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Wed Nov 6 11:40:56 2002
Articles citing "The complete atomic structure of the large ribosomal subunit at 2.4 angstrom resolution," by N Ban, Science 289, 2000

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31 1999 BIOPOLYMERS 52(3):147-154
Eckstein F; Bramlage B
The hammerhead ribozyme
30
12 1999 BIOPOLYMERS 52(4):157-167
Schroeder SJ; Burkard ME; Turner DH
The energetics of small internal loops in RNA
10
13 2000 ANATOMICAL RECORD 261(5):198-215
Schutt CE; Lindberg U
The new architectonics: An invitation to structural biology
00
14 2000 CELL 103(7):1143-1154
Brodersen DE; Clemons WM; Carter AP; Morgan-Warren RJ; Wimberly BT; Ramakrishnan V
The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit
3822
15 2000 CHEMBIOCHEM 1(4):250-253
Connell SR; Nierhaus KH
Translational termination not yet at its end
00
26 2000 CURRENT OPINION IN CHEMICAL BIOLOGY 4(6):609-618
Niemeyer CM
Self-assembled nanostructures based on DNA: towards the development of nanobiotechnology
152
17 2000 CURRENT OPINION IN STRUCTURAL BIOLOGY 10(6):631-632
Isaacs NV
Proteins - Where is the information in structural space?
00
18 2000 CURRENT OPINION IN STRUCTURAL BIOLOGY 10(6):633-636
Sanyal SC; Liljas A
The end of the beginning: structural studies of ribosomal proteins
44
29 2000 IUBMB LIFE 50(6):347-354
Moreno JMP; Sorensen HP; Mortensen KK; Sperling-Petersen HU
Macromolecular mimicry in translation initiation: A model for the initiation factor IF2 on the ribosome
20
110 2000 JOURNAL OF CELL BIOLOGY 151(5):F23-F26
Aitchison JD; Rout MP
The road to ribosomes: Filling potholes in the export pathway
41
111 2000 JOURNAL OF MOLECULAR BIOLOGY 304(3):335-354
Gutell RR; Cannone JJ; Shang Z; Du Y; Serra MJ
A story: Unpaired adenosine bases in ribosomal RNAs
138
112 2000 JOURNAL OF MOLECULAR BIOLOGY 304(3):371-383
van Buuren BNM; Overmars FJJ; Ippel JH; Altona C; Wijmenga SS
Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection
60
313 2000 JOURNAL OF MOLECULAR BIOLOGY 304(3):471-481
Poulsen SM; Kofoed C; Vester B
Inhibition of the ribosomal peptidyl transferase reaction by the mycarose moiety of the antibiotics carbomycin, spiramycin and tylosin
97
114 2000 JOURNAL OF MOLECULAR BIOLOGY 304(4):507-515
VanLoock MS; Agrawal RK; Gabashvili IS; Qi L; Frank J; Harvey SC
Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation
2012
415 2000 NATURE 407(6802):306-307
Williamson JR
Molecular biology - Small subunit, big science
32
216 2000 NATURE STRUCTURAL BIOLOGY 7(10):817-818
[Anon]
RNA-protein machines rule
00
317 2000 NATURE STRUCTURAL BIOLOGY 7(10):850-854
Collins CA; Guthrie C
The question remains: Is the spliceosome a ribozyme?
376
318 2000 NATURE STRUCTURAL BIOLOGY 7(10):855-861
Puglisi JD; Blanchard SC; Green R
Approaching translation at atomic resolution
147
119 2000 NATURE STRUCTURAL BIOLOGY 7():928-930
Russell RB; Eggleston DS
New roles for structure in biology and drug discovery - Foreword
80
120 2000 NATURE STRUCTURAL BIOLOGY 7():954-956
Doudna JA
Structural genomics of RNA
62
321 2000 SCIENCE 289(5481):878-879
Cech TR
Structural biology - The ribosome is a ribozyme
2210
122 2000 SCIENCE 289(5481):905-920
Ban N; Nissen P; Hansen J; Moore PB; Steitz TA
The complete atomic structure of the large ribosomal subunit at 2.4 angstrom resolution
402402
223 2000 SCIENCE 289(5481):920-930
Nissen P; Hansen J; Ban N; Moore PB; Steitz TA
The structural basis of ribosome activity in peptide bond synthesis
257155
224 2000 SCIENCE 289(5481):947-950
Muth GW; Ortoleva-Donnelly L; Strobel SA
A single adenosine with a neutral pK(a) in the ribosomal peptidyl transferase center
8351
325 2000 SCIENCE 290(5499):2095-2096
Breaker RR
Molecular biology - Making catalytic DNAs
71
226 2000 STRUCTURE 8(10):R195-R200
Brimacombe R
The bacterial ribosome at atomic resolution
55
227 2000 TRENDS IN BIOCHEMICAL SCIENCES 25(10):485-485
Brenner C
Condensing the RNA world
00
128 2000 TRENDS IN BIOCHEMICAL SCIENCES 25(12):611-618
Radford SE
Protein folding: progress made and promises ahead
200
129 2000 TRENDS IN BIOCHEMICAL SCIENCES 25(12):624-631
Baumeister W; Steven AC
Macromolecular electron microscopy in the era of structural genomics
160
130 2000 TRENDS IN BIOCHEMICAL SCIENCES 25(12):637-643
Hendrickson WA
Synchrotron crystallography
102
131 2001 ACCOUNTS OF CHEMICAL RESEARCH 34(10):836-843
Gallego J; Varani G
Targeting RNA with small-molecule drugs: Therapeutic promise and chemical challenges
71
232 2001 ACTA BIOCHIMICA POLONICA 48(1):191-198
Barciszewska MZ; Szymanski M; Erdmann VA; Barciszewski J
Structure and functions of 5S rRNA
11
233 2001 ACTA BIOCHIMICA POLONICA 48(2):409-418
Ciesiolka J; Wrzesinski J; Legiewicz M; Smolska B; Dutkiewicz M
Ribozymes of the hepatitis delta virus: Recent findings on their structure, mechanism of catalysis and possible applications
00
134 2001 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 57():219-224
Perbandt M; Vallazza M; Lippmann C; Betzel C; Erdmann VA
Structure of an RNA duplex with an unusual G center dot C pair in wobble-like conformation at 1.6 angstrom resolution
21
135 2001 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 57():865-866
Wong KB; Wang WK; Proctor MR; Bycroft M; Chen YW
Crystallization and preliminary crystallographic studies of a ribosomal protein L30e from the hyperthermophilic archaeon Thermococcus celer
10
136 2001 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 57():968-976
Fedorov R; Meshcheryakov V; Gongadze G; Fomenkova N; Nevskaya N; Selmer M; Laurberg M; Kristensen O; Al-Karadaghi S; Liljas A; Garber M; Nikonov S
Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins
32
137 2001 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 57():1150-1152
Davydova N; Fedorov R; Streltsov V; Liljas A; Garber M
Crystals of a mutant form of ribosomal protein L22 rendering bacterial ribosomes resistant to erythromycin
11
438 2001 ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 40(22):4128-4158
Niemeyer CM
Nanoparticles, proteins, and nucleic acids: Biotechnology meets materials science
290
239 2001 ANNUAL REVIEW OF BIOCHEMISTRY 70():603-647
Frydman J
Folding of newly translated proteins in vivo: The role of molecular chaperones
342
240 2001 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 45(10):2877-2884
Springer B; Kidan YG; Prammananan T; Ellrott K; Bottger EC; Sander P
Mechanisms of streptomycin resistance: Selection of mutations in the 16S rRNA gene conferring resistance
21
141 2001 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 45(11):3046-3055
Wilcox SK; Cavey GS; Pearson JD
Single ribosomal protein mutations in antibiotic-resistant bacteria analyzed by mass spectrometry
10
142 2001 APPLIED AND ENVIRONMENTAL MICROBIOLOGY 67(2):961-968
Fuchs BM; Syutsubo K; Ludwig W; Amann R
In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes
40
143 2001 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 280(2):460-465
Fisher LW; Torchia DA; Fohr B; Young MF; Fedarko NS
Flexible structures of SIBLING proteins, bone sialoprotein, and osteopontin
110
144 2001 BIOCHEMISTRY 40(8):2387-2396
Yoshida T; Uchiyama S; Nakano H; Kashimori H; Kijima H; Ohshima T; Saihara Y; Ishino T; Shimahara H; Yoshida T; Yokose K; Ohkubo T; Kaji A; Kobayashi Y
Solution structure of the ribosome recycling factor from Aquifex aeolicus
93
145 2001 BIOCHEMISTRY 40(10):3222-3231
Larsson SL; Nygard O
Proposed secondary structure of eukaryote specific expansion segment 15 in 28S rRNA from mice, rats, and rabbits
21
446 2001 BIOCHEMISTRY 40(11):3243-3250
Moore PB
The ribosome at atomic resolution
61
347 2001 BIOCHEMISTRY 40(25):7641-7650
Amarantos I; Xaplanteri MA; Choli-Papadopoulou T; Kalpaxis DL
Effects of two photoreactive spermine analogues on peptide bond formation and their application for labeling proteins in Escherichia coli functional ribosomal complexes
10
148 2001 BIOCHEMISTRY 40(31):9104-9114
Rajamohan F; Ozer Z; Mao C; Uckun FM
Active center cleft residues of pokeweed antiviral protein mediate its high-affinity binding to the ribosomal protein L3
00
149 2001 BIOCHEMISTRY 40(32):9587-9595
Zwieb C; Guven SA; Wower IK; Wower J
Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA
71
150 2001 BIOCHEMISTRY 40(33):9879-9886
Zhang H; Fountain MA; Krugh TR
Structural characterization of a six-nucleotide RNA hairpin loop found in Escherichia coli, r(UUAAGU)
00
151 2001 BIOCHEMISTRY 40(38):11509-11517
Schroeder SJ; Turner DH
Thermodynamic stabilities of internal loops with GU closing pairs in RNA
00
352 2001 BIOCHEMISTRY 40(39):11777-11784
Lavrik IN; Avdeeva ON; Dontsova OA; Froeyen M; Herdewijn PA
Translational properties of mHNA, a messenger RNA containing anhydrohexitol nucleotides
20
353 2001 BIOCHEMISTRY 40(42):12645-12653
DiNitto JP; Huber PW
A role for aromatic amino acids in the binding of Xenopus ribosomal protein L5 to 5S rRNA
00
254 2001 BIOCHEMISTRY-MOSCOW 66(10):1144-1152
Hofmann E
What can medicine learn from the human DNA sequence?
00
155 2001 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1520(1):7-20
Willumeit R; Diedrich G; Forthmann S; Beckmann J; May RP; Stuhrmann HB; Nierhaus KH
Mapping proteins of the 50S subunit from Escherichia coli ribosomes
11
356 2001 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1521(1-3):30-38
Sloma MS; Nygard O
Possible interaction sites of mRNA, tRNA, translation factors and the nascent peptide in 5S, 5.8S and 28S rRNA in in vivo assembled eukaryotic ribosomal complexes
11
757 2001 BIOESSAYS 23(8):725-732
Frank J
Cryo-electron microscopy as an investigative tool: the ribosome as an example
52
158 2001 BIOFUTUR 2001(207):42-45
Douthwaite S; Fourmy D
Deep in the ribosome
00
659 2001 BIOPOLYMERS 61(1):32-51
Suhnel J
Beyond nucleic acid base pairs: From triads to heptads
00
160 2001 CANADIAN JOURNAL OF ZOOLOGY-REVUE CANADIENNE DE ZOOLOGIE 79(2):334-345
Armbruster GFJ
Temperature-based variation of rRNA secondary structure models: a case study in the insect Drosophila simulans, the land snail Isabellaria adriani, and the crustacean Daphnia pulex
00
561 2001 CELL 104(6):813-816
Maguire BA; Zimmermann RA
The ribosome in focus
40
162 2001 CELL 106(6):723-733
Park HS; Himmelbach A; Browning KS; Hohn T; Ryabova LA
A plant viral "reinitiation" factor interacts with the host translational machinery
41
463 2001 CELL 107(3):361-372
Beckmann R; Spahn CMT; Eswar N; Helmers J; Penczek PA; Sali A; Frank J; Blobel G
Architecture of the protein-conducting channel associated with the translating 80S ribosome
194
764 2001 CELL 107(3):373-386
Spahn CMT; Beckmann R; Eswar N; Penczek PA; Sali A; Blobel G; Frank J
Structure of the 80S ribosome from Saccharomyces cerevisiae - tRNA-ribosome and subunit-subunit interactions
167
1265 2001 CELL 107(5):679-688
Harms J; Schluenzen F; Zarivach R; Bashan A; Gat S; Agmon I; Bartels H; Franceschi F; Yonath A
High resolution structure of the large ribosomal subunit from a mesophilic Eubacterium
2321
166 2001 CELLULAR AND MOLECULAR LIFE SCIENCES 58(2):234-243
Holbrook SR; Holbrook EL; Walukiewicz HE
Crystallization of RNA
10
367 2001 CHEMBIOCHEM 2(1):31-35
Lilley DMJ
The ribosome functions as a ribozyme
21
368 2001 CHEMISTRY-A EUROPEAN JOURNAL 7(15):3189-3195
Niemeyer CM
Bioorganic applications of semisynthetic DNA-protein conjugates
10
269 2001 CHIMIA 55(6):487-492
Richmond TJ
The structural basis of gene regulation for DNA organized as chromatin
00
270 2001 CLINICAL MICROBIOLOGY AND INFECTION 7():11-17
Douthwaite S
Structure-activity relationships of ketolides vs. macrolides
20
371 2001 CROATICA CHEMICA ACTA 74(1):1-35
Kojic-Prodic B; Kroon J
(Bio)crystallography at the turn of the millennium
00
472 2001 CURRENT OPINION IN NEUROBIOLOGY 11(5):594-600
McEwen BF; Frank J
Electron tomographic and other approaches for imaging molecular machines
61
173 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(1):39-46
Laity JH; Lee BM; Wright PE
Zinc finger proteins: new insights into structural and functional diversity
261
374 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(1):107-113
Bamford DH; Gilbert RJC; Grimes JM; Stuart DI
Macromolecular assemblies: greater than their parts
20
475 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(2):144-154
Ramakrishnan V; Moore PB
Atomic structures at last: the ribosome in 2000
2513
276 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(3):282-286
Major F; Griffey R
Computational methods for RNA structure determination
11
177 2001 CURRENT OPINION IN STRUCTURAL BIOLOGY 11(3):309-314
Treiber DK; Williamson JR
Beyond kinetic traps in RNA folding
178
178 2001 EMBO JOURNAL 20(6):1415-1424
Lafontaine DA; Norman DG; Lilley DMJ
Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction
102
479 2001 EMBO JOURNAL 20(8):1829-1839
Pioletti M; Schlunzen F; Harms J; Zarivach R; Gluhmann M; Avila H; Bashan A; Bartels H; Auerbach T; Jacobi C; Hartsch T; Yonath A; Franceschi F
Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3
3122
180 2001 EMBO JOURNAL 20(8):2051-2061
Swisher J; Duarte DM; Su LJ; Pyle AM
Visualizing the solvent-inaccessible core of a group II intron ribozyme
82
281 2001 EMBO JOURNAL 20(13):3577-3586
McConnell TS; Steitz JA
Proximity of the invariant loop of U5 snRNA to the second intron residue during pre-mRNA splicing
20
282 2001 EMBO JOURNAL 20(15):4214-4221
Klein DJ; Schmeing TM; Moore PB; Steitz TA
The kink-turn: a new RNA secondary structure motif
1712
483 2001 EMBO JOURNAL 20(22):6434-6442
Pinard R; Hampel KJ; Heckman JE; Lambert D; Chan PA; Major F; Burke JM
Functional involvement of G8 in the hairpin ribozyme cleavage mechanism
60
184 2001 GENOME RESEARCH 11(10):1641-1650
Kennedy SP; Ng WV; Salzberg SL; Hood L; DasSarma S
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
50
285 2001 HELICOBACTER 6(2):100-109
Monstein HJ; de la Cour CD; Jonasson J
Probing 23S ribosomal RNA cleavage sites in coccoid Helicobacter pylori
00
186 2001 INTERNATIONAL JOURNAL FOR PARASITOLOGY 31(5-6):427-433
Cross GAM
African trypanosomes in the 21st century: what is their future in science and in health?
00
287 2001 INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY 33(6):541-553
Kramer G; Ramachandiran V; Hardesty B
Cotranslational folding - omnia mea mecum porto?
21
288 2001 JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY 48():1-8
Douthwaite S; Champney WS
Structures of ketolides and macrolides determine their mode of interaction with the ribosomal target site
53
189 2001 JOURNAL OF BACTERIOLOGY 183(14):4382-4385
Gregory ST; Cate JHD; Dahlberg AE
Spontaneous erythromycin resistance mutation in a 23S rRNA gene, rrlA, of the extreme thermophile Thermus thermophilus IB- 21
00
190 2001 JOURNAL OF BACTERIOLOGY 183(22):6532-6537
Yang XM; Ishiguro EE
Involvement of the N terminus of ribosomal protein L11 in regulation of the RelA protein of Escherichia coli
00
391 2001 JOURNAL OF BACTERIOLOGY 183(22):6565-6572
Maguire BA; Manuilov AV; Zimmermann RA
Differential effects of replacing Escherichia coli ribosomal protein L27 with its homologue from Aquifex aeolicus
00
592 2001 JOURNAL OF BACTERIOLOGY 183(23):6898-6907
Garza-Ramos G; Xiong LQ; Zhong P; Mankin A
Binding site of macrolide antibiotics on the ribosome: New resistance mutation identifies a specific interaction of ketolides with rRNA
30
393 2001 JOURNAL OF BIOCHEMISTRY 129(6):851-860
Sato T; Terabe M; Watanabe H; Gojobori T; Hori-Takemoto C; Miura K
Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency
00
294 2001 JOURNAL OF BIOCHEMISTRY 130(5):695-701
Hosaka H; Yao M; Kimura M; Tanaka I
The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA
00
295 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(3):1974-1983
Gong F; Yanofsky C
Reproducing tna operon regulation in vitro in an S-30 system - Tryptophan induction inhibits cleavage of TnaC peptidyl-RNA?
62
196 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(10):7415-7421
Gaspar LP; Terezan AF; Pinheiro AS; Foguel D; Rebello MA; Silva JL
The metastable state of nucleocapsids of enveloped viruses as probed by high hydrostatic pressure
60
197 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(17):14117-14123
Montesano-Roditis L; Glitz DG; Traut RR; Stewart PL
Cryo-electron microscopic localization of protein L7/L12 within the Escherichia coli 70 S ribosome by difference mapping and Nanogold labeling
20
198 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(23):19762-19769
Gonzalo P; Lavergne JP; Reboud JP
Pivotal role of the P1N-terminal domain in the assembly of the mammalian ribosomal stalk and in the proteosynthetic activity
54
399 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(24):21724-21736
Suzuki T; Terasaki M; Takemoto-Hori C; Hanada T; Ueda T; Wada A; Watanabe K
Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome - Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria
93
1100 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(26):24075-24081
Rajamohan F; Mao C; Uckun FM
Binding interactions between the active center cleft of recombinant pokeweed antiviral protein and the alpha- sarcin/ricin stem loop of ribosomal RNA
00

Cited
nodes
Nodes / AuthorsGCSLCS
2101 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(27):25411-25420
Clark PL; King J
A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates
51
1102 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(35):32474-32479
Guarinos E; Remacha M; Ballesta JPG
Asymmetric interactions between the acidic P1 and P2 proteins in the Saccharomyces cerevisiae ribosomal stalk
10
4103 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(35):33181-33195
Suzuki T; Terasaki M; Takemoto-Hori C; Hanada T; Ueda T; Wada A; Watanabe K
Proteomic analysis of the mammalian mitochondrial ribosome - Identification of protein components in the 28 S small subunit
101
1104 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(36):33821-33825
Yu X; Warner JR
Expression of a micro-protein
10
1105 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(40):37199-37205
Patel U; Yan YP; Hobbs FW; Kaczmarczyk J; Slee AM; Pompliano DL; Kurilla MG; Bobkova EV
Oxazolidinones mechanism of action: Inhibition of the first peptide bond formation
11
4106 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(47):43958-43969
Koc EC; Burkhart W; Blackburn K; Moyer MB; Schlatzer DM; Moseley A; Spremulli LL
The large subunit of the mammalian mitochondrial ribosome - Analysis of the complement of ribosomal proteins present
51
1107 2001 JOURNAL OF BIOLOGICAL CHEMISTRY 276(50):47702-47708
Zvereva MI; Ivanov PV; Teraoka Y; Topilina NI; Dontsova OA; Bogdanov AA; Kalkum M; Nierhaus KH; Shpanchenko OV
Complex of transfer-messenger RNA and elongation factor Tu - Unexpected modes of interaction
31
1108 2001 JOURNAL OF BIOMOLECULAR NMR 20(3):293-294
Markus MA; Triantafillidou D; Choli-Papadopoulou T; Torchia DA
Letter to the Editor: H-1, N-15, and C-13 assignments and secondary structure identification for full-length ribosomal protein L11 from Thermus thermophilus
00
1109 2001 JOURNAL OF BIOMOLECULAR NMR 20(4):311-323
Warren JJ; Moore PB
Application of dipolar coupling data to the refinement of the solution structure of the Sarcin-Ricin loop RNA
20
1110 2001 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 18(6):824-831
Vasudevan SS; Sundaralingam M
The occurrence of the syn-C3' endo conformation and the distorted backbone conformations for C4'-C5' and P-O5' in oligo and polynucleotides
10
2111 2001 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 19(3):381-396
Li W; Ma BY; Shapiro BA
Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop
00
2112 2001 JOURNAL OF CELLULAR PHYSIOLOGY 187(1):11-21
Xiao SH; Houser-Scott F; Engelke DR
Eukaryotic ribonuclease P: Increased complexity to cope with the nuclear Pre-tRNA pathway
101
1113 2001 JOURNAL OF COMPUTATIONAL CHEMISTRY 22(4):407-417
Sommer I; Brimacombe R
Methods for refining interactively established models of ribosomal RNA towards a physico-chemically plausible structure
20
1114 2001 JOURNAL OF EXPERIMENTAL MEDICINE 194(3):285-299
Beck-Engeser GB; Monach PA; Mumberg D; Yang F; Wanderling S; Schreiber K; Espinosa R; Le Beau MM; Meredith SC; Schreiber H
Point mutation in essential genes with loss or mutation of the second allele: Relevance to the retention of tumor-specific antigens
00
2115 2001 JOURNAL OF GENERAL VIROLOGY 82():1027-1041
Donnelly MLL; Hughes LE; Luke G; Mendoza H; ten Dam E; Gani D; Ryan MD
The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences
80
2116 2001 JOURNAL OF MEDICINAL CHEMISTRY 44(24):4137-4156
Ma ZK; Clark RF; Brazzale A; Wang SY; Rupp MJ; Li LP; Griesgraber G; Zhang SM; Yong H; Phan LT; Nemoto PA; Chu DTW; Plattner JJ; Zhang XL; Zhong P; Cao ZS; Nilius AM; Shortridge VD; Flamm R; Mitten M; Meulbroek J; Ewing P; Alder J; Or YS
Novel erythromycin derivatives with aryl groups tethered to the C-6 position are potent protein synthesis inhibitors and active against multidrug-resistant respiratory pathogens
33
2117 2001 JOURNAL OF MOLECULAR BIOLOGY 305(1):167-177
Willumeit R; Forthmann S; Beckmann J; Diedrich G; Ratering R; Stuhrmann HB; Nierhaus KH
Localization of the protein L2 in the 50 S subunit and the 70 S E-coli ribosome
32
2118 2001 JOURNAL OF MOLECULAR BIOLOGY 305(4):785-803
Serganov A; Benard L; Portier C; Ennifar E; Garber M; Ehresmann B; Ehresmann C
Role of conserved nucleotides in building the 16 S rRNA binding site for ribosomal protein S15
41
1119 2001 JOURNAL OF MOLECULAR BIOLOGY 306(4):703-716
Whitby MC; Dixon J
Fission yeast nascent polypeptide-associated complex binds to four-way DNA junctions
20
1120 2001 JOURNAL OF MOLECULAR BIOLOGY 307(1):197-211
Morosyuk SV; Cunningham PR; SantaLucia J
Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure
31
1121 2001 JOURNAL OF MOLECULAR BIOLOGY 307(1):229-246
Batey RT; Sagar MB; Doudna JA
Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle
21
2122 2001 JOURNAL OF MOLECULAR BIOLOGY 307(5):1181-1193
Cole KB; Dorit RL
Protein cofactor-dependent acquisition of novel catalytic activity by the RNase p ribonucleoprotein of E-coli
00
1123 2001 JOURNAL OF MOLECULAR BIOLOGY 307(5):1341-1349
Matadeen R; Sergiev P; Leonov A; Pape T; van der Sluis E; Mueller F; Osswald M; von Knoblauch K; Brimacombe R; Bogdanov A; van Heel M; Dontsova O
Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23 S rRNA which differ from the corresponding regions in Haloarcula marismortui
22
1124 2001 JOURNAL OF MOLECULAR BIOLOGY 308(5):919-936
Gendron P; Lemieux S; Major F
Quantitative analysis of nucleic acid three-dimensional structures
20
1125 2001 JOURNAL OF MOLECULAR BIOLOGY 309(2):333-338
Gregory ST; Cate JHD; Dahlberg AE
Streptomycin-resistant and streptomycin-dependent mutants of the extreme thermophile Thermus thermophilus
10
4126 2001 JOURNAL OF MOLECULAR BIOLOGY 310(4):735-753
Elgavish T; Cannone JJ; Lee JC; Harvey SC; Gutell RR
AA.AG@Helix.Ends: A : A and A : G base-pairs at the ends of 16 S and 23 S rRNA helices
42
2127 2001 JOURNAL OF MOLECULAR BIOLOGY 310(4):827-843
Clemons WM; Brodersen DE; McCutcheon JP; May JLC; Carter AP; Morgan-Warren RJ; Wimberly BT; Ramakrishnan V
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Purification, crystallization and structure determination
55
3128 2001 JOURNAL OF MOLECULAR BIOLOGY 310(5):1001-1010
Hansen LH; Kirpekar F; Douthwaite S
Recognition of nucleotide G745 in 23 S ribosomal RNA by the RrmA methyltransferase
22
1129 2001 JOURNAL OF MOLECULAR BIOLOGY 311(3):593-604
Yu LP; Gunasekera AH; Mack J; Olejniczak ET; Chovan LE; Ruan XA; Towne DL; Lerner CG; Fesik SW
Solution structure and function of a conserved protein SP14.3 encoded by an essential Streptococcus pneumoniae gene
00
2130 2001 JOURNAL OF MOLECULAR BIOLOGY 311(4):777-787
Agrawal RK; Linde J; Sengupta J; Nierhaus KH; Frank J
Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation
1110
3131 2001 JOURNAL OF MOLECULAR BIOLOGY 311(5):989-999
Scott WG
Ribozyme catalysis via orbital steering
30
1132 2001 JOURNAL OF MOLECULAR BIOLOGY 312(4):823-832
Huber PW; Rife JP; Moore PB
The structure of helix III in Xenopus oocyte 5 S rRNA: An RNA stem containing a two-nucleotide bulge
11
2133 2001 JOURNAL OF MOLECULAR BIOLOGY 313(1):215-228
Shultzaberger RK; Bucheimer RE; Rudd KE; Schneider TD
Anatomy of Escherichia coli ribosome binding sites
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1134 2001 JOURNAL OF MOLECULAR EVOLUTION 52(2):129-136
Wieden HJ; Wintermeyer W; Rodnina MV
A common structural motif in elongation factor Ts and ribosomal protein L7/12 may be involved in the interaction with elongation factor Tu
21
1135 2001 JOURNAL OF MOLECULAR RECOGNITION 14(4):199-214
Treger M; Westhof E
Statistical analysis of atomic contacts at RNA-protein interfaces
11
4136 2001 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 123(31):7687-7690
Suarez D; Merz KM
Quantum chemical study of ester aminolysis catalyzed by a single adenine: A reference reaction for the ribosomal peptide synthesis
20
1137 2001 JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2 (8):1263-1267
MacMillan AM
From equilibrium to kinetic footprinting of RNA structure
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3138 2001 M S-MEDECINE SCIENCES 17(6-7):771-776
Jean-Jean O; Fourmy D; Haenni AL
The ribosome structure at the atomic scale
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12139 2001 METHODS 25(3):292-302
Gluehmann M; Zarivach R; Bashan A; Harms J; Schluenzen F; Bartels H; Agmon I; Rosenblum G; Pioletti M; Auerbach T; Avila H; Hansen HAS; Franceschi F; Yonath A
Ribosomal crystallography: From poorly, diffracting microcrystals to high-resolution structures
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3140 2001 METHODS 25(3):303-308
Cate JHD
Construction of low-resolution X-ray crystallographic electron density maps of the ribosome
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3141 2001 METHODS 25(3):309-315
Frank J
Ribosomal dynamics explored by cryo-electron microscopy
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2142 2001 METHODS 25(3):351-357
Stelzl U; Nierhaus KH
SERF: In vitro selection of random RNA fragments to identify protein binding sites within large RNAs
00
1143 2001 MOLECULAR AND CELLULAR BIOCHEMISTRY 225(1-2):161-165
Gao X; Ruan KC; Liu WY
Exploration of RNA 3 ' terminal locations in rat ribosome
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5144 2001 MOLECULAR AND CELLULAR BIOLOGY 21(24):8264-8275
Smith MW; Meskauskas A; Wang P; Sergiev PV; Dinman JD
Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae
21
3145 2001 MOLECULAR BIOLOGY 35(4):472-495
Sergiev PV; Dontsova OA; Bogdanov AA
Chemical methods for the structural study of the ribosome: Judgment day
11
3146 2001 MOLECULAR BIOLOGY 35(4):509-520
Mankin AS
Ribosomal antibiotics
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1147 2001 MOLECULAR BIOLOGY 35(4):521-526
Gongadze GM; Perederina AA; Meshcheryakov VA; Fedorov RV; Moskalenko SE; Rak AV; Serganov AA; Shcherbakov DV; Nikonov SV; Garber MB
The Thermus thermophilus 5S rRNA-protein complex: Identification of specific binding sites for proteins L5 and L18 in the 5S rRNA
10
1148 2001 MOLECULAR BIOLOGY 35(4):527-535
Rassokhin TI; Golovin AV; Petrova EV; Spiridonova VA; Karginova OA; Rozhdestvenskii TS; Brosius J; Kopylov AM
Binding of the S7 protein with fragment 926-986/1219-1393 of the 16S rRNA as a key step in the assembly of the small subunit of prokaryotic ribosomes
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1149 2001 MOLECULAR BIOLOGY 35(4):569-574
Maivali U; Saarma U; Remme J
Mutations in the Escherichia coli 23S rRNA increase the rate of peptidyl-tRNA dissociation from the ribosome
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1150 2001 MOLECULAR BIOLOGY 35(4):614-622
Ivanov VI; Beniaminov AD; Mikheev AN; Minyat EE
Why termination tRNAs have not been found? Because they are hidden in the large ribosomal RNA (a hypothesis)
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4151 2001 MOLECULAR BIOLOGY REPORTS 28(2):103-110
Barciszewska MZ; Rapp G; Betzel C; Erdmann VA; Barciszewski J
Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage
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2152 2001 MOLECULAR CELL 7(5):1037-1045
Spahn CMT; Blaha G; Agrawal RK; Penczek P; Grassucci RA; Trieber CA; Connell SR; Taylor DE; Nierhaus KH; Frank J
Localization of the ribosomal protection protein Tet(O) on the ribosome and the mechanism of tetracycline resistance
53
2153 2001 MOLECULAR CELL 8(1):181-188
Gabashvili IS; Gregory ST; Valle M; Grassucci R; Worbs M; Wahl MC; Dahlberg AE; Frank J
The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22
1512
4154 2001 MOLECULAR MICROBIOLOGY 41(5):1091-1099
Poulsen SM; Karlsson M; Johansson LB; Vester B
The pleuromutilin drugs tiamulin and valnemulin bind to the RNA at the peptidyl transferase centre on the ribosome
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Initial sequencing and analysis of the human genome
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3156 2001 NATURE 411(6836):498-501
Polacek N; Gaynor M; Yassin A; Mankin AS
Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide
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8157 2001 NATURE 413(6858):814-821
Schlunzen F; Zarivach R; Harms R; Bashan A; Tocilj A; Albrecht R; Yonath A; Franceschi F
Structural basis for the interaction of antibiotics with the peptidyl transferase centre in eubacteria
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10158 2001 NATURE REVIEWS MOLECULAR CELL BIOLOGY 2(7):514-520
Lafontaine DLJ; Tollervey D
The function and synthesis of ribosomes
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1159 2001 NATURE STRUCTURAL BIOLOGY 8(4):339-343
Doherty EA; Batey RT; Masquida B; Doudna JA
A universal mode of helix packing in RNA
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2160 2001 NATURE STRUCTURAL BIOLOGY 8(11):909-909
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Whither crystallography
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1161 2001 NATURE STRUCTURAL BIOLOGY 8(11):968-973
Yang XJ; Gerczei T; Glover L; Correll CC
Crystal structures of restrictocin-inhibitor complexes with implications for RNA recognition and base flipping
30
1162 2001 NATURE STRUCTURAL BIOLOGY 8(12):1064-1068
Ennifar E; Walter P; Ehresmann B; Ehresmann C; Dumas P
Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site
40
1163 2001 NUCLEIC ACIDS RESEARCH 29(1):175-177
Wuyts J; De Rijk P; Van de Peer Y; Winkelmans T; De Wachter R
The European Large Subunit Ribosomal RNA Database
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1164 2001 NUCLEIC ACIDS RESEARCH 29(2):455-463
Jaeger L; Westhof E; Leontis NB
TectoRNA: modular assembly units for the construction of RNA nano-objects
51
2165 2001 NUCLEIC ACIDS RESEARCH 29(3):710-715
O'Connor M; Lee WCM; Mankad A; Squires CL; Dahlberg AE
Mutagenesis of the peptidyltransferase center of 23S rRNA: the invariant U2449 is dispensable
50
1166 2001 NUCLEIC ACIDS RESEARCH 29(5):1125-1131
Kim YG; Maas S; Rich A
Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2
30
2167 2001 NUCLEIC ACIDS RESEARCH 29(8):1703-1714
Grishin NV
Treble clef finger - a functionally diverse zinc-binding structural motif
40
1168 2001 NUCLEIC ACIDS RESEARCH 29(10):2106-2116
Cote CA; Peculis BA
Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast
50
2169 2001 NUCLEIC ACIDS RESEARCH 29(18):3705-3727
Pingoud A; Jeltsch A
Structure and function of type II restriction endonucleases
230
2170 2001 NUCLEIC ACIDS RESEARCH 29(22):4724-4735
Macke TJ; Ecker DJ; Gutell RR; Gautheret D; Case DA; Sampath R
RNAMotif, an RNA secondary structure definition and search algorithm
21
3171 2001 NUCLEIC ACIDS RESEARCH 29(24):5017-5028
Wuyts J; Van de Peer Y; Wachter RD
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
22
4172 2001 NUCLEIC ACIDS RESEARCH 29(24):5067-5070
Kubarenko AV; Sergiev PV; Bogdanov AA; Brimacombe R; Dontsova OA
A protonated base pair participating in rRNA tertiary structural interactions
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5173 2001 NUCLEIC ACIDS RESEARCH 29(24):5129-5139
Nagaswamy U; Gao XL; Martinis SA; Fox GE
NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop
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2174 2001 NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 20(4-7):383-384
Trung NQN; Strazewski P; Olsson M; Ehrenberg M
The conformational space of nascent peptide-accepting 3 '- aminoacyl ribonucleos(t)ides: H-1 NMR data and ab initio calculations of puromycin and some synthetic analogs
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1175 2001 ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE 31(3):241-248
Wen K; Orgel LE
The specificity of peptide chain extension by N- carboxyanhydrides
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2176 2001 ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE 31(6):511-526
Larkin DC; Martinis SA; Roberts DJ; Fox GE
Ala-His mediated peptide bond formation revisited
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2177 2001 PEPTIDES 22(10):1661-1668
Tenson T; Mankin AS
Short peptides conferring resistance to macrolide antibiotics
10
1178 2001 PLANT PHYSIOLOGY 127(2):398-415
Barakat A; Szick-Miranda K; Chang IF; Guyot R; Blanc G; Cooke R; Delseny M; Bailey-Serres J
The organization of cytoplasmic ribosomal protein genes in the arabidopsis genome
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5179 2001 POLISH JOURNAL OF CHEMISTRY 75(12):1807-1816
Giel-Pietraszuk M; Barciszewski J
The ribosome and the spliceosome are the true ribozymes
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3180 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(4):1393-1397
Tamura K; Schimmel P
Oligonucleotide-directed peptide synthesis in a ribosome- and ribozyme-free system
62
3181 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(4):1489-1494
Shih I; Been MD
Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage
164
1182 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(7):3720-3725
Blanchard SC; Puglisi JD
Solution structure of the A loop of 23S ribosomal RNA
66
2183 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(7):3726-3731
Belova L; Tenson T; Xiong LQ; McNicholas PM; Mankin AS
A novel site of antibiotic action in the ribosome: Interaction of evernimicin with the large ribosomal subunit
75
2184 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(8):4355-4360
Fang XW; Golden BL; Littrell K; Shelton V; Thiyagarajan P; Pan T; Sosnick TR
The thermodynamic origin of the stability of a thermophilic ribozyme
31
2185 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(9):4899-4903
Nissen P; Ippolito JA; Ban N; Moore PB; Steitz TA
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
2420
2186 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(16):8997-9001
Gong F; Ito K; Nakamura Y; Yanofsky C
The mechanism of tryptophan induction of tryptophanase operon expression: Tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNA(Pro)
52
4187 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(16):9002-9007
Thompson J; Kim DF; O'Connor M; Lieberman KR; Bayfield MA; Gregory ST; Green R; Noller HF; Dahlberg AE
Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit
2825
2188 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(18):10037-10041
Baker NA; Sept D; Joseph S; Holst MJ; McCammon JA
Electrostatics of nanosystems: Application to microtubules and the ribosome
123
6189 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(18):10096-10101
Bayfield MA; Dahlberg AE; Schulmeister U; Dorner S; Barta A
A conformational change in the ribosomal peptidyl transferase center upon active/inactive transition
1615
1190 2001 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(19):10648-10653
Liu Y; Ogata CM; Hendrickson WA
Multiwavelength anomalous diffraction analysis at the M absorption edges of uranium
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4191 2001 PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY 75(1-2):75-120
Lahav N; Nir S; Elitzur AC
The emergence of life on Earth
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6192 2001 PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY 75(3):121-164
Ruprecht J; Nield J
Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction
20
3193 2001 PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 70 70():291-334
Vortler S; Putz J; Giege R
Manipulation of tRNA properties by structure-based and combinatorial in vitro approaches
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1194 2001 PROTEIN EXPRESSION AND PURIFICATION 22(2):225-233
Ayub MJ; Levin MJ; Aguilar CF
Overexpression and refolding of the hydrophobic ribosomal P0 protein from Trypanosoma cruzi: A component of the P1/P2/P0 complex
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2195 2001 PROTEIN SCIENCE 10(12):2426-2438
Li W; Hoffman DW
Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy
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1196 2001 PROTEINS-STRUCTURE FUNCTION AND GENETICS 44(3):200-211
Laurents D; Perez-Canadillas JM; Santoro J; Rico M; Schell D; Pace CN; Bruix M
Solution structure and dynamics of ribonuclease Sa
20
1197 2001 PROTEINS-STRUCTURE FUNCTION AND GENETICS 44(4):479-483
Zetina CR
A conserved helix-unfolding motif in the naturally unfolded proteins
20
1198 2001 PROTEOMICS 1(11):1390-1404
Yanagida M; Shimamoto A; Nishikawa K; Furuichi Y; Isobe T; Takahashi N
Isolation and proteomic characterization of the major proteins of the nucleolin-binding ribonucleoprotein complexes
50
1199 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(1):54-63
Bocchetta M; Xiong L; Shah S; Mankin AS
Interactions between 23S rRNA and tRNA in the ribosomal E site
21
2200 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(4):499-512
Leontis NB; Westhof E
Geometric nomenclature and classification of RNA base pairs
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Cited
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Nodes / AuthorsGCSLCS
2201 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(4):537-545
O'Rear JL; Wang SL; Feig AL; Beigelman L; Uhlenbeck OC; Herschlag D
Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations
220
3202 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(4):546-552
Curtis EA; Bartel DP
The hammerhead cleavage reaction in monovalent cations
214
1203 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(4):598-609
Stelzl U; Nierhaus KH
A short fragment of 23S rRNA containing the binding sites for two ribosomal proteins, L24 and L4, is a key element for rRNA folding during early assembly
11
2204 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(5):661-670
Beales LP; Rowlands DJ; Holzenburg A
The internal ribosome entry site (IRES) of hepatitis C virus visualized by electron microscopy
51
2205 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(5):692-701
Nakashima T; Yao M; Kawamura S; Iwasaki K; Kimura M; Tanaka I
Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding
44
2206 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(5):702-709
Tsu CA; Kossen K; Uhlenbeck OC
The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA
41
1207 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(7):990-998
Gutgsell NS; Del Campo M; Raychaudhuri S; Ofengand J
A second function for pseudouridine syntheses: A point mutant of RluD unable to form pseudouridines 1911, 1915, and 1917 in Escherichia coli 23S ribosomal RNA restores normal growth to an RluD-minus strain
114
3208 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(8):1055-1067
Woese CR
Translation: In retrospect and prospect
42
1209 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(8):1076-1083
Thompson J; Tapprich WE; Munger C; Dahlberg AE
Staphylococcus aureus domain V functions in Escherichia coli ribosomes provided a conserved interaction with domain IV is restored
00
2210 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(8):1173-1179
La Teana A; Gualerzi CO; Dahlberg AE
Initiation factor IF 2 binds to the alpha-sarcin loop and helix 89 of Escherichia coli 23S ribosomal RNA
40
3211 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(9):1317-1334
Daugeron MC; Kressler D; Linder P
Dbp9p, a putative ATP-dependent RNA helicase involved in 60S- ribosomal-subunit biogenesis, functionally interacts with Dbp6p
20
5212 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(10):1365-1369
Xiong LQ; Polacek N; Sander P; Bottger EC; Mankin A
pKa of adenine 2451 in the ribosomal peptidyl transferase center remains elusive
76
7213 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(10):1403-1415
Muth GW; Chen L; Kosek AB; Strobel SA
pH-dependent conformational flexibility within the ribosomal peptidyl transferase center
85
2214 2001 RNA-A PUBLICATION OF THE RNA SOCIETY 7(12):1683-1692
Ivanov V; Beniaminov A; Mikheyev A; Minyat E
A mechanism for stop codon recognition by the ribosome: A bioinformatic approach
00
1215 2001 SCIENCE 291(5510):1959-1962
Spahn CMT; Kieft JS; Grassucci RA; Penczek PA; Zhou KH; Doudna JA; Frank J
Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit
325
3216 2001 SCIENCE 292(5518):868-869
Dahlberg AE
Ribosome structure - The ribosome in action
10
2217 2001 SCIENCE 292(5518):883-896
Yusupov MM; Yusupova GZ; Baucom A; Lieberman K; Earnest TN; Cate JHD; Noller HF
Crystal structure of the ribosome at 5.5 angstrom resolution
13591
2218 2001 SCIENCE 292(5518):897-902
Ogle JM; Brodersen DE; Clemons WM; Tarry MJ; Carter AP; Ramakrishnan V
Recognition of cognate transfer RNA by the 30S ribosomal subunit
5935
4219 2001 SCIENCE 293(5529):519-520
Stevens RC; Wilson IA
Industrializing structural biology
50
4220 2001 SCIENTIST 15(22):24-25
Russo E
Hot papers - The ribosomal function comes into view - Comment
00
2221 2001 SCIENTIST 15(12):28-29
Smutzer G
X-ray vision in structural genomics
00
3222 2001 STRUCTURE 9(8):647-658
Vicens Q; Westhof E
Crystal structure of paromomycin docked into the eubacterial ribosomal decoding a site
122
6223 2001 STRUCTURE 9(9):751-758
Culver GM
Meanderings of the mRNA through the ribosome
00
2224 2001 TRENDS IN BIOCHEMICAL SCIENCES 26(2):124-130
Rodnina MV; Wintermeyer W
Ribosome fidelity: tRNA discrimination, proofreading and induced fit
33
1225 2001 TRENDS IN BIOCHEMICAL SCIENCES 26(9):566-572
Trakselis MA; Mayer MU; Ishmael FT; Roccasecca RM; Benkovic SJ
Dynamic protein interactions in the bacteriophage T4 replisome
10
6226 2001 TRENDS IN BIOCHEMICAL SCIENCES 26(11):653-656
Brosius J
tRNAs in the spotlight during protein biosynthesis
10
2227 2001 TRENDS IN BIOCHEMICAL SCIENCES 26(12):705-709
Roll-Mecak A; Shin BS; Dever TE; Burley SK
Engaging the ribosome: universal IFs of translation
10
1228 2001 TRENDS IN CELL BIOLOGY 11(3):112-115
Potter MD; Seiser RM; Nicchitta CV
Ribosome exchange revisited: a mechanism for translation- coupled ribosome detachment from the ER membrane
50
1229 2002 ACCOUNTS OF CHEMICAL RESEARCH 35(6):404-412
Brunger AT; Adams PD
Molecular dynamics applied to X-ray structure refinement
00
5230 2002 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 58():668-671
Mandelman D; Gonzalo P; Lavergne JP; Corbier C; Reboud JP; Haser R
Crystallization and preliminary X-ray study of an N-terminal fragment of rat liver ribosomal P2 protein
10
2231 2002 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 58():1023-1029
Nevskaya N; Tishchenko S; Paveliev M; Smolinskaya Y; Fedorov R; Piendl W; Nakamura Y; Toyoda T; Garber M; Nikonov S
Structure of ribosomal protein L1 from Methanococcus thermolithotrophicus. Functionally important structural invariants on the L1 surface
00
1232 2002 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 58():1129-1137
Nureki O; Shirouzu M; Hashimoto K; Ishitani R; Terada T; Tamakoshi M; Oshima T; Chijimatsu M; Takio K; Vassylyev DG; Shibata T; Inoue Y; Kuramitsu S; Yokoyama S
An enzyme with a deep trefoil knot for the active-site architecture
00
2233 2002 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 58():1700-1703
Vallazza M; Banumathi S; Perbandt M; Moore K; DeLucas L; Betzel C; Erdmann VA
Crystallization and structure analysis of Thermus flavus 5S rRNA helix B
00
9234 2002 ANNUAL REVIEW OF BIOCHEMISTRY 71():887-917
Shih IH; Been MD
Catalytic strategies of the hepatitis delta virus ribozymes
10
11235 2002 ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 31():257-273
Yonath A
The search and its outcome: High-resolution structures of ribosomal particles from mesophilic, thermophilic, and halophilic bacteria at various functional states
11
4236 2002 ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 31():303-319
Frank J
Single-particle imaging of macromolecules by cryo-electron microscopy
00
2237 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(1):55-61
Bacchi CJ; Weiss LM; Lane S; Frydman B; Valasinas A; Reddy V; Sun JS; Marton LJ; Khan IA; Moretto M; Yarlett N; Wittner M
Novel synthetic polyamines are effective in the treatment of experimental microsporidiosis, an opportunistic AIDS-Associated infection
00
2238 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(1):125-131
Canu A; Malbruny B; Coquemont M; Davies TA; Appelbaum PC; Leclercq R
Diversity of ribosomal mutations conferring resistance to macrolides, clindamycin, streptogramin, and telithromycin in Streptococcus pneumoniae
104
2239 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(5):1295-1301
Low DE; de Azavedo J; Weiss K; Mazzulli T; Kuhn M; Church D; Forward K; Zhanel G; Simor A
Antimicrobial resistance among clinical isolates of Streptococcus pneumoniae in Canada during 2000
20
4240 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(6):1629-1633
Liu MF; Douthwaite S
Activity of the ketolide telithromycin is refractory to erm monomethylation of bacterial rRNA
00
4241 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(7):2200-2207
Malbruny B; Canu A; Bozdogan B; Fantin B; Zarrouk V; Dutka-Malen S; Feger C; Leclercq R
Resistance to quinupristin-dalfopristin due to mutation of L22 ribosomal protein in Staphylococcus aureus
10
7242 2002 ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 46(9):2727-2734
Leclercq R; Courvalin P
Resistance to macrolides and related antibiotics in Streptococcus pneumoniae
00
3243 2002 ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 403(1):63-70
Kramer G; Ramachandiran V; Horowitz PM; Hardesty B
The molecular chaperone DnaK is not recruited to translating ribosomes that lack trigger factor
00
2244 2002 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 290(1):339-348
Kanesaki Y; Suzuki I; Allakhverdiev SI; Mikami K; Murata N
Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp PCC 6803
00
5245 2002 BIOCHEMICAL JOURNAL 363():553-561
Woestenenk EA; Gongadze GM; Shcherbakov DV; Rak AV; Garber MB; Hard T; Berglund H
The solution structure of ribosomal protein L18 from Thermus thermophilus reveals a conserved RNA-binding fold
00
4246 2002 BIOCHEMICAL SOCIETY TRANSACTIONS 30():133-140
Marquez V; Wilson DN; Nierhaus KH
Functions and interplay of the tRNA-binding sites of the ribosome
00
3247 2002 BIOCHEMICAL SOCIETY TRANSACTIONS 30():140-145
Gallego J; Varani G
The hepatitis C virus internal ribosome-entry site: A new target for antiviral research
00
1248 2002 BIOCHEMISTRY 41(3):869-880
Mathews DH; Turner DH
Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops
10
3249 2002 BIOCHEMISTRY 41(8):2516-2525
Szewczak AA; Kosek AB; Piccirilli JA; Strobel SA
Identification of an active site ligand for a group I ribozyme catalytic metal ion
10
4250 2002 BIOCHEMISTRY 41(11):3667-3675
Oyelere AK; Kardon JR; Strobel SA
pKa perturbation in genomic hepatitis delta virus ribozyme catalysis evidenced by nucleotide analogue interference mapping
31
3251 2002 BIOCHEMISTRY 41(11):3693-3702
Polach KJ; Uhlenbeck OC
Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
00
2252 2002 BIOCHEMISTRY 41(16):5093-5103
Benton CB; King J; Clark PL
Characterization of the protrimer intermediate in the folding pathway of the interdigitated beta-helix tailspike protein
10
2253 2002 BIOCHEMISTRY 41(21):6573-6582
Dunker AK; Brown CJ; Lawson JD; Iakoucheva LM; Obradovic Z
Intrinsic disorder and protein function
00
3254 2002 BIOCHEMISTRY 41(25):8113-8119
Disney MD; Turner DH
Molecular recognition by the Candida albicans group I intron: Tertiary interactions with an imino G center dot A pair facilitate binding of the 5 ' exon and lower the K-M for guanosine
00
2255 2002 BIOCHEMISTRY 41(33):10406-10417
Znosko BM; Silvestri SB; Volkman H; Boswell B; Serra MJ
Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges
00
6256 2002 BIOCHEMISTRY 41(33):10426-10438
Soukup JK; Minakawa N; Matsuda A; Strobel SA
Identification of A-minor tertiary interactions within a bacterial group I intron active site by 3-deazaadenosine interference mapping
00
1257 2002 BIOCHEMISTRY 41(39):11517-11524
Tang L; Johnson JE
Structural biology of viruses by the combination of electron cryomicroscopy and X-ray crystallography
00
13258 2002 BIOCHEMISTRY 41(39):11602-11610
Polacek N; Swaney S; Shinabarger D; Mankin AS
SPARK - A novel method to monitor ribosomal peptidyl transferase activity
00
5259 2002 BIOCHEMISTRY 41(41):12520-12528
Mohr D; Wintermeyer W; Rodnina MV
GTPase activation of elongation factors Tu and G on the ribosome
00
1260 2002 BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION 30(1):21-26
Richardson DC; Richardson JS
Teaching molecular 3-D literacy
10
10261 2002 BIOCHEMISTRY-MOSCOW 67(3):372-382
Kopylov AM
X-ray analysis of ribosomes: the static of the dynamic
00
1262 2002 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1574(3):255-261
DeLabre ML; Kessl J; Karamanou S; Trumpower BL
RPL29 codes for a non-essential protein of the 60S ribosomal subunit in Saccharomyces cerevisiae and exhibits synthetic lethality with mutations in genes for proteins required for subunit coupling
00
8263 2002 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1577(1):53-62
Larsson SL; Sloma MS; Nygard O
Conformational changes in the structure of domains II and V of 28S rRNA in ribosomes treated with the translational inhibitors ricin or alpha-sarcin
00
2264 2002 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1577(2):175-190
Gnatt A
Elongation by RNA polymerase II: structure-function relationship
10
5265 2002 BIOMACROMOLECULES 3(1):69-83
He QC; Zhou JM; Zhou DM; Nakamatsu Y; Baba T; Taira K
Comparison of metal-ion-dependent cleavages of RNA by a DNA enzyme and a hammerhead ribozyme
00
7266 2002 BIOORGANIC CHEMISTRY 30(3):163-187
Seo HS; Cooperman BS
Large-scale motions within ribosomal 50S subunits as demonstrated using photolabile oligonucleotides
00
1267 2002 BIOPHYSICAL CHEMISTRY 96(2-3):153-161
Blaha G; Burkhardt N; Nierhaus KH
Formation of 70S ribosomes: large activation energy is required for the adaptation of exclusively the small ribosomal subunit
00
2268 2002 BIOPHYSICAL JOURNAL 82(1):2491-
Moore PB; Hansen J; Klein DJ; Schmeing TM; Steitz TA
Structure and function in the large ribosomal subunit
00
2269 2002 BIOPHYSICAL JOURNAL 82(1):2492-
Gao HX; Sengupta J; VanRoey P; Korostelev A; Chapman MS; Frank J
Toward a molecular understanding of the ratchet movement
00
3270 2002 BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 66(1):103-109
Iwasaki K; Kikukawa S; Kawamura S; Kouzuma Y; Tanaka I; Kimura M
On the interaction of ribosomal protein L5 with 5S rRNA
00
5271 2002 BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 66(3):682-684
Hayashi T; Tahara M; Iwasaki K; Kouzuma Y; Kimura M
Requirement for C-terminal extension to the RNA binding domain for efficient RNA binding by ribosomal protein l2
00
17272 2002 CELL 108(4):557-572
Ramakrishnan V
Ribosome structure and the mechanism of translation
103
5273 2002 CELL 108(5):629-636
Nakatogawa H; Ito K
The ribosomal exit tunnel functions as a discriminating gate
62
7274 2002 CELL 110(6):665-668
Green R; Lorsch JR
The path to perdition is paved with protons
00
6275 2002 CELL 111(1):129-140
Lancaster L; Kiel MC; Kaji A; Noller HF
Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing
00
4276 2002 CHEMISTRY & BIOLOGY 9(6):747-755
Vicens Q; Westhof E
Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site
00
4277 2002 CHEMISTRY & BIOLOGY 9(8):854-855
Bevilacqua PC
Battle for the bulge: Directing small molecules to DNA and RNA defects
00
3278 2002 CURRENT MEDICINAL CHEMISTRY 9(9):929-939
Ye XS; Zhang LH
Aminoglycoside mimetics as small-molecule drugs targeting RNA
00
5279 2002 CURRENT OPINION IN PHARMACOLOGY 2(5):493-500
Nilius AM; Ma ZK
Ketolides: the future of the macrolides?
00
15280 2002 CURRENT OPINION IN PHARMACOLOGY 2(5):501-506
Knowles DJC; Foloppe N; Matassova NB; Murchie AIH
The bacterial ribosome, a promising focus for structure-based drug design
00
4281 2002 CURRENT OPINION IN STRUCTURAL BIOLOGY 12(1):72-81
Wild K; Weichenrieder O; Strub K; Sinning I; Cusack S
Towards the structure of the mammalian signal recognition particle
30
3282 2002 CURRENT OPINION IN STRUCTURAL BIOLOGY 12(2):154-160
Elcock AH
Modeling supramolecular assemblages
00
3283 2002 CURRENT OPINION IN STRUCTURAL BIOLOGY 12(3):289-295
Fedor MJ
The role of metal ions in RNA catalysis
10
7284 2002 CURRENT OPINION IN STRUCTURAL BIOLOGY 12(3):301-310
Gutell RR; Lee JC; Cannone JJ
The accuracy of ribosomal RNA comparative structure models
00
25285 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):1-53
Wilson DN; Blaha G; Connell SR; Ivanov PV; Jenke H; Stelzl U; Teraoka Y; Nierhaus KH
Protein synthesis at atomic resolution: Mechanistics of translation in the light of highly resolved structures for the ribosome
11
13286 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):67-78
Yonath A
High-resolution structures of large ribosomal subunits from mesophilic eubacteria and halophilic archaea at various functional states
00
5287 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):79-91
Stark H
Three-dimensional electron cryomicroscopy of ribosomes
00
8288 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):93-106
Wahl MC; Moller W
Structure and function of the acidic ribosomal stalk proteins
00
2289 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):107-119
Boelens R; Gualerzi CO
Structure and function of bacterial initiation factors
00
6290 2002 CURRENT PROTEIN & PEPTIDE SCIENCE 3(1):133-141
Kristensen O; Laurberg M; Liljas A; Selmer M
Is tRNA binding or tRNA mimicry mandatory for translation factors?
00
4291 2002 DRUGS 62(12):1771-1804
Zhanel GG; Walters M; Noreddin A; Vercaigne LM; Wierzbowski A; Embil JM; Gin AS; Douthwaite S; Hoban DJ
The ketolides - A critical review
00
4292 2002 EMBO JOURNAL 21(5):1139-1147
Pintard L; Bujnicki JM; Lapeyre B; Bonnerot C
MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase
20
3293 2002 EMBO JOURNAL 21(7):1845-1854
Dong G; Nowakowski J; Hoffman DW
Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue
10
5294 2002 EMBO JOURNAL 21(13):3557-3567
Valle M; Sengupta J; Swami NK; Grassucci RA; Burkhardt N; Nierhaus KH; Agrawal RK; Frank J
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process
21
1295 2002 EMBO JOURNAL 21(17):4641-4653
Steiner T; Kaiser JT; Marinkovic S; Huber R; Wahl MC
Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities
00
2296 2002 EMBO JOURNAL 21(17):4691-4698
Hiley SL; Sood VD; Fan J; Collins RA
4-thio-U cross-linking identifies the active site of the VS ribozyme
00
5297 2002 EMBO JOURNAL 21(19):5281-5291
Waldsich C; Masquida B; Westhof E; Schroeder R
Monitoring intermediate folding states of the td group I intron in vivo
00
1298 2002 EXPERT OPINION ON THERAPEUTIC PATENTS 12(9):1367-1374
Griffey RH; Swayze EE
RNA-targeted therapeutics: prospects and promise
00
3299 2002 FEBS LETTERS 514(1):2-10
Spirin AS
Ribosome as a molecular machine
00
3300 2002 FEBS LETTERS 514(1):11-16
Noller HF; Yusupov MM; Yusupova GZ; Baucom A; Cate JHD
Translocation of tRNA during protein synthesis
42

Cited
nodes
Nodes / AuthorsGCSLCS
3301 2002 FEBS LETTERS 514(1):17-25
Ofengand J
Ribosomal RNA pseudouridines and pseudouridine synthases
10
2302 2002 FEBS LETTERS 514(1):60-66
Kirillov SV; Wower J; Hixson SS; Zimmermann RA
Transit of tRNA through the Escherichia coli ribosome: cross- linking of the 3 ' end of tRNA to ribosomal proteins at the P and E sites
00
2303 2002 FEBS LETTERS 514(1):90-95
Szkaradkiewicz K; Nanninga M; Nesper-Brock M; Gerrits M; Erdmann VA; Sprinzl M
RNA aptamers directed against release factor 1 from Thermus thermophilus
00
1304 2002 FEBS LETTERS 525(1-3):88-92
Shiryaev VM; Selivanova OM; Hartsch T; Nazimov IV; Spirin AS
Ribosomal protein S1 from Thermus thermophilus: its detection, identification and overproduction
00
3305 2002 FEBS LETTERS 525(1-3):174-175
Bujnicki JM; Feder M; Rychlewski L; Fischer D
Errors in the D-radiodurans large ribosomal subunit structure detected by protein fold-recognition and structure validation tools
00
3306 2002 FEBS LETTERS 525(1-3):176-178
Harms J; Schluenzen F; Zarivach R; Bashan A; Bartels H; Agmon I; Yonath A
Protein structure: experimental and theoretical aspects
00
2307 2002 GENOME RESEARCH 12(3):379-390
Yoshihama M; Uechi T; Asakawa S; Kawasaki K; Kato S; Higa S; Maeda N; Minoshima S; Tanaka T; Shimizu N; Kenmochi N
The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes
20
2308 2002 INDIAN JOURNAL OF CHEMISTRY SECTION A-INORGANIC BIO-INORGANIC PHYSICAL THEORETICAL & ANALYTICAL CHEMISTRY 41(1):54-64
Sosnick T; Pan T; Fang XW; Shelton V; Thiyagarajan P; Littrel K
Metal ions and the thermodynamics and kinetics of tertiary RNA folding
00
2309 2002 INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY 34(3):263-268
He WJ; Tang SA; Liu WY
In vitro interaction of eukaryotic elongation factor 2 with synthetic oligoribonucleotide that mimics GTPase domain of rat 28S ribosomal RNA
00
3310 2002 JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY 49(6):935-939
Malbruny B; Nagai K; Coquemont M; Bozdogan B; Andrasevic AT; Hupkova H; Leclercq R; Appelbaum PC
Resistance to macrolides in clinical isolates of Streptococcus pyogenes due to ribosomal mutations
00
3311 2002 JOURNAL OF BACTERIOLOGY 184(18):5052-5057
Arkov AL; Hedenstierna KOF; Murgola EJ
Mutational evidence for a functional connection between two domains of 23S rRNA in translation termination
00
7312 2002 JOURNAL OF BACTERIOLOGY 184(20):5733-5745
Ma J; Campbell A; Karlin S
Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures
00
1313 2002 JOURNAL OF BIOCHEMISTRY 131(4):571-578
Giel-Pietraszuk M; Barciszewska MZ
Additivity of interactions of zinc finger motifs in specific recognition of RNA
00
2314 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(6):3857-3862
Uchiumi T; Honma S; Nomura T; Dabbs ER; Hachimori A
Translation elongation by a hybrid ribosome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts
22
3315 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(11):8835-8840
Agarwalla S; Kealey JT; Santi DV; Stroud RM
Characterization of the 23 S ribosomal RNA m(5)U1939 methyltransferase from Escherichia coli
00
9316 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(21):19095-19105
Schafer MA; Tastan AO; Patzke S; Blaha G; Spahn CMT; Wilson DN; Nierhaus KH
Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit
00
3317 2002 JOURNAL OF BIOLOGICAL CHEMISTRY 277(38):35712-35719
Guglielmi B; Werner M
The yeast homolog of human PinX1 is involved in rRNA and small nucleolar RNA maturation, not in telomere elongation inhibition
00
4318 2002 JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY 7(7-8):679-690
Pyle AM
Metal ions in the structure and function of RNA
00
1319 2002 JOURNAL OF GENERAL VIROLOGY 83():2417-2426
Wengler G; Wengler G
In vitro analysis of factors involved in the disassembly of Sindbis virus cores by 60S ribosomal subunits identifies a possible role of low pH
00
1320 2002 JOURNAL OF MAGNETIC RESONANCE 157(2):277-285
Weber A; Schiemann O; Bode B; Prisner TF
PELDOR at S- and X-band frequencies and the separation of exchange coupling from dipolar coupling
00
3321 2002 JOURNAL OF MOLECULAR BIOLOGY 316(3):475-488
Dresios J; Chan YL; Wool IG
The role of the zinc finger motif and of the residues at the amino terminus in the function of yeast ribosomal protein YL37a
00
5322 2002 JOURNAL OF MOLECULAR BIOLOGY 316(3):725-768
Brodersen DE; Clemons WM; Carter AP; Wimberly BT; Ramakrishnan V
Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
41
1323 2002 JOURNAL OF MOLECULAR BIOLOGY 317(2):191-203
Mathews DH; Turner DH
Dynalign: An algorithm for finding the secondary structure common to two RNA sequences
00
4324 2002 JOURNAL OF MOLECULAR BIOLOGY 317(4):559-575
Chadalavada DM; Senchak SE; Bevilacqua PC
The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots
10
1325 2002 JOURNAL OF MOLECULAR BIOLOGY 318(2):287-303
Singh RN; Saldanha RJ; D'Souza LM; Lambowitz AM
Binding of a group II intron-encoded reverse transcriptase/maturase to its high affinity intron RNA binding site involves sequence-specific recognition and autoregulates translation
00
3326 2002 JOURNAL OF MOLECULAR BIOLOGY 318(3):637-649
Al-Hashimi HM; Gorin A; Majumdar A; Gosser Y; Patel DJ
Towards structural Genomics of RNA: Rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings
00
3327 2002 JOURNAL OF MOLECULAR BIOLOGY 318(4):963-973
Conn GL; Gittis AG; Lattman EE; Misra VK; Draper DE
A compact RNA tertiary structure contains a buried Backbone-K+ complex
00
3328 2002 JOURNAL OF MOLECULAR BIOLOGY 320(3):455-474
Tamura M; Holbrook SR
Sequence and structural conservation in RNA ribose zippers
00
12329 2002 JOURNAL OF MOLECULAR BIOLOGY 321(2):215-234
Mears JA; Cannone JJ; Stagg SM; Gutell RR; Agrawal RK; Harvey SC
Modeling a minimal ribosome based on comparative sequence analysis
00
4330 2002 JOURNAL OF MOLECULAR BIOLOGY 322(2):273-279
Thompson J; O'Connor M; Mills JA; Dahlberg AE
The protein synthesis inhibitors, oxazolidinones and chloramphenicol, cause extensive translational inaccuracy in vivo
00
7331 2002 JOURNAL OF MOLECULAR BIOLOGY 322(3):635-644
Davydova N; Streltsov V; Wilce M; Liljas A; Garber M
L22 ribosomal protein and effect of its mutation on ribosome resistance to erythromycin
00
3332 2002 JOURNAL OF MOLECULAR EVOLUTION 54(3):333-345
Caetano-Anolles G
Evolved RNA secondary structure and the rooting of the universal tree of life
10
3333 2002 JOURNAL OF MOLECULAR EVOLUTION 55(4):460-469
Misof B; Anderson CL; Buckley TR; Erpenbeck D; Rickert A; Misof K
An empirical analysis of mt 16S rRNA covarion-like evolution in insects: Site-specific rate variation is clustered and frequently detected
00
2334 2002 JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM 580():1-8
Ferreira R
Molecular chirality and the constitution of our biota
00
1335 2002 JOURNAL OF PHYSICAL CHEMISTRY B 106(19):5075-5085
Sherer EC; Cramer CJ
Internal loop-helix coupling in the dynamics of the RNA duplex (GC*C*AGUUCGCUGGC)(2)
00
2336 2002 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 124(13):3238-3244
Stuhlmann F; Jaschke A
Characterization of an RNA active site: Interactions between a Diels-Alderase ribozyme and its substrates and products
20
4337 2002 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 124(17):4617-4622
Morii T; Hagihara M; Sato SI; Makino K
In vitro selection of ATP-binding receptors using a ribonucleopeptide complex
00
4338 2002 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 124(38):11307-11314
Kumar JK; Oliver JS
Proximity effects in monolayer films: Kinetic analysis of amide bond formation at the air-water interface using H-1 NMR spectroscopy
00
3339 2002 MEDECINE ET MALADIES INFECTIEUSES 32():32S-44S
Canu A; Leclercq R
Macrolides: a diversity of resistance types
00
3340 2002 METHODS 26(2):170-181
Urlaub H; Hartmuth K; Luhrmann R
A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles
00
1341 2002 MOLECULAR BIOLOGY AND EVOLUTION 19(5):631-639
Matte-Tailliez O; Brochier C; Forterre P; Philippe H
Archaeal phylogeny based on ribosomal proteins
30
3342 2002 MOLECULAR CELL 9(5):1125-1131
Fredrick K; Noller HF
Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
11
9343 2002 MOLECULAR CELL 10(1):117-128
Hansen JL; Ippolito JA; Ban N; Nissen P; Moore PB; Steitz TA
The structures of four macrolide antibiotics bound to the large ribosomal subunit
00
9344 2002 MOLECULAR CELL 10(2):339-346
Katunin VI; Muth GW; Strobel SA; Wintermeyer W; Rodnina MV
Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome
11
7345 2002 MOLECULAR MICROBIOLOGY 44(1):195-204
Liu MF; Douthwaite S
Methylation at nucleotide G745 or G748 in 23S rRNA distinguishes Gram-negative from Gram-positive bacteria
00
1346 2002 MOLECULAR MICROBIOLOGY 45(5):1421-1432
Blindauer CA; Harrison MD; Robinson AK; Parkinson JA; Bowness PW; Sadler PJ; Robinson NJ
Multiple bacteria encode metallothioneinsand SmtA-like zinc fingers
00
1347 2002 NATURE 415(6868):152-155
Hamad-Schifferli K; Schwartz JJ; Santos AT; Zhang SG; Jacobson JM
Remote electronic control of DNA hybridization through inductive coupling to an attached metal nanocrystal antenna
30
2348 2002 NATURE 416(6878):281-285
Simonson AB; Lake JA
The transorientation hypothesis for codon recognition during protein synthesis
32
3349 2002 NATURE 418(6894):214-221
Joyce GF
The antiquity of RNA-based evolution
11
10350 2002 NATURE 418(6894):222-228
Doudna JA; Cech TR
The chemical repertoire of natural ribozymes
21
16351 2002 NATURE 418(6894):229-235
Moore PB; Steitz TA
The involvement of RNA in ribosome function
00
3352 2002 NATURE 419(6903):171-174
Kramer G; Rauch T; Rist W; Vorderwulbecke S; Patzelt H; Schulze-Specking A; Ban N; Deuerling E; Bukau B
L23 protein functions as a chaperone docking site on the ribosome
10
2353 2002 NATURE REVIEWS MOLECULAR CELL BIOLOGY 3(1):50-60
Minsky A; Shimoni E; Frenkiel-Krispin D
Stress, order and survival
00
4354 2002 NATURE STRUCTURAL BIOLOGY 9(2):85-87
Ehrenberg M; Tenson T
A new beginning of the end of translation
00
7355 2002 NATURE STRUCTURAL BIOLOGY 9(3):225-230
Schmeing TM; Seila AC; Hansen JL; Freeborn B; Soukup JK; Scaringe SA; Strobel SA; Moore PB; Steitz TA
A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits
86
1356 2002 NATURE STRUCTURAL BIOLOGY 9(5):343-347
Torres-Larios A; Dock-Bregeon AC; Romby P; Rees B; Sankaranarayanan R; Caillet J; Springer M; Ehresmann C; Ehresmann B; Moras D
Structural basis of translational control by Escherichia coli threonyl tRNA synthetase
10
1357 2002 NATURE STRUCTURAL BIOLOGY 9(5):353-358
Sivaraman J; Sauve V; Larocque R; Stura EA; Schrag JD; Cygler M; Matte A
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP
10
2358 2002 NATURE STRUCTURAL BIOLOGY 9(5):370-374
Kieft JS; Zhou KH; Grech A; Jubin R; Doudna JA
Crystal structure of an RNA tertiary domain essential to HCVIRES-mediated translation initiation
00
3359 2002 NATURE STRUCTURAL BIOLOGY 9(10):750-755
Tung CS; Joseph S; Sanbonmatsu KY
All-atom homology model of the Escherichia coli 30S ribosomal subunit
00
1360 2002 NEW ENGLAND JOURNAL OF MEDICINE 346(8):630-631
Musher DM; Dowell ME; Shortridge VD; Flamm RK; Jorgensen JH; Le Magueres P; Krause KL
Emergence of macrolide resistance during treatment of pneumococcal pneumonia
51
3361 2002 NUCLEIC ACIDS RESEARCH 30(1):176-178
Szymanski M; Barciszewska MZ; Erdmann VA; Barciszewski J
5S ribosomal RNA database
10
1362 2002 NUCLEIC ACIDS RESEARCH 30(1):392-394
Klosterman PS; Tamura M; Holbrook SR; Brenner SE
SCOR: A Structural Classification of RNA database
10
4363 2002 NUCLEIC ACIDS RESEARCH 30(1):395-397
Nagaswamy U; Larios-Sanz M; Hury J; Collins S; Zhang ZD; Zhao Q; Fox GE
NCIR: a database of non-canonical interactions in known RNA structures
32
2364 2002 NUCLEIC ACIDS RESEARCH 30(4):931-941
Kuhn JF; Tran EJ; Maxwell ES
Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
20
2365 2002 NUCLEIC ACIDS RESEARCH 30(11):2501-2507
Wang HC; Hickey DA
Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes
00
5366 2002 NUCLEIC ACIDS RESEARCH 30(11):2575-2587
Caetano-Anolles G
Tracing the evolution of RNA structure in ribosomes
00
4367 2002 NUCLEIC ACIDS RESEARCH 30(12):2620-2627
Shimizu T; Nakagaki M; Nishi Y; Kobayashi Y; Hachimori A; Uchiumi T
Interaction among silkworm ribosomal proteins P1, P2 and P0 required for functional protein binding to the GTPase- associated domain of 28S rRNA
00
8368 2002 NUCLEIC ACIDS RESEARCH 30(13):2950-2960
Fraternali F; Cavallo L
Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome
00
3369 2002 NUCLEIC ACIDS RESEARCH 30(13):2961-2971
Zhang Y; Li ZJ; Pilch DS; Leibowitz MJ
Pentamidine inhibits catalytic activity of group I intron Ca.LSU by altering RNA folding
00
6370 2002 NUCLEIC ACIDS RESEARCH 30(16):3497-3531
Leontis NB; Stombaugh J; Westhof E
The non-Watson-Crick base pairs and their associated isostericity matrices
00
1371 2002 NUCLEIC ACIDS RESEARCH 30(17):3643-3652
Ponting CP
Novel domains and orthologues of eukaryotic transcription elongation factors
00
4372 2002 ORGANIC LETTERS 4(6):987-990
Ma ZK; Li LP; Rupp M; Zhang SM; Zhang XL
Regioselective synthesis of bifunctional macrolides for probing ribosomal binding
00
2373 2002 ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE 32(4):311-332
Ferris JP
Montmorillonite catalysis of 30-50 mer oligonucleotides: Laboratory demonstration of potential steps in the origin of the RNA world
00
1374 2002 POLISH JOURNAL OF CHEMISTRY 76(6):815-822
Giel-Pietraszuk M; Mucha P; Rekowski P; Kupryszewski G; Barciszewska MZ
Interaction of a transcription factor IIIA peptide containing two zinc fingers with 5S rRNA
00
3375 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(13):8518-8523
Fang XW; Thiyagarajan P; Sosnick TR; Pan T
The rate-limiting step in the folding of a large ribozyme without kinetic traps
00
3376 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(17):11121-11126
Grundy FJ; Winkler WC; Henkin TM
tRNA-mediated transcription antitermination in vitro: Codon- anticodon pairing independent of the ribosome
00
9377 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(18):11658-11663
Parnell KM; Seila AC; Strobel SA
Evidence against stabilization of the transition state oxyanion by a pKa-perturbed RNA base in the peptidyl transferase center
11
13378 2002 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 99(18):11670-11675
Hansen JL; Schmeing TM; Moore PB; Steitz TA
Structural insights into peptide bond formation
00
4379 2002 PROGRESS IN CHEMISTRY 14(4):263-272
Jiang M; Shen T; Xu HB; Liu CL
The influences of metal ions on protein folding, recognition, self-assembly and biological functions
00
3380 2002 PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 71 71():513-551
Krab IM; Parmeggiani A
Mechanisms of EF-Tu, a pioneer GTPase
00
2381 2002 PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 72 72():1-39
Ryabova LA; Pooggin MM; Hohn T
Viral strategies of translation initiation: Ribosomal shunt and reinitiation
00
4382 2002 PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 72 72():223-268
Cristofari G; Darlix JL
The ubiquitous nature of RNA chaperone proteins
10
2383 2002 PROTEIN AND PEPTIDE LETTERS 9(2):95-105
Esposito L; Vitagliano L; Mazzarella L
Recent advances in atomic resolution protein crystallography
00
1384 2002 PROTEIN EXPRESSION AND PURIFICATION 25(1):149-159
Jin HJ; Yang YD
Purification and biochemical characterization of the ErmSF macrolide-lincosamide-streptogramin B resistance factor protein expressed as a hexahistidine-tagged protein in Escherichia coli
00
1385 2002 PURE AND APPLIED CHEMISTRY 74(5):703-785
Erhardt PW
Medicinal chemistry in the new millennium. A glance into the future
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4386 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(2):202-213
Hansen MA; Kirpekar F; Ritterbusch W; Vester B
Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria
00
3387 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(3):279-289
Whirl-Carrillo M; Gabashvili IS; Bada M; Banatao DR; Altman RB
Mining biochemical information: Lessons taught by the ribosome
10
7388 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(4):401-411
Semrad K; Green R
Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA
00
1389 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(4):440-451
Kitamura A; Muto Y; Watanabe S; Kim I; Ito T; Nishiya Y; Sakamoto K; Ohtsuki T; Kawai G; Watanabe K; Hosono K; Takaku H; Katoh E; Yamazaki T; Inoue T; Yokoyama S
Solution structure of an RNA fragment with the P7/P9.0 region and the 3 '-terminal guanosine of the Tetrahymena group I intron
10
1390 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(5):612-625
Rinke-Appel J; Osswald M; Von Knoblauch K; Mueller F; Brimacombe R; Sergiev P; Avdeeva O; Bogdanov A; Dontsova O
Crosslinking of 4.5S RNA to the Escherichia coli ribosome in the presence or absence of the protein Ffh
00
9391 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(7):873-877
Gagnon MG; Steinberg SV
GU receptors of double helices mediate tRNA movement in the ribosome
00
1392 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(7):924-932
Lima S; Hildenbrand J; Korostelev A; Hattman S; Li H
Crystal structure of an RNA helix recognized by a zinc-finger protein: An 18-bp duplex at 1.6 angstrom resolution
00
1393 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(7):948-958
Inada T; Winstall E; Tarun SZ; Yates JR; Schieltz D; Sachs AB
One-step affinity purification of the yeast ribosome and its, associated proteins and mRNAs
00
5394 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(9):1112-1119
Nagaswamy U; Fox GE
Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs
00
5395 2002 RNA-A PUBLICATION OF THE RNA SOCIETY 8(9):1120-1128
Boddeker N; Bahador G; Gibbs C; Mabery E; Wolf J; Xu LH; Watson J
Characterization of a novel antibacterial agent that inhibits bacterial translation
00
1396 2002 SCIENCE 295(5564):2418-2421
Whitesides GM; Grzybowski B
Self-assembly at all scales
20
4397 2002 SCIENCE 297(5585):1345-1348
Pool MR; Stumm J; Fulga TA; Sinning I; Dobberstein B
Distinct modes of signal recognition particle interaction with the ribosome
10
9398 2002 SCIENCE 297(5588):1864-1867
Gong F; Yanofsky C
Instruction of translating ribosome by nascent peptide
10
3399 2002 SINGLE MOLECULES 3(1):63-68
Webster G; Hilgenfeld R
Perspectives on single molecule diffraction using the x-ray free electron laser
00
5400 2002 STRUCTURE 10(4):527-534
Ikawa Y; Fukada K; Watanabe S; Shiraishi H; Inoue T
Design, construction, and analysis of a novel class of self- folding RNA
00

Cited
nodes
Nodes / AuthorsGCSLCS
12401 2002 TRENDS IN BIOCHEMICAL SCIENCES 27(7):344-351
Decatur WA; Fournier MJ
rRNA modifications and ribosome function
00
7402 2002 TRENDS IN BIOCHEMICAL SCIENCES 27(9):448-454
Harger JW; Meskauskas A; Dinman JD
An 'integrated model' of programmed ribosomal frameshifting
00
2403 2002 TRENDS IN MICROBIOLOGY 10(10):S27-S31
Schmid MB
Structural proteomics: the potential of high-throughput structure determination
00

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