Record 162 View: Standard | Glossary HistCite Guide |
Author(s): White SH; Wimley WC
Title: Membrane protein folding and stability: Physical principles
Source: ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE 28: 319-365
Date: 1999
Document Type: Journal : Review
DOI:
Language: English
Comment:
Address: Univ Calif Irvine, Dept Physiol & Biophys, Irvine, CA 92697 USA.
Tulane Univ, Med Ctr, Dept Biochem, New Orleans, LA 70112 USA. Reprint: White, SH, Univ Calif Irvine, Dept Physiol & Biophys, Irvine, CA 92697
USA. E-mail:
Author Keywords: lipid-protein interactions; peptide-bilayer interactions; membrane-
active peptides; antimicrobial peptides; thermodynamics; bilayer
structure; soluble protein folding
KeyWords Plus: PHOTOSYNTHETIC REACTION CENTER; TRANSMEMBRANE ALPHA-HELICES; LIGHT-
HARVESTING COMPLEX; CYTOCHROME-C-OXIDASE; EXPRESSED POLYPEPTIDE
FRAGMENTS; BILAYER STRUCTURE DETERMINATION; PHOSPHOLIPID MODEL
MEMBRANE; GLYCOPHORIN-A DIMERIZATION; AMINO-ACID-RESIDUES; X-RAY-
DIFFRACTION
Abstract: Stably folded membrane proteins reside in a free energy minimum determined by the interactions of the peptide chains with each other, the lipid bilayer hydrocarbon core, the bilayer interface, and with water. The prediction of three-dimensional structure from sequence requires a detailed understanding of these interactions. Progress toward this objective is summarized in this review by means of a thermodynamic framework for describing membrane protein folding and stability. The framework includes a coherent thermodynamic formalism for determining and describing the energetics of peptide-bilayer interactions and a review of the properties of the environment of membrane proteins-the bilayer milieu. Using a four-step thermodynamic cycle as a guide, advances in three main aspects of membrane protein folding energetics are discussed: protein binding and folding in bilayer interfaces, transmembrane helix insertion, and helix-helix interactions. The concepts of membrane protein stability that emerge provide insights to fundamental issues of protein folding.
Cited References: ADAMS PD, 1996, PROTEINS, V26, P257 ANDREWS DW, 1996, TRENDS BIOCHEM SCI, V21, P365 ANFINSEN CB, 1973, SCIENCE, V181, P223 ARKIN IT, 1997, PROTEINS, V28, P465 BECHINGER B, 1996, J MOL BIOL, V263, P768 BENSHAUL A, 1996, BIOPHYS J, V71, P130 BENTAL N, 1996, BIOPHYS J, V70, P1803 BENTAL N, 1996, BIOPHYS J, V71, P3046 BENTAL N, 1996, BIOPHYS J, V71, P561 BENTAL N, 1997, J PHYS CHEM B, V101, P450 BIBI E, 1990, P NATL ACAD SCI USA, V87, P4325 BIBI E, 1998, TRENDS BIOCHEM SCI, V23, P51 BLOBEL G, 1975, J CELL BIOL, V67, P835 BLONDELLE SE, 1997, BIOPOLYMERS, V42, P489 BOOTH PJ, 1997, BIOCHEMISTRY-US, V36, P197 BORMANN BJ, 1992, ANNU REV BIOPH BIOM, V21, P223 BOWIE JU, 1997, J MOL BIOL, V272, P780 BROSIG B, 1998, PROTEIN SCI, V7, P1052 BROUILLETTE CG, 1989, PROTEINS, V5, P38 BUCHANAN SK, 1999, NAT STRUCT BIOL, V6, P56 CHAN HS, 1997, ANNU REV BIOPH BIOM, V26, P425 CHANG CH, 1991, BIOCHEMISTRY-US, V30, P5352 CHANG G, 1998, SCIENCE, V282, P2220 CHARIFSON PS, 1990, J COMPUT CHEM, V11, P1181 CHOTHIA C, 1974, NATURE, V248, P338 CHOTHIA C, 1975, NATURE, V254, P304 CHU B, 1967, MOL FORCES COWAN SW, 1992, NATURE, V358, P727 CRAMER WA, 1992, FASEB J, V6, P3397 CRAMER WA, 1995, ANNU REV BIOPH BIOM, V24, P611 DATHE M, 1996, BIOCHEMISTRY-US, V35, P12612 DEBER CM, 1995, BIOPOLYMERS, V37, P295 DEISENHOFER J, 1985, NATURE, V318, P618 DEMPSEY CE, 1990, BIOCHIM BIOPHYS ACTA, V1031, P143 DEPLANQUE MRR, 1998, BIOCHEMISTRY-US, V37, P9333 DEYOUNG LR, 1990, J PHYS CHEM-US, V94, P801 DILL KA, 1990, BIOCHEMISTRY-US, V29, P7133 DOYLE DA, 1998, SCIENCE, V280, P69 EISENBERG D, 1984, J MOL BIOL, V179, P125 ENGELMAN DM, 1981, CELL, V23, P411 ENGELMAN DM, 1986, ANNU REV BIOPHYS BIO, V15, P321 ERIKSSON AE, 1992, SCIENCE, V255, P178 FAUCHERE JL, 1983, EUR J MED CHEM, V18, P369 FERGUSON AD, 1998, SCIENCE, V282, P2215 FLEMING KG, 1997, J MOL BIOL, V272, P266 GILL SJ, 1985, J PHYS CHEM-US, V89, P3758 GRIGORIEFF N, 1996, J MOL BIOL, V259, P393 GROVES JD, 1995, J BIOL CHEM, V270, P9097 HALTIA T, 1995, BIOCHIM BIOPHYS ACTA, V1241, P295 HE K, 1996, BIOPHYS J, V71, P2669 HENDERSON R, 1990, J MOL BIOL, V213, P899 HENDSCH ZS, 1994, PROTEIN SCI, V3, P211 HIRAKI K, 1981, BIOCHIM BIOPHYS ACTA, V647, P18 HRISTOVA K, 1997, J BIOL CHEM, V272, P24224 HRISTOVA K, 1998, BIOPHYS J, V74, P2419 HUNT JF, 1997, BIOCHEMISTRY-US, V36, P15156 HUNT JF, 1997, BIOCHEMISTRY-US, V36, P15177 HUSCHILT JC, 1985, BIOCHEMISTRY-US, V24, P1377 HYDE CC, 1988, J BIOL CHEM, V263, P17857 IWATA S, 1995, NATURE, V376, P660 IWATA S, 1998, SCIENCE, V281, P64 JACKSON MB, 1978, BIOCHEMISTRY-US, V17, P911 JACOBS RE, 1984, J AM CHEM SOC, V106, P6909 JACOBS RE, 1989, BIOCHEMISTRY-US, V28, P3421 JAHNIG F, 1983, P NATL ACAD SCI-BIOL, V80, P3691 JANIN J, 1996, PROTEINS, V24, PR1 JOHNSON AE, 1995, COLD SPRING HARB SYM, V60, P71 KABACK HR, 1997, CURR OPIN STRUC BIOL, V7, P537 KAHN TW, 1992, BIOCHEMISTRY-US, V31, P6144 KAHN TW, 1992, BIOCHEMISTRY-US, V31, P8829 KAISER ET, 1983, P NATL ACAD SCI USA, V80, P1137 KAUZMANN W, 1959, ADV PROTEIN CHEM, V14, P1 KHAN SMA, 1991, EUR J BIOCHEM, V200, P53 KIMURA Y, 1997, NATURE, V389, P206 KLEINSCHMIDT JH, 1996, BIOCHEMISTRY-US, V35, P12993 KOEBNIK R, 1996, EMBO J, V15, P3529 KOEPKE J, 1996, STRUCTURE, V4, P581 KUHLBRANDT W, 1994, NATURE, V367, P614 KURUMBAIL RG, 1996, NATURE, V384, P644 KYTE J, 1982, J MOL BIOL, V157, P105 LADOKHIN AS, 1999, J MOL BIOL, V285, P1363 LANDOLTMARTICOR.C, 1993, J MOL BIOL, V229, P602 LANGOSCH D, 1998, PROTEINS, V31, P150 LAU FW, 1997, BIOCHEMISTRY-US, V36, P5884 LEMMON MA, 1992, BIOCHEMISTRY-US, V31, P12719 LEMMON MA, 1992, J BIOL CHEM, V267, P7683 LEMMON MA, 1994, NAT STRUCT BIOL, V1, P157 LEMMON MA, 1994, Q REV BIOPHYS, V27, P157 LI SC, 1994, NAT STRUCT BIOL, V1, P368 LUECKE H, 1998, SCIENCE, V280, P1934 LUPAS A, 1996, TRENDS BIOCHEM SCI, V21, P375 MACKENZIE KR, 1997, SCIENCE, V276, P131 MACKENZIE KR, 1998, P NATL ACAD SCI USA, V95, P3583 MAHANTY J, 1976, DISPERSION FORCES MARSH D, 1997, EUR BIOPHYS J BIOPHY, V26, P203 MARTI T, 1998, J BIOL CHEM, V273, P9312 MATLACK KES, 1998, CELL, V92, P381 MCDERMOTT G, 1995, NATURE, V374, P517 MCDONNELL PA, 1993, J MOL BIOL, V233, P447 MEYER JEW, 1997, J MOL BIOL, V266, P761 MILIK M, 1993, PROTEINS, V15, P10 MINGARRO I, 1996, PROTEIN SCI, V5, P1339 MINGARRO I, 1997, J MOL BIOL, V272, P633 MOLL TS, 1994, BIOCHEMISTRY-US, V33, P15469 MOREIN S, 1997, BIOPHYS J, V73, P3078 MORROW MR, 1985, BIOCHEMISTRY-US, V24, P5396 MOURITSEN OG, 1984, BIOPHYS J, V46, P141 MOURITSEN OG, 1993, ANNU REV BIOPH BIOM, V22, P145 MOURITSEN OG, 1993, PROTEIN LIPID INTERA, P1 OREN Z, 1997, BIOCHEMISTRY-US, V36, P1826 PACE CN, 1986, METHOD ENZYMOL, V131, P266 PAUTSCH A, 1998, NAT STRUCT BIOL, V5, P1013 PEBAYPEYROULA E, 1997, SCIENCE, V277, P1676 PERSSON S, 1998, BIOPHYS J, V75, P1365 PICOT D, 1994, NATURE, V367, P243 PITZER KS, 1995, THERMODYNAMICS POPOT JL, 1987, J MOL BIOL, V198, P655 POPOT JL, 1990, BIOCHEMISTRY-US, V29, P4031 PREUSCH PC, 1998, NAT STRUCT BIOL, V5, P12 PRIVALOV PL, 1992, PROTEIN FOLDING, P83 PTITSYN OB, 1992, PROTEIN FOLDING, P243 REES DC, 1989, ANNU REV BIOCHEM, V58, P607 REES DC, 1989, SCIENCE, V245, P510 REES, 1994, MEMBRANE PROTEIN STR, P3 REITHMEIER RAF, 1995, CURR OPIN STRUC BIOL, V5, P491 REYNOLDS JA, 1974, P NATL ACAD SCI USA, V71, P2925 RICHARDS FM, 1977, ANNU REV BIOPHYS BIO, V6, P151 RICHARDS FM, 1992, PROTEIN FOLDING, P1 RICHARDS FM, 1993, Q REV BIOPHYS, V26, P423 RICHARDSON JS, 1981, ADV PROTEIN CHEM, V34, P167 RIDGE KD, 1995, P NATL ACAD SCI USA, V92, P3204 ROSE GD, 1978, NATURE, V272, P586 ROSE GD, 1985, SCIENCE, V229, P834 ROSEMAN MA, 1988, J MOL BIOL, V201, P621 RUSSELL CJ, 1996, BIOCHEMISTRY-US, V35, P9526 SAMATEY FA, 1995, P NATL ACAD SCI USA, V92, P4577 SCHATZ G, 1996, SCIENCE, V271, P1519 SCHIFFER M, 1992, PROTEIN ENG, V5, P213 SCHUBERT WD, 1997, J MOL BIOL, V272, P741 SCHWARZ G, 1996, BIOPHYS CHEM, V58, P67 SEELIG A, 1974, BIOCHEMISTRY-US, V13, P4839 SEELIG J, 1991, BIOCHEMISTRY-US, V30, P9354 SHARP KA, 1991, BIOCHEMISTRY-US, V30, P9686 SIMON SA, 1977, BIOCHIM BIOPHYS ACTA, V468, P378 SIMON SM, 1995, COLD SPRING HARB SYM, V60, P57 SOEKARJO M, 1996, BIOCHEMISTRY-US, V35, P1232 SONG LZ, 1996, SCIENCE, V274, P1859 SUBCZYNSKI WK, 1998, BIOCHEMISTRY-US, V37, P3156 SURREY T, 1996, BIOCHEMISTRY-US, V35, P2283 TANFORD C, 1973, HYDROPHOBIC EFFECT F TERZI E, 1994, BIOCHEMISTRY-US, V33, P1345 THORGEIRSSON TE, 1995, BIOCHEMISTRY-US, V34, P5518 TREUTLEIN HR, 1992, BIOCHEMISTRY-US, V31, P12726 TRISTRAMNAGLE S, 1986, BIOCHIM BIOPHYS ACTA, V854, P58 TSUKIHARA T, 1996, SCIENCE, V272, P1136 VOGEL H, 1981, FEBS LETT, V134, P37 VONHEIJNE G, 1992, J MOL BIOL, V225, P487 VONHEIJNE G, 1994, ANNU REV BIOPH BIOM, V23, P167 WALDBURGER CD, 1995, NAT STRUCT BIOL, V2, P122 WALLIN E, 1997, PROTEIN SCI, V6, P808 WALLIN E, 1998, PROTEIN SCI, V7, P1029 WALTHER D, 1996, J MOL BIOL, V255, P536 WEISS MS, 1991, SCIENCE, V254, P1627 WEISS MS, 1992, J MOL BIOL, V227, P493 WHITE SH, 1977, ANN NY ACAD SCI, V303, P243 WHITE SH, 1980, SCIENCE, V207, P1075 WHITE SH, 1981, NATURE, V290, P161 WHITE SH, 1994, CURR OPIN STRUC BIOL, V4, P79 WHITE SH, 1994, MEMBRANE PROTEIN STR, P97 WHITE SH, 1995, PERMEABILITY STABILI, P1 WHITE SH, 1996, MEMBRANE STRUCTURE D, P127 WHITE SH, 1998, BBA-REV BIOMEMBRANES, V1376, P339 WHITE SH, 1998, METHOD ENZYMOL, V295, P62 WIENER MC, 1991, BIOPHYS J, V59, P162 WIENER MC, 1991, BIOPHYS J, V59, P174 WIENER MC, 1992, BIOPHYS J, V61, P434 WIEPRECHT T, 1997, BIOCHEMISTRY-US, V36, P12869 WIMLEY WC, 1992, BIOCHEMISTRY-US, V31, P12813 WIMLEY WC, 1993, BIOCHEMISTRY-US, V32, P6307 WIMLEY WC, 1996, BIOCHEMISTRY-US, V35, P5109 WIMLEY WC, 1996, NAT STRUCT BIOL, V3, P842 WIMLEY WC, 1996, P NATL ACAD SCI USA, V93, P2985 WIMLEY WC, 1998, J MOL BIOL, V277, P1091 XIA D, 1997, SCIENCE, V277, P60 YANG AS, 1992, J MOL BIOL, V227, P889 YAU WM, 1998, BIOCHEMISTRY-US, V37, P14713 YEATES TO, 1987, P NATL ACAD SCI USA, V84, P6438 ZHAN HJ, 1995, BIOCHEMISTRY-US, V34, P4856 ZHANG YP, 1992, BIOCHEMISTRY-US, V31, P11579 ZHANG YP, 1995, BIOCHEMISTRY-US, V34, P2348 ZHANG YP, 1995, BIOCHEMISTRY-US, V34, P2362 ZHANG ZL, 1998, NATURE, V392, P677 |