz G; Givol D; Domany E
Outcome signature genes in breast cancer: is there a unique set?
00
171381 2002 BIOTECHNIQUES :46-53
Sreekumar A; Chinnaiyan AM
Using protein microarrays to study cancer
02
1813512 2003 BIOTECHNIQUES :22-+
Scharpf R; Garrett ES; Hu J; Parmigiani G
Statistical modeling and visualization of molecular profiles in cancer
01
1919513 2003 BLOOD 102(2):763-771
Ichiba T; Teshima T; Kuick R; Misek DE; Liu C; et al.
Early changes in gene expression profiles of hepatic GVHD uncovered by oligonucleotide microarrays
07
2013714 2003 BLOOD 102(5):1849-1856
Yagi T; Morimoto A; Eguchi M; Hibi S; Sako M; et al.
Identification of a gene expression signature associated with pediatric AML prognosis
112
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
2111215 2003 BMC BIOINFORMATICS 4
O'Neill MC; Song L
Neural network analysis of lymphoma microarray data: prognosis and diagnosis near-perfect
03
2221678 2004 BMC BIOINFORMATICS 5
Jiang HY; Deng YP; Chen HS; Tao L; Sha QY; et al.
Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes
01
2311716 2003 BMC GENOMICS 4
McClintick JN; Jerome RE; Nicholson CR; Crabb DW; Edenberg HJ
Reproducibility of oligonucleotide arrays using small samples
08
2423479 2004 BMC GENOMICS 5
Lopez F; Rougemont J; Loriod B; Bourgeois A; Loi L; et al.
Feature extraction and signal processing for nylon DNA microarrays
02
2512380 2004 BMC GENOMICS 5
Schneider J; Buness A; Huber W; Volz J; Kioschis P; et al.
Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments
02
2622981 2004 CANCER 101(7):1632-1638
Shah L; Walter KL; Borczuk AC; Kawut SM; Sonett JR; et al.
Expression of syndecan-1 and expression of epidermal growth factor receptor are associated with survival in patients with nonsmall cell lung carcinoma
00
2715217 2003 CANCER CELL 3(1):9-15
Celis JE; Gromov P
Proteomics in translational cancer research: Toward an integrated approach
221
281982 2004 CANCER CHEMOTHERAPY AND PHARMACOLOGY 54:S21-S24
Haraguchi N; Inoue H; Mimori K; Tanaka F; Utsunomiya T; et al.
Analysis of gastric cancer with cDNA microarray
00
2914218 2003 CANCER DETECTION AND PREVENTION 27(4):285-290
Zhong L; Peng XJ; Hidalgo GE; Doherty DE; Stromberg AJ; et al.
Antibodies to HSP70 and HSP90 in serum in non-small cell lung cancer patients
00
3022819 2003 CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION 12(9):905-910
Gordon GJ; Richards WG; Sugarbaker DJ; Jaklitsch MT; Bueno R
A prognostic test for adenocarcinoma of the lung from gene expression profiling data
12
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
3115483 2004 CANCER GENETICS AND CYTOGENETICS 149(2):98-106
Kettunen E; Anttila S; Seppanen JK; Karjalainen A; Edgren H; et al.
Differentially expressed genes in nonsmall cell lung cancer: expression profiling of cancer-related genes in squamous cell lung cancer
03
3212784 2004 CANCER GENETICS AND CYTOGENETICS 154(1):63-66
Selvanayagam ZE; Cheung TH; Wei N; Vittal R; Lo KWK; et al.
Prediction of chemotherapeutic response in ovarian cancer with DNA microarray expression profiling
00
3318920 2003 CANCER INVESTIGATION 21(6):937-949
Luo J; Isaacs WB; Trent JM; Duggan DJ
Looking beyond morphology: Cancer gene expression profiling using DNA microarrays
06
3414585 2004 CANCER LETTERS 212(1):83-93
Sun WY; Zhang KT; Zhang XY; Lei WD; Xiao T; et al.
Identification of differentially expressed genes in human lung squamous cell carcinoma using suppression subtractive hybridization
01
3511721 2003 CANCER RESEARCH 63(7):1652-1656
Campa MJ; Wang MZ; Howard B; Fitzgerald MC; Patz EF
Protein expression profiling identifies macrophage migration inhibitory factor and cyclophilin A as potential molecular targets in non-small cell lung cancer
113
3617422 2003 CANCER RESEARCH 63(8):1943-1953
Pedersen N; Mortensen S; Sorensen SB; Pedersen MW; Rieneck K; et al.
Transcriptional gene expression profiling of small cell lung cancer cells
29
3715423 2003 CANCER RESEARCH 63(14):4136-4143
Miller CT; Aggarwal S; Lin TK; Dagenais SL; Contreras JI; et al.
Amplification and overexpression of the dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 (DYRK2) gene in esophageal and lung adenocarcinomas
04
3814724 2003 CANCER RESEARCH 63(17):5243-5250
Nishizuka S; Chen ST; Gwadry FG; Alexander J; Major SM; et al.
Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling
422
3913886 2004 CANCER RESEARCH 64(1):196-201
Koh TJ; Field JK; Varro A; Liloglou T; Fielding P; et al.
Glycine-extended gastrin promotes the growth of lung cancer
01
4014487 2004 CANCER RESEARCH 64(4):1255-1265
Meireles SI; Cristo EB; Carvalho AF; Hirata R; Pelosof A; et al.
Molecular classifiers for gastric cancer and nonmalignant diseases of the gastric mucosa
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
4127788 2004 CANCER RESEARCH 64(11):3814-3822
Rubin MA; Varambally S; Beroukhim R; Tomlins SA; Rhodes DR; et al.
Overexpression, amplification, and androgen regulation of TPD52 in prostate cancer
03
4213489 2004 CANCER RESEARCH 64(11):4040-4048
Dyrskjot L; Kruhoffer M; Thykjaer T; Marcussen N; Jensen JL; et al.
Gene expression in the urinary bladder: A common carcinoma in situ gene expression signature exists disregarding histopathological classification
00
4312390 2004 CANCER RESEARCH 64(16):5564-5569
Diederichs S; Bulk E; Steffen B; Ji P; Tickenbrock L; et al.
S100 family members and trypsinogens are predictors of distant metastasis and survival in early-stage non-small cell lung cancer
01
4414491 2004 CANCER RESEARCH 64(19):6883-6891
Wei JS; Greer BT; Westermann F; Steinberg SM; Son CG; et al.
Prediction of clinical outcome using gene expression profiling and artificial neural networks for patients with neuroblastoma
03
4514625 2003 CARCINOGENESIS 24(11):1819-1826
Gariboldi M; Spinola M; Milani S; Pignatiello C; Kadota K; et al.
Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice
00
4614192 2004 CARCINOGENESIS 25(7):1157-1163
Cuezva JM; Chen G; Isidoro A; Misek DE; Hanash SM; et al.
The bioenergetic signature of lung adenocarcinomas is a molecular marker of cancer diagnosis and prognosis
00
4732393 2004 CHEST 125(5):111S-115S
Kaminski N; Krupsky M
Gene expression patterns, prognostic and diagnostic markers, and lung cancer biology
00
4813194 2004 CHEST 125(5):123S-127S
Omenn GS
Human lung cancer chemoprevention strategies
00
4937395 2004 CLINICAL BIOCHEMISTRY 37(7):572-578
Robison JE; Perreard L; Bernard PS
State of the science: molecular classifications of breast cancer for clinical diagnostics
00
501452 2002 CLINICAL CANCER RESEARCH 8(12):3803-3812
Moran CJ; Arenberg DA; Huang CC; Giordano TJ; Thomas DG; et al.
RANTES expression is a predictor of survival in stage I lung adenocarcinoma
410
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
5114226 2003 CLINICAL CANCER RESEARCH 9(7):2605-2612
Hung TL; Chen FF; Liu JM; Lai WW; Hsiao AL; et al.
Clinical evaluation of HER-2/neu protein in malignant pleural effusion-associated lung adenocarcinoma and as a tumor marker in pleural effusion diagnosis
01
5212527 2003 CLINICAL CANCER RESEARCH 9(13):4695-4704
Yamagata N; Shyr Y; Yanagisawa K; Edgerton M; Dang TP; et al.
A training-testing approach to the molecular classification of resected non-small cell lung cancer
25
5312828 2003 CLINICAL CANCER RESEARCH 9(15):5486-5492
Wong YF; Selvanayagam ZE; Wei N; Porter J; Vittal R; et al.
Expression Genomics of cervical cancer: Molecular classification and prediction of radiotherapy response by DNA microarray
14
5414229 2003 CLINICAL CANCER RESEARCH 9(16):5980-5987
Lim EH; Aggarwal A; Agasthian T; Wong PS; Tan C; et al.
Feasibility of using low-volume tissue samples for gene expression profiling of advanced non-small cell lung cancers
34
5514296 2004 CLINICAL CANCER RESEARCH 10(1):136-143
Onn A; Correa AM; Gilcrease M; Isobe T; Massarelli E; et al.
Synchronous overexpression of epidermal growth factor receptor and HER2-neu protein is a predictor of poor outcome in patients with stage I non-small cell lung cancer
14
5611497 2004 CLINICAL CANCER RESEARCH 10(9):2922-2927
Parmigiani G; Garrett-Mayer ES; Anbazhagan R; Gabrielson E
A cross-study comparison of gene expression studies for the molecular classification of lung cancer
00
5744898 2004 CLINICAL CANCER RESEARCH 10(10):3237-3248
Petty RD; Nicolson MC; Kerr KM; Collie-Duguid E; Murray GI
Gene expression profiling in non-small cell lung cancer: From molecular mechanisms to clinical application
00
5815799 2004 CLINICAL CANCER RESEARCH 10(10):3410-3421
Modlich O; Prisack HB; Pitschke G; Ramp U; Ackermann R; et al.
Identifying superficial, muscle-invasive, and metastasizing transitional cell carcinoma of the bladder: Use of cDNA array analysis of gene expression profiles
01
59223100 2004 CLINICAL CANCER RESEARCH 10(11):3745-3754
Buffa FM; Bentzen SM; Daley FM; Dische S; Saunders MI; et al.
Molecular marker profiles predict locoregional control of head and neck squamous cell carcinoma in a Randomized trial of continuous hyperfractionated accelerated radiotherapy
01
60133101 2004 CLINICAL CANCER RESEARCH 10(18):6023-6028
Bianchi F; Hu JT; Pelosi G; Cirincione R; Ferguson M; et al.
Lung cancers detected by screening with spiral computed tomography have a malignant phenotype when analyzed by cDNA Mmicroarray
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
61344102 2004 CLINICAL CANCER RESEARCH 10(18):6029-6038
Kurokawa Y; Matoba R; Nagano H; Sakon M; Takemasa I; et al.
Molecular prediction of response to 5-fluorouracil and interferon-alpha combination chemotherapy in advanced hepatocellular carcinoma
00
62218175 2005 CLINICAL CANCER RESEARCH 11(2):565-572
Dobbin KK; Beer DG; Meyerson M; Yeatman TJ; Gerald WL; et al.
Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays
00
634124103 2004 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 7(3):183-206
Kim AS
Clinical impact of gene expression profiling on oncology diagnosis, prognosis, and treatment
01
64197104 2004 CURRENT CANCER DRUG TARGETS 4(2):111-124
Onyango P
The role of emerging genomics and proteomics technologies in cancer drug target discovery
01
65118130 2003 CURRENT MEDICINAL CHEMISTRY 10(8):691-706
Goessl C
Noninvasive molecular detection of cancer - the bench and the bedside
06
6613731 2003 CURRENT OPINION IN CELL BIOLOGY 15(2):213-220
Ciro M; Bracken AP; Helin K
Profiling cancer
13
67961105 2004 CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT 7(3):290-303
Muller-Hagen G; Beinert T; Sommer A
Aspects of lung cancer gene expression profiling
00
681273 2002 CURRENT OPINION IN MOLECULAR THERAPEUTICS 4(6):587-593
Sreekumar A; Chinnaiyan AM
Protein microarrays: A powerful tool to study cancer
04
69452106 2004 CURRENT OPINION IN MOLECULAR THERAPEUTICS 6(6):593-599
Sultmann H; Poustka A
Recent advances in transcription profiling of human cancer
00
702154107 2004 DISEASE MARKERS 20(2):71-85
Vourlekis JS; Szabo E
Use of markers for the detection and treatment of lung cancer
00
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71117108 2004 DNA AND CELL BIOLOGY 23(10):715-721
Ptitsyn A
Class discovery analysis of the lung cancer gene expression data
00
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Application of expression genomics in drug development and genomic medicine
00
7314132 2003 DRUG DISCOVERY TODAY 8(8):356-363
Huang Y; Sadee W
Drug sensitivity and resistance genes in cancer chemotherapy: a chemogenomics approach
17
743109110 2004 DRUG RESISTANCE UPDATES 7(3):209-218
Mariadason JM; Arango D; Augenlicht LH
Customizing chemotherapy for colon cancer: the potential of gene expression profiling
00
7524833 2003 ENDOCRINE PATHOLOGY 14(2):107-116
Giordano TJ
Gene expression profiling of endocrine tumors using DNA microarrays: Progress and promise
01
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Heat shock protein 70 (Hsp70) subtype expression in neuroendocrine tissue and identification of a neuroendocrine tumour-specific Hsp70 truncation
00
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Identification and validation of cell surface antigens for antibody targeting in oncology
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78126113 2004 EUROPEAN JOURNAL OF CANCER 40(17):2544-2549
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Transcription profiling of gene expression in drug discovery and development: the NO experience
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Gene expression microarray technologies in the development of new therapeutic agents
01
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Biomarkers of ovarian tumours
00
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Genomic and proteomic technologies for individualisation and improvement of cancer treatment
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8211234 2003 EUROPEAN RESPIRATORY JOURNAL 21(4):565-566
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02
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Gene expression in cancer: the application of microarrays
06
8618637 2003 EXPERT REVIEW OF MOLECULAR DIAGNOSTICS 3(5):635-647
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Classification of bladder cancer by microarray expression profiling: towards a general clinical use of microarrays in cancer diagnostics
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8711138 2003 FEBS LETTERS 540(1-3):167-170
Creighton C; Hanash S; Beer D
Gene expression patterns define pathways correlated with loss of differentiation in lung adenocarcinomas
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Expression profiling identifies chemokine (C-C motif) ligand 18 as an independent prognostic indicator in gastric cancer
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PCR-array gene expression profiling of hepatocellular carcinoma
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Protein expression profiles in adenocarcinomas and squamous cell carcinomas of the lung generated using tissue microarrays
00
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Hunting the primary: novel strategies for defining the origin of tumours
01
11423345 2003 JOURNAL OF PEDIATRICS 142(3):235-239
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The potential of DNA microarrays for the care of children
00
115266137 2004 JOURNAL OF PROTEOME RESEARCH 3(2):245-252
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Assessing protein patterns in disease using imaging mass spectrometry
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